Wall clock time and date at job start Tue Mar 31 2020 10:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 H 1.08993 * 110.82090 * 51.66496 * 3 2 1 5 5 C 1.54896 * 110.75672 * 288.32925 * 3 2 1 6 6 C 1.54261 * 104.19726 * 203.74661 * 5 3 2 7 7 C 1.53870 * 106.60124 * 23.60767 * 6 5 3 8 8 C 1.54262 * 106.59950 * 0.02562 * 7 6 5 9 9 H 1.09005 * 110.48634 * 95.19616 * 8 7 6 10 10 C 1.52994 * 110.49068 * 217.70814 * 8 7 6 11 11 N 1.46497 * 109.47325 * 293.54750 * 10 8 7 12 12 C 1.34777 * 120.00061 * 179.97438 * 11 10 8 13 13 O 1.21588 * 120.00179 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00108 * 179.97438 * 12 11 10 15 15 C 1.47471 * 125.62717 * 0.03139 * 14 12 11 16 16 C 1.54906 * 104.81210 * 204.04395 * 15 14 12 17 17 C 1.55156 * 101.61451 * 323.04512 * 16 15 14 18 18 O 1.42907 * 110.72012 * 277.11470 * 17 16 15 19 19 C 1.50706 * 110.71850 * 154.02301 * 17 16 15 20 20 H 1.07997 * 119.99665 * 359.97438 * 19 17 16 21 21 C 1.37876 * 119.99739 * 179.97438 * 19 17 16 22 22 N 1.31508 * 120.00118 * 0.02562 * 21 19 17 23 23 Si 1.86807 * 119.99770 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46868 * 89.99993 * 23 21 19 25 25 H 1.48492 * 109.47016 * 210.00005 * 23 21 19 26 26 H 1.48494 * 109.46930 * 330.00142 * 23 21 19 27 27 C 1.47017 * 125.65312 * 180.02562 * 14 12 11 28 28 H 1.08999 * 109.47333 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46517 * 299.99839 * 1 2 3 30 30 H 1.09000 * 109.47524 * 59.99548 * 1 2 3 31 31 H 1.09001 * 109.46917 * 239.99905 * 2 1 3 32 32 H 1.08997 * 109.47440 * 119.99933 * 2 1 3 33 33 H 1.09006 * 110.48294 * 85.06138 * 5 3 2 34 34 H 1.09005 * 110.48362 * 322.42786 * 5 3 2 35 35 H 1.09000 * 110.03164 * 264.32536 * 6 5 3 36 36 H 1.08999 * 110.03251 * 142.89548 * 6 5 3 37 37 H 1.09000 * 110.03268 * 240.71556 * 7 6 5 38 38 H 1.08997 * 110.02919 * 119.28675 * 7 6 5 39 39 H 1.09002 * 109.47607 * 173.54299 * 10 8 7 40 40 H 1.09008 * 109.46736 * 53.54908 * 10 8 7 41 41 H 0.96999 * 119.99776 * 359.97438 * 11 10 8 42 42 H 1.09008 * 110.34870 * 85.22524 * 15 14 12 43 43 H 1.09001 * 110.40581 * 322.89560 * 15 14 12 44 44 H 1.09002 * 111.00655 * 204.94912 * 16 15 14 45 45 H 1.09002 * 111.00329 * 81.13838 * 16 15 14 46 46 H 0.96696 * 113.99691 * 180.02562 * 18 17 16 47 47 H 0.97001 * 120.00123 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.88206 * 59.58080 * 27 14 12 49 49 H 1.09004 * 110.01118 * 298.49173 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5733 2.0184 0.7991 5 6 1.7935 2.1119 -1.3749 6 6 2.8428 3.2408 -1.4396 7 6 3.9807 2.8386 -0.4853 8 6 3.5836 1.4789 0.1257 9 1 4.0341 0.6615 -0.4374 10 6 4.0024 1.4094 1.5955 11 7 5.4644 1.4162 1.6877 12 6 6.0640 1.3617 2.8935 13 8 5.3914 1.3064 3.9049 14 7 7.4090 1.3675 2.9782 15 6 8.3414 1.4308 1.8374 16 6 9.6558 0.8035 2.3649 17 6 9.6815 1.3169 3.8289 18 8 10.2169 2.6405 3.8912 19 6 10.4719 0.3822 4.7080 20 1 10.9237 -0.5032 4.2858 21 6 10.6181 0.6576 6.0510 22 7 10.0674 1.7355 6.5650 23 14 11.5972 -0.5014 7.1408 24 1 13.0220 -0.0831 7.1540 25 1 11.0555 -0.4574 8.5227 26 1 11.4924 -1.8850 6.6119 27 6 8.1895 1.3119 4.2229 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.7856 2.5244 -1.4232 34 1 1.9527 1.3963 -2.1816 35 1 2.3989 4.1821 -1.1156 36 1 3.2246 3.3379 -2.4559 37 1 4.0891 3.5847 0.3020 38 1 4.9148 2.7405 -1.0384 39 1 3.6145 0.4933 2.0410 40 1 3.6006 2.2710 2.1289 41 1 6.0010 1.4600 0.8808 42 1 8.5076 2.4664 1.5407 43 1 7.9550 0.8523 0.9983 44 1 10.5163 1.1720 1.8065 45 1 9.6094 -0.2851 2.3334 46 1 10.2550 3.0076 4.7849 47 1 10.1705 1.9294 7.5098 48 1 7.9530 0.3983 4.7682 49 1 7.9668 2.1810 4.8419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592028263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:41 Heat of formation + Delta-G solvation = -107.562036 kcal Electronic energy + Delta-G solvation = -26584.184414 eV Core-core repulsion = 22930.777727 eV Total energy + Delta-G solvation = -3653.406688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.85073 -38.96074 -37.30173 -34.39720 -34.23323 -33.28474 -32.14330 -30.48526 -29.39881 -27.85720 -27.74894 -25.44817 -24.18818 -22.71491 -22.42246 -20.37376 -20.05812 -19.58622 -19.23103 -17.57828 -17.07493 -15.99488 -15.67617 -15.26610 -15.11351 -14.94820 -14.64799 -14.37797 -14.06427 -13.87977 -13.36737 -13.19002 -13.06667 -12.88394 -12.81273 -12.41807 -12.20799 -12.04014 -11.63884 -11.47161 -11.42737 -11.33764 -11.04819 -10.96663 -10.82150 -10.77513 -10.72568 -10.63724 -10.61439 -10.58940 -10.47573 -10.14633 -9.57143 -9.32586 -8.77277 -8.65076 -8.29552 -7.72308 -6.27421 -4.35880 3.15878 3.23457 3.29965 3.32678 3.78767 4.25215 4.28269 4.32742 4.39902 4.59494 4.89056 4.96413 5.00123 5.01734 5.14976 5.26923 5.29078 5.30819 5.38469 5.40371 5.50861 5.60565 5.68309 5.70587 5.72359 5.79966 5.83252 5.85252 5.92038 5.94039 5.99600 6.04565 6.06823 6.13168 6.18877 6.28078 6.52818 6.74573 6.82664 6.90153 7.02501 7.28608 7.34906 7.67340 7.75745 8.03764 8.56800 8.67964 9.17394 9.32920 9.45729 10.80430 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026323 B = 0.002733 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.437361 B =10241.589057 C =10748.784114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.083 4.083 4 H 0.080 0.920 5 C -0.117 4.117 6 C -0.125 4.125 7 C -0.122 4.122 8 C -0.100 4.100 9 H 0.080 0.920 10 C 0.149 3.851 11 N -0.751 5.751 12 C 0.714 3.286 13 O -0.598 6.598 14 N -0.630 5.630 15 C 0.104 3.896 16 C -0.117 4.117 17 C 0.249 3.751 18 O -0.587 6.587 19 C -0.537 4.537 20 H 0.067 0.933 21 C 0.070 3.930 22 N -0.895 5.895 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 C 0.120 3.880 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.392 0.608 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.386 0.614 47 H 0.271 0.729 48 H 0.062 0.938 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 0.154 -16.365 21.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.102 4.102 4 H 0.098 0.902 5 C -0.155 4.155 6 C -0.162 4.162 7 C -0.160 4.160 8 C -0.119 4.119 9 H 0.099 0.901 10 C 0.024 3.976 11 N -0.408 5.408 12 C 0.416 3.584 13 O -0.478 6.478 14 N -0.367 5.367 15 C -0.019 4.019 16 C -0.155 4.155 17 C 0.208 3.792 18 O -0.397 6.397 19 C -0.575 4.575 20 H 0.085 0.915 21 C -0.133 4.133 22 N -0.535 5.535 23 Si 0.732 3.268 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 C -0.002 4.002 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.226 0.774 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.238 0.762 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.717 0.136 -16.057 21.782 hybrid contribution 0.688 -0.443 0.896 1.213 sum -14.030 -0.306 -15.161 20.658 Atomic orbital electron populations 1.21773 0.95895 1.01475 1.01764 1.21558 0.95848 0.95961 1.02242 1.22143 0.93994 0.96253 0.97849 0.90159 1.22414 0.98732 0.97433 0.96912 1.22119 0.96098 0.98563 0.99441 1.22222 0.98266 0.96684 0.98797 1.22304 0.96039 0.98237 0.95329 0.90140 1.21143 0.79471 1.01932 0.95021 1.45120 1.06947 1.81617 1.07129 1.15539 0.81061 0.78275 0.83527 1.90881 1.63144 1.58929 1.34804 1.47940 1.02692 1.75973 1.10110 1.22228 0.90933 1.00025 0.88735 1.22732 0.95097 0.99819 0.97813 1.19478 0.87409 0.82030 0.90291 1.86067 1.86143 1.31720 1.35747 1.21519 1.33612 1.09006 0.93359 0.91519 1.25080 0.94738 0.95470 0.98028 1.69576 1.43813 1.25743 1.14335 0.86387 0.79951 0.80997 0.79484 1.20391 1.20985 1.19716 1.22867 0.92311 1.01549 0.83458 0.92928 0.92714 0.92801 0.91965 0.91631 0.91755 0.91625 0.91931 0.92007 0.91306 0.91819 0.91997 0.91971 0.77421 0.92064 0.92716 0.90607 0.90605 0.76190 0.91904 0.91920 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.80 37.16 0.36 -0.70 16 2 C -0.12 -0.92 5.43 -26.73 -0.15 -1.07 16 3 C -0.08 -0.68 2.30 -88.61 -0.20 -0.88 16 4 H 0.08 0.70 8.06 -51.93 -0.42 0.28 16 5 C -0.12 -0.83 5.69 -25.07 -0.14 -0.98 16 6 C -0.12 -0.94 6.80 -25.62 -0.17 -1.11 16 7 C -0.12 -1.08 6.05 -25.62 -0.15 -1.23 16 8 C -0.10 -0.92 2.38 -88.95 -0.21 -1.14 16 9 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 10 C 0.15 1.91 4.98 -4.05 -0.02 1.89 16 11 N -0.75 -11.32 5.35 -65.23 -0.35 -11.67 16 12 C 0.71 14.73 8.49 -86.92 -0.74 13.99 16 13 O -0.60 -14.77 16.67 5.29 0.09 -14.69 16 14 N -0.63 -13.25 3.33 -176.21 -0.59 -13.84 16 15 C 0.10 1.83 6.57 -2.50 -0.02 1.81 16 16 C -0.12 -2.32 6.22 -24.58 -0.15 -2.47 16 17 C 0.25 6.05 0.86 -89.94 -0.08 5.98 16 18 O -0.59 -14.93 13.09 -35.23 -0.46 -15.39 16 19 C -0.54 -14.08 8.11 -34.44 -0.28 -14.36 16 20 H 0.07 1.71 7.76 -52.49 -0.41 1.31 16 21 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 22 N -0.90 -24.04 10.98 55.43 0.61 -23.44 16 23 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.12 2.98 5.54 -3.07 -0.02 2.96 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 31 H 0.06 0.46 7.99 -51.93 -0.41 0.04 16 32 H 0.06 0.57 7.77 -51.93 -0.40 0.17 16 33 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.07 0.45 7.93 -51.93 -0.41 0.03 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.69 7.77 -51.93 -0.40 0.29 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.85 7.77 -51.93 -0.40 0.45 16 40 H 0.06 0.87 8.05 -51.92 -0.42 0.45 16 41 H 0.39 4.96 6.80 -40.82 -0.28 4.69 16 42 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.05 0.77 7.30 -51.93 -0.38 0.39 16 44 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 46 H 0.39 10.16 6.98 45.56 0.32 10.48 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.06 1.69 7.82 -51.93 -0.41 1.28 16 49 H 0.06 1.66 8.07 -51.93 -0.42 1.24 16 LS Contribution 381.99 15.07 5.76 5.76 Total: -1.00 -30.04 381.99 -10.22 -40.26 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -8.19 Total: 13.02 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -2.06 Total: 4.45 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.33 Total: -48.95 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -0.37 Total: -30.08 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.04 -10.22 -40.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592028263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.298 kcal (2) G-P(sol) polarization free energy of solvation -30.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds