Wall clock time and date at job start Tue Mar 31 2020 10:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47139 * 2 1 4 4 H 1.08995 * 109.71202 * 62.52817 * 3 2 1 5 5 C 1.53293 * 109.68030 * 301.98310 * 3 2 1 6 6 O 1.42965 * 109.22345 * 187.97594 * 5 3 2 7 7 C 1.42960 * 114.16469 * 62.58649 * 6 5 3 8 8 C 1.53000 * 109.51651 * 57.34222 * 7 6 5 9 9 C 1.52996 * 109.51302 * 177.49745 * 7 6 5 10 10 C 1.53718 * 109.14639 * 297.28971 * 7 6 5 11 11 N 1.47150 * 108.16292 * 52.53949 * 10 7 6 12 12 C 1.34772 * 120.98352 * 129.43787 * 11 10 7 13 13 O 1.21589 * 120.00004 * 174.81418 * 12 11 10 14 14 N 1.34772 * 119.99843 * 355.08293 * 12 11 10 15 15 C 1.46509 * 120.00069 * 184.93369 * 14 12 11 16 16 C 1.53001 * 109.47203 * 184.84186 * 15 14 12 17 17 C 1.50698 * 115.54861 * 305.81503 * 16 15 14 18 18 H 1.08001 * 119.99494 * 144.18607 * 17 16 15 19 19 C 1.37879 * 120.00127 * 324.18498 * 17 16 15 20 20 N 1.31509 * 119.99856 * 3.33694 * 19 17 16 21 21 Si 1.86807 * 119.99796 * 183.33782 * 19 17 16 22 22 H 1.48494 * 109.47143 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46620 * 119.99894 * 21 19 17 24 24 H 1.48494 * 109.46856 * 239.99661 * 21 19 17 25 25 C 1.52999 * 117.49712 * 160.14432 * 16 15 14 26 26 C 1.52998 * 117.49855 * 91.48718 * 16 15 14 27 27 H 1.08998 * 109.47022 * 295.80469 * 1 2 3 28 28 H 1.09000 * 109.46659 * 55.79665 * 1 2 3 29 29 H 1.08991 * 109.47305 * 175.79510 * 1 2 3 30 30 H 1.09002 * 109.46827 * 239.99638 * 2 1 3 31 31 H 1.09001 * 109.46862 * 119.99709 * 2 1 3 32 32 H 1.09000 * 109.51512 * 307.90193 * 5 3 2 33 33 H 1.08999 * 109.50787 * 68.00578 * 5 3 2 34 34 H 1.08998 * 109.46735 * 59.99826 * 8 7 6 35 35 H 1.08996 * 109.47459 * 180.02562 * 8 7 6 36 36 H 1.09006 * 109.47048 * 300.00256 * 8 7 6 37 37 H 1.08995 * 109.47850 * 59.99828 * 9 7 6 38 38 H 1.09007 * 109.47190 * 179.97438 * 9 7 6 39 39 H 1.08996 * 109.46838 * 299.99539 * 9 7 6 40 40 H 1.09000 * 109.83329 * 292.85392 * 10 7 6 41 41 H 1.08998 * 109.74827 * 172.16957 * 10 7 6 42 42 H 0.97001 * 120.00415 * 4.92904 * 14 12 11 43 43 H 1.08995 * 109.46739 * 304.84148 * 15 14 12 44 44 H 1.08998 * 109.46737 * 64.83674 * 15 14 12 45 45 H 0.97010 * 119.99738 * 185.00163 * 20 19 17 46 46 H 1.09003 * 117.49781 * 0.02562 * 25 16 15 47 47 H 1.08996 * 117.49732 * 145.01861 * 25 16 15 48 48 H 1.08996 * 117.49786 * 214.98256 * 26 16 15 49 49 H 1.09005 * 117.49677 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7163 1.9468 0.9104 5 6 1.4913 2.1840 -1.2243 6 8 2.1171 3.4661 -1.3176 7 6 3.5320 3.4137 -1.5147 8 6 3.8425 2.6117 -2.7802 9 6 4.0805 4.8345 -1.6614 10 6 4.1856 2.7359 -0.2997 11 7 3.5098 1.4484 -0.0741 12 6 4.2161 0.3092 0.0664 13 8 3.6472 -0.7284 0.3456 14 7 5.5538 0.3213 -0.0975 15 6 6.3088 -0.9334 -0.0520 16 6 7.8059 -0.6315 -0.1435 17 6 8.2295 0.2035 -1.3243 18 1 9.0283 0.9226 -1.2183 19 6 7.5974 0.0494 -2.5399 20 7 6.5818 -0.7785 -2.6526 21 14 8.1837 1.0165 -4.0268 22 1 9.3342 1.8714 -3.6389 23 1 8.6052 0.0748 -5.0948 24 1 7.0780 1.8713 -4.5285 25 6 8.7752 -1.7108 0.3427 26 6 8.5691 -0.4385 1.1684 27 1 -0.3633 0.4473 0.9252 28 1 -0.3632 0.5777 -0.8499 29 1 -0.3633 -1.0248 -0.0753 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7050 1.6082 -2.1248 33 1 0.4137 2.3107 -1.1203 34 1 3.3738 3.0924 -3.6389 35 1 4.9214 2.5719 -2.9296 36 1 3.4531 1.5992 -2.6733 37 1 3.8607 5.4039 -0.7585 38 1 5.1594 4.7938 -1.8113 39 1 3.6122 5.3179 -2.5188 40 1 4.0742 3.3684 0.5810 41 1 5.2437 2.5653 -0.4981 42 1 6.0168 1.1608 -0.2455 43 1 6.0989 -1.4499 0.8846 44 1 6.0136 -1.5655 -0.8895 45 1 6.1835 -0.9419 -3.5219 46 1 8.3463 -2.6361 0.7274 47 1 9.7195 -1.8167 -0.1913 48 1 9.3778 0.2922 1.1774 49 1 8.0045 -0.5262 2.0967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593400253.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:18 Heat of formation + Delta-G solvation = -31.614980 kcal Electronic energy + Delta-G solvation = -28727.692364 eV Core-core repulsion = 25077.578988 eV Total energy + Delta-G solvation = -3650.113376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53213 -38.38959 -36.82453 -35.13658 -34.21643 -32.82896 -32.25606 -31.75121 -27.97781 -27.13131 -26.30163 -25.79015 -25.19877 -23.58418 -21.27256 -21.14985 -20.06106 -19.22986 -18.76945 -17.33913 -16.61571 -16.09959 -15.75136 -15.34513 -14.87668 -14.81925 -14.50920 -14.07589 -13.92728 -13.64070 -13.46828 -13.06396 -12.87577 -12.71346 -12.43656 -12.25913 -12.15895 -11.86543 -11.75579 -11.62745 -11.40137 -11.27910 -11.13873 -11.10389 -10.97903 -10.76106 -10.53936 -10.42951 -10.30996 -10.26699 -9.82791 -9.64389 -9.01754 -8.87253 -8.56188 -8.30515 -8.12709 -7.62142 -6.03290 -4.23192 3.13933 3.18363 3.25928 3.28341 3.78942 4.03599 4.24605 4.62023 4.75353 4.95631 4.99996 5.04021 5.14813 5.23309 5.29918 5.45210 5.48264 5.56329 5.65961 5.69276 5.71546 5.78441 5.78744 5.91928 5.96643 5.99040 6.03457 6.07633 6.24758 6.25373 6.31152 6.46958 6.53956 6.60874 6.62480 6.71119 6.75324 6.88229 7.01661 7.13457 7.25315 7.30860 7.54938 7.64705 7.79124 7.96853 8.29810 8.73218 8.94648 9.39703 9.50246 10.85097 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.006082 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.970576 B = 4602.784142 C = 5732.143294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.114 4.114 3 C 0.137 3.863 4 H 0.068 0.932 5 C 0.047 3.953 6 O -0.376 6.376 7 C 0.100 3.900 8 C -0.173 4.173 9 C -0.136 4.136 10 C 0.093 3.907 11 N -0.636 5.636 12 C 0.706 3.294 13 O -0.600 6.600 14 N -0.700 5.700 15 C 0.184 3.816 16 C 0.035 3.965 17 C -0.495 4.495 18 H 0.060 0.940 19 C 0.076 3.924 20 N -0.863 5.863 21 Si 0.886 3.114 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 C -0.197 4.197 26 C -0.212 4.212 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.393 0.607 43 H 0.019 0.981 44 H 0.109 0.891 45 H 0.261 0.739 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.074 0.926 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.184 7.867 2.221 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.151 4.151 3 C 0.033 3.967 4 H 0.086 0.914 5 C -0.031 4.031 6 O -0.295 6.295 7 C 0.060 3.940 8 C -0.231 4.231 9 C -0.194 4.194 10 C -0.032 4.032 11 N -0.375 5.375 12 C 0.408 3.592 13 O -0.481 6.481 14 N -0.352 5.352 15 C 0.060 3.940 16 C 0.034 3.966 17 C -0.533 4.533 18 H 0.078 0.922 19 C -0.128 4.128 20 N -0.499 5.499 21 Si 0.713 3.287 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.208 1.208 25 C -0.236 4.236 26 C -0.249 4.249 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.229 0.771 43 H 0.037 0.963 44 H 0.126 0.874 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.818 7.213 2.284 11.619 hybrid contribution 0.858 0.608 -0.996 1.448 sum -7.960 7.820 1.288 11.233 Atomic orbital electron populations 1.22005 0.97342 1.01513 1.00899 1.22009 0.92898 0.93952 1.06256 1.21656 0.79223 0.98098 0.97752 0.91440 1.23163 0.97295 0.84976 0.97627 1.87931 1.19952 1.28215 1.93378 1.21932 0.81581 0.96267 0.94230 1.22329 1.03199 1.00912 0.96623 1.21728 1.01081 0.93837 1.02752 1.22340 0.97895 0.85401 0.97532 1.47263 1.05654 1.06306 1.78287 1.15875 0.82224 0.82695 0.78393 1.90813 1.68915 1.31206 1.57176 1.45069 1.04106 1.11687 1.74353 1.20920 0.88780 0.84668 0.99594 1.19260 0.89341 0.96666 0.91296 1.20539 1.18291 1.21142 0.93295 0.92163 1.24971 0.93923 0.95305 0.98636 1.69916 1.21317 1.35049 1.23579 0.86638 0.78825 0.80119 0.83095 1.19737 1.20891 1.20794 1.22928 1.03039 0.92099 1.05540 1.22941 1.04897 1.00898 0.96168 0.93187 0.93325 0.92652 0.91113 0.88045 0.92290 0.88197 0.92371 0.90957 0.91498 0.91779 0.90647 0.91676 0.91345 0.88940 0.77124 0.96271 0.87360 0.92878 0.91471 0.90264 0.90724 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.64 37.16 0.36 -1.57 16 2 C -0.11 -1.80 3.94 -26.73 -0.11 -1.90 16 3 C 0.14 2.08 3.23 -67.42 -0.22 1.87 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 5 C 0.05 0.64 5.23 37.31 0.20 0.84 16 6 O -0.38 -5.45 10.22 -35.23 -0.36 -5.81 16 7 C 0.10 1.41 1.12 -90.25 -0.10 1.31 16 8 C -0.17 -2.72 8.10 37.16 0.30 -2.42 16 9 C -0.14 -1.58 8.85 37.16 0.33 -1.25 16 10 C 0.09 1.39 5.34 -3.31 -0.02 1.38 16 11 N -0.64 -10.97 2.53 -170.17 -0.43 -11.40 16 12 C 0.71 14.76 8.13 -86.93 -0.71 14.05 16 13 O -0.60 -13.93 12.06 5.29 0.06 -13.87 16 14 N -0.70 -14.98 5.07 -65.22 -0.33 -15.31 16 15 C 0.18 4.32 4.63 -4.04 -0.02 4.30 16 16 C 0.04 0.81 2.06 -155.66 -0.32 0.49 16 17 C -0.50 -12.16 8.29 -34.44 -0.29 -12.45 16 18 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 19 C 0.08 1.87 5.31 -17.82 -0.09 1.77 16 20 N -0.86 -22.02 10.19 55.43 0.57 -21.46 16 21 Si 0.89 19.32 29.54 -169.99 -5.02 14.30 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.20 -4.27 9.96 -26.70 -0.27 -4.53 16 26 C -0.21 -4.38 9.92 -26.70 -0.26 -4.65 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.52 6.36 -51.93 -0.33 0.19 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 1.31 7.37 -51.93 -0.38 0.93 16 31 H 0.10 1.87 6.18 -51.93 -0.32 1.55 16 32 H 0.06 0.87 6.25 -51.93 -0.32 0.55 16 33 H 0.10 1.14 6.79 -51.93 -0.35 0.79 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.19 6.11 -51.93 -0.32 0.87 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.45 5.66 -51.93 -0.29 1.16 16 42 H 0.39 8.13 5.44 -40.82 -0.22 7.91 16 43 H 0.02 0.45 8.05 -51.93 -0.42 0.04 16 44 H 0.11 2.88 5.93 -51.93 -0.31 2.57 16 45 H 0.26 6.56 8.32 -40.82 -0.34 6.22 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 48 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 49 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -26.76 370.83 -9.45 -36.21 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -8.31 Total: 14.50 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.22 Total: -2.76 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.20 Total: -48.17 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.30 Total: -19.68 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -26.76 -9.45 -36.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593400253.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.599 kcal (2) G-P(sol) polarization free energy of solvation -26.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds