Wall clock time and date at job start Tue Mar 31 2020 10:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47069 * 2 1 4 4 H 1.08993 * 110.82090 * 51.66496 * 3 2 1 5 5 C 1.54896 * 110.75672 * 288.32925 * 3 2 1 6 6 C 1.54261 * 104.19726 * 203.74661 * 5 3 2 7 7 C 1.53870 * 106.60124 * 23.60767 * 6 5 3 8 8 C 1.54262 * 106.59950 * 0.02562 * 7 6 5 9 9 H 1.09005 * 110.48634 * 95.19616 * 8 7 6 10 10 C 1.52994 * 110.49068 * 217.70814 * 8 7 6 11 11 N 1.46497 * 109.47325 * 293.54750 * 10 8 7 12 12 C 1.34777 * 120.00061 * 179.97438 * 11 10 8 13 13 O 1.21588 * 120.00179 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00108 * 179.97438 * 12 11 10 15 15 C 1.47471 * 125.62717 * 0.03139 * 14 12 11 16 16 C 1.54906 * 104.81210 * 204.04395 * 15 14 12 17 17 C 1.55156 * 101.61451 * 323.04512 * 16 15 14 18 18 O 1.42907 * 110.72012 * 277.11470 * 17 16 15 19 19 C 1.50706 * 110.71850 * 154.02301 * 17 16 15 20 20 H 1.07997 * 119.99665 * 359.97438 * 19 17 16 21 21 C 1.37876 * 119.99739 * 179.97438 * 19 17 16 22 22 N 1.31508 * 120.00118 * 0.02562 * 21 19 17 23 23 Si 1.86807 * 119.99770 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46868 * 89.99993 * 23 21 19 25 25 H 1.48492 * 109.47016 * 210.00005 * 23 21 19 26 26 H 1.48494 * 109.46930 * 330.00142 * 23 21 19 27 27 C 1.47017 * 125.65312 * 180.02562 * 14 12 11 28 28 H 1.08999 * 109.47333 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46517 * 299.99839 * 1 2 3 30 30 H 1.09000 * 109.47524 * 59.99548 * 1 2 3 31 31 H 1.09001 * 109.46917 * 239.99905 * 2 1 3 32 32 H 1.08997 * 109.47440 * 119.99933 * 2 1 3 33 33 H 1.09006 * 110.48294 * 85.06138 * 5 3 2 34 34 H 1.09005 * 110.48362 * 322.42786 * 5 3 2 35 35 H 1.09000 * 110.03164 * 264.32536 * 6 5 3 36 36 H 1.08999 * 110.03251 * 142.89548 * 6 5 3 37 37 H 1.09000 * 110.03268 * 240.71556 * 7 6 5 38 38 H 1.08997 * 110.02919 * 119.28675 * 7 6 5 39 39 H 1.09002 * 109.47607 * 173.54299 * 10 8 7 40 40 H 1.09008 * 109.46736 * 53.54908 * 10 8 7 41 41 H 0.96999 * 119.99776 * 359.97438 * 11 10 8 42 42 H 1.09008 * 110.34870 * 85.22524 * 15 14 12 43 43 H 1.09001 * 110.40581 * 322.89560 * 15 14 12 44 44 H 1.09002 * 111.00655 * 204.94912 * 16 15 14 45 45 H 1.09002 * 111.00329 * 81.13838 * 16 15 14 46 46 H 0.96696 * 113.99691 * 180.02562 * 18 17 16 47 47 H 0.97001 * 120.00123 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.88206 * 59.58080 * 27 14 12 49 49 H 1.09004 * 110.01118 * 298.49173 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5733 2.0184 0.7991 5 6 1.7935 2.1119 -1.3749 6 6 2.8428 3.2408 -1.4396 7 6 3.9807 2.8386 -0.4853 8 6 3.5836 1.4789 0.1257 9 1 4.0341 0.6615 -0.4374 10 6 4.0024 1.4094 1.5955 11 7 5.4644 1.4162 1.6877 12 6 6.0640 1.3617 2.8935 13 8 5.3914 1.3064 3.9049 14 7 7.4090 1.3675 2.9782 15 6 8.3414 1.4308 1.8374 16 6 9.6558 0.8035 2.3649 17 6 9.6815 1.3169 3.8289 18 8 10.2169 2.6405 3.8912 19 6 10.4719 0.3822 4.7080 20 1 10.9237 -0.5032 4.2858 21 6 10.6181 0.6576 6.0510 22 7 10.0674 1.7355 6.5650 23 14 11.5972 -0.5014 7.1408 24 1 13.0220 -0.0831 7.1540 25 1 11.0555 -0.4574 8.5227 26 1 11.4924 -1.8850 6.6119 27 6 8.1895 1.3119 4.2229 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.7856 2.5244 -1.4232 34 1 1.9527 1.3963 -2.1816 35 1 2.3989 4.1821 -1.1156 36 1 3.2246 3.3379 -2.4559 37 1 4.0891 3.5847 0.3020 38 1 4.9148 2.7405 -1.0384 39 1 3.6145 0.4933 2.0410 40 1 3.6006 2.2710 2.1289 41 1 6.0010 1.4600 0.8808 42 1 8.5076 2.4664 1.5407 43 1 7.9550 0.8523 0.9983 44 1 10.5163 1.1720 1.8065 45 1 9.6094 -0.2851 2.3334 46 1 10.2550 3.0076 4.7849 47 1 10.1705 1.9294 7.5098 48 1 7.9530 0.3983 4.7682 49 1 7.9668 2.1810 4.8419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592028263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:40 Heat of formation + Delta-G solvation = -127.045485 kcal Electronic energy + Delta-G solvation = -26585.029280 eV Core-core repulsion = 22930.777727 eV Total energy + Delta-G solvation = -3654.251553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33408 -39.93952 -38.99007 -36.09556 -35.67917 -34.16998 -33.94900 -31.97350 -30.62940 -29.52087 -28.46944 -27.12163 -25.46386 -24.06849 -23.28876 -21.47419 -21.32934 -20.78861 -20.48169 -19.26805 -18.87397 -17.44858 -17.03074 -16.79620 -16.43200 -16.13060 -15.92177 -15.36662 -15.26061 -15.18190 -14.76953 -14.68382 -14.45128 -14.03658 -13.87829 -13.73776 -13.48775 -13.32773 -13.18937 -12.85739 -12.79253 -12.54287 -12.30421 -12.28667 -12.11541 -12.08844 -11.99338 -11.78857 -11.49890 -11.46448 -11.28562 -11.22450 -11.21372 -11.16162 -10.63912 -10.30393 -10.22706 -9.39948 -8.27151 -6.43048 1.41153 1.43268 1.53011 1.67298 2.13342 2.37593 2.99336 3.06219 3.58652 3.66033 3.75916 3.81036 4.08433 4.15959 4.22522 4.30424 4.33675 4.38034 4.47361 4.54096 4.58424 4.59452 4.67223 4.71253 4.73166 4.83006 4.89634 4.94186 5.03116 5.05993 5.12896 5.13872 5.19496 5.24237 5.27744 5.29547 5.36791 5.37201 5.45087 5.48727 5.50012 5.56301 5.62264 5.75674 6.01282 6.17499 6.63779 7.05908 7.28900 7.38090 7.56168 8.79148 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026323 B = 0.002733 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.437361 B =10241.589057 C =10748.784114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.082 4.082 4 H 0.070 0.930 5 C -0.111 4.111 6 C -0.123 4.123 7 C -0.123 4.123 8 C -0.090 4.090 9 H 0.093 0.907 10 C 0.149 3.851 11 N -0.726 5.726 12 C 0.708 3.292 13 O -0.647 6.647 14 N -0.635 5.635 15 C 0.108 3.892 16 C -0.111 4.111 17 C 0.233 3.767 18 O -0.589 6.589 19 C -0.556 4.556 20 H 0.069 0.931 21 C 0.023 3.977 22 N -0.918 5.918 23 Si 0.965 3.035 24 H -0.271 1.271 25 H -0.286 1.286 26 H -0.267 1.267 27 C 0.138 3.862 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.409 0.591 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.378 0.622 47 H 0.271 0.729 48 H 0.029 0.971 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 -0.585 -19.283 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.101 4.101 4 H 0.089 0.911 5 C -0.149 4.149 6 C -0.160 4.160 7 C -0.160 4.160 8 C -0.108 4.108 9 H 0.112 0.888 10 C 0.025 3.975 11 N -0.383 5.383 12 C 0.410 3.590 13 O -0.530 6.530 14 N -0.372 5.372 15 C -0.014 4.014 16 C -0.149 4.149 17 C 0.193 3.807 18 O -0.398 6.398 19 C -0.594 4.594 20 H 0.087 0.913 21 C -0.177 4.177 22 N -0.558 5.558 23 Si 0.790 3.210 24 H -0.196 1.196 25 H -0.212 1.212 26 H -0.192 1.192 27 C 0.014 3.986 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.245 0.755 42 H 0.089 0.911 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.229 0.771 47 H 0.080 0.920 48 H 0.048 0.952 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -14.831 -0.600 -19.061 24.159 hybrid contribution 0.675 -0.193 1.810 1.941 sum -14.156 -0.794 -17.252 22.330 Atomic orbital electron populations 1.21764 0.95293 1.01785 1.01969 1.21547 0.96405 0.95562 1.01992 1.22131 0.92921 0.96581 0.98495 0.91149 1.22389 0.99060 0.97322 0.96121 1.22112 0.95656 0.98630 0.99627 1.22227 0.99424 0.95693 0.98691 1.22257 0.96964 0.99145 0.92476 0.88844 1.21287 0.77799 1.00747 0.97674 1.44943 1.07927 1.79661 1.05761 1.15799 0.80751 0.78054 0.84435 1.90842 1.64187 1.60980 1.36993 1.47879 1.03249 1.76123 1.09911 1.22411 0.89145 1.01310 0.88499 1.22729 0.97030 1.00378 0.94714 1.19705 0.86407 0.81350 0.93263 1.86055 1.86253 1.32416 1.35092 1.21862 1.33932 1.09518 0.94107 0.91277 1.25853 0.95661 0.96840 0.99380 1.69685 1.44658 1.27007 1.14471 0.85439 0.78738 0.79288 0.77491 1.19632 1.21198 1.19154 1.22381 0.93623 0.98068 0.84561 0.92602 0.93298 0.91814 0.91026 0.93042 0.90999 0.90633 0.92075 0.90841 0.92998 0.90787 0.93052 0.93471 0.75467 0.91146 0.87981 0.89038 0.89804 0.77131 0.91977 0.95217 0.95789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.80 71.98 0.71 -1.17 16 2 C -0.12 -1.64 5.43 30.59 0.17 -1.47 16 3 C -0.08 -1.19 2.30 -9.49 -0.02 -1.22 16 4 H 0.07 1.17 8.06 -2.39 -0.02 1.15 16 5 C -0.11 -1.27 5.69 31.67 0.18 -1.09 16 6 C -0.12 -1.52 6.80 31.32 0.21 -1.31 16 7 C -0.12 -1.88 6.05 31.32 0.19 -1.69 16 8 C -0.09 -1.48 2.38 -9.71 -0.02 -1.50 16 9 H 0.09 1.36 8.05 -2.38 -0.02 1.34 16 10 C 0.15 3.74 4.98 86.38 0.43 4.17 16 11 N -0.73 -20.95 5.35 -478.54 -2.56 -23.51 16 12 C 0.71 29.30 8.49 179.05 1.52 30.82 16 13 O -0.65 -33.10 16.67 -3.99 -0.07 -33.17 16 14 N -0.63 -26.59 3.33 -829.66 -2.76 -29.35 16 15 C 0.11 3.51 6.57 86.85 0.57 4.08 16 16 C -0.11 -4.18 6.22 31.98 0.20 -3.98 16 17 C 0.23 11.44 0.86 -10.35 -0.01 11.43 16 18 O -0.59 -30.35 13.09 -148.98 -1.95 -32.30 16 19 C -0.56 -29.38 8.11 25.60 0.21 -29.17 16 20 H 0.07 3.53 7.76 -2.91 -0.02 3.50 16 21 C 0.02 1.23 5.28 84.66 0.45 1.67 16 22 N -0.92 -50.79 10.98 21.45 0.24 -50.56 16 23 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 25 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 27 C 0.14 7.06 5.54 86.73 0.48 7.54 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.06 0.67 7.65 -2.39 -0.02 0.65 16 31 H 0.07 0.87 7.99 -2.39 -0.02 0.85 16 32 H 0.05 0.86 7.77 -2.39 -0.02 0.84 16 33 H 0.07 0.74 8.09 -2.38 -0.02 0.72 16 34 H 0.07 0.75 7.93 -2.38 -0.02 0.73 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 0.98 7.77 -2.39 -0.02 0.96 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 1.42 7.77 -2.39 -0.02 1.40 16 40 H 0.05 1.34 8.05 -2.38 -0.02 1.32 16 41 H 0.41 9.11 6.80 -92.71 -0.63 8.48 16 42 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.10 2.38 7.30 -2.39 -0.02 2.37 16 44 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 45 H 0.08 3.02 8.03 -2.39 -0.02 3.00 16 46 H 0.38 20.57 6.98 -74.06 -0.52 20.05 16 47 H 0.27 14.33 8.31 -92.71 -0.77 13.55 16 48 H 0.03 1.67 7.82 -2.39 -0.02 1.65 16 49 H 0.02 1.37 8.07 -2.38 -0.02 1.35 16 Total: -1.00 -67.62 381.99 -0.04 -67.66 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -0.22 Total: 39.64 kcal Atomic # 6 Polarization: 11.86 SS G_CDS: 5.26 Total: 17.12 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -5.09 Total: -103.42 kcal Atomic # 8 Polarization: -63.45 SS G_CDS: -2.02 Total: -65.47 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -67.62 -0.04 -67.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592028263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.384 kcal (2) G-P(sol) polarization free energy of solvation -67.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds