Wall clock time and date at job start Tue Mar 31 2020 10:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47139 * 2 1 4 4 H 1.08995 * 109.71202 * 62.52817 * 3 2 1 5 5 C 1.53293 * 109.68030 * 301.98310 * 3 2 1 6 6 O 1.42965 * 109.22345 * 187.97594 * 5 3 2 7 7 C 1.42960 * 114.16469 * 62.58649 * 6 5 3 8 8 C 1.53000 * 109.51651 * 57.34222 * 7 6 5 9 9 C 1.52996 * 109.51302 * 177.49745 * 7 6 5 10 10 C 1.53718 * 109.14639 * 297.28971 * 7 6 5 11 11 N 1.47150 * 108.16292 * 52.53949 * 10 7 6 12 12 C 1.34772 * 120.98352 * 129.43787 * 11 10 7 13 13 O 1.21589 * 120.00004 * 174.81418 * 12 11 10 14 14 N 1.34772 * 119.99843 * 355.08293 * 12 11 10 15 15 C 1.46509 * 120.00069 * 184.93369 * 14 12 11 16 16 C 1.53001 * 109.47203 * 184.84186 * 15 14 12 17 17 C 1.50698 * 115.54861 * 305.81503 * 16 15 14 18 18 H 1.08001 * 119.99494 * 144.18607 * 17 16 15 19 19 C 1.37879 * 120.00127 * 324.18498 * 17 16 15 20 20 N 1.31509 * 119.99856 * 3.33694 * 19 17 16 21 21 Si 1.86807 * 119.99796 * 183.33782 * 19 17 16 22 22 H 1.48494 * 109.47143 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46620 * 119.99894 * 21 19 17 24 24 H 1.48494 * 109.46856 * 239.99661 * 21 19 17 25 25 C 1.52999 * 117.49712 * 160.14432 * 16 15 14 26 26 C 1.52998 * 117.49855 * 91.48718 * 16 15 14 27 27 H 1.08998 * 109.47022 * 295.80469 * 1 2 3 28 28 H 1.09000 * 109.46659 * 55.79665 * 1 2 3 29 29 H 1.08991 * 109.47305 * 175.79510 * 1 2 3 30 30 H 1.09002 * 109.46827 * 239.99638 * 2 1 3 31 31 H 1.09001 * 109.46862 * 119.99709 * 2 1 3 32 32 H 1.09000 * 109.51512 * 307.90193 * 5 3 2 33 33 H 1.08999 * 109.50787 * 68.00578 * 5 3 2 34 34 H 1.08998 * 109.46735 * 59.99826 * 8 7 6 35 35 H 1.08996 * 109.47459 * 180.02562 * 8 7 6 36 36 H 1.09006 * 109.47048 * 300.00256 * 8 7 6 37 37 H 1.08995 * 109.47850 * 59.99828 * 9 7 6 38 38 H 1.09007 * 109.47190 * 179.97438 * 9 7 6 39 39 H 1.08996 * 109.46838 * 299.99539 * 9 7 6 40 40 H 1.09000 * 109.83329 * 292.85392 * 10 7 6 41 41 H 1.08998 * 109.74827 * 172.16957 * 10 7 6 42 42 H 0.97001 * 120.00415 * 4.92904 * 14 12 11 43 43 H 1.08995 * 109.46739 * 304.84148 * 15 14 12 44 44 H 1.08998 * 109.46737 * 64.83674 * 15 14 12 45 45 H 0.97010 * 119.99738 * 185.00163 * 20 19 17 46 46 H 1.09003 * 117.49781 * 0.02562 * 25 16 15 47 47 H 1.08996 * 117.49732 * 145.01861 * 25 16 15 48 48 H 1.08996 * 117.49786 * 214.98256 * 26 16 15 49 49 H 1.09005 * 117.49677 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7163 1.9468 0.9104 5 6 1.4913 2.1840 -1.2243 6 8 2.1171 3.4661 -1.3176 7 6 3.5320 3.4137 -1.5147 8 6 3.8425 2.6117 -2.7802 9 6 4.0805 4.8345 -1.6614 10 6 4.1856 2.7359 -0.2997 11 7 3.5098 1.4484 -0.0741 12 6 4.2161 0.3092 0.0664 13 8 3.6472 -0.7284 0.3456 14 7 5.5538 0.3213 -0.0975 15 6 6.3088 -0.9334 -0.0520 16 6 7.8059 -0.6315 -0.1435 17 6 8.2295 0.2035 -1.3243 18 1 9.0283 0.9226 -1.2183 19 6 7.5974 0.0494 -2.5399 20 7 6.5818 -0.7785 -2.6526 21 14 8.1837 1.0165 -4.0268 22 1 9.3342 1.8714 -3.6389 23 1 8.6052 0.0748 -5.0948 24 1 7.0780 1.8713 -4.5285 25 6 8.7752 -1.7108 0.3427 26 6 8.5691 -0.4385 1.1684 27 1 -0.3633 0.4473 0.9252 28 1 -0.3632 0.5777 -0.8499 29 1 -0.3633 -1.0248 -0.0753 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.7050 1.6082 -2.1248 33 1 0.4137 2.3107 -1.1203 34 1 3.3738 3.0924 -3.6389 35 1 4.9214 2.5719 -2.9296 36 1 3.4531 1.5992 -2.6733 37 1 3.8607 5.4039 -0.7585 38 1 5.1594 4.7938 -1.8113 39 1 3.6122 5.3179 -2.5188 40 1 4.0742 3.3684 0.5810 41 1 5.2437 2.5653 -0.4981 42 1 6.0168 1.1608 -0.2455 43 1 6.0989 -1.4499 0.8846 44 1 6.0136 -1.5655 -0.8895 45 1 6.1835 -0.9419 -3.5219 46 1 8.3463 -2.6361 0.7274 47 1 9.7195 -1.8167 -0.1913 48 1 9.3778 0.2922 1.1774 49 1 8.0045 -0.5262 2.0967 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593400253.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:17 Heat of formation + Delta-G solvation = -45.670208 kcal Electronic energy + Delta-G solvation = -28728.301845 eV Core-core repulsion = 25077.578988 eV Total energy + Delta-G solvation = -3650.722856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.89714 -39.86038 -38.54116 -36.44091 -35.63937 -34.40246 -34.05651 -33.04925 -29.18879 -28.33344 -27.78025 -27.42402 -26.80698 -24.84754 -22.96991 -22.44289 -21.45220 -21.03045 -20.18378 -18.89314 -18.07611 -17.61682 -17.09357 -16.82669 -16.61413 -16.17482 -15.73339 -15.66914 -15.41695 -15.06388 -14.92769 -14.66427 -14.16669 -13.98603 -13.79748 -13.60492 -13.38475 -13.25732 -13.17485 -13.07498 -12.83753 -12.77612 -12.59654 -12.46461 -12.26945 -12.24395 -12.13368 -12.04017 -11.68963 -11.51958 -11.45175 -11.05564 -10.85561 -10.68565 -10.21708 -10.06313 -9.70693 -9.18745 -7.92363 -6.17815 1.39099 1.46327 1.54116 1.75037 2.39323 2.42855 2.68461 2.97923 3.25918 3.57382 3.66155 3.82935 3.87384 3.95477 4.00404 4.12586 4.26277 4.35631 4.39988 4.50467 4.54889 4.58654 4.61534 4.70787 4.75034 4.78746 4.81827 4.83744 4.84664 4.92207 4.96049 4.98279 5.11821 5.16672 5.25076 5.28245 5.31727 5.35494 5.43443 5.53328 5.61879 5.77625 5.98095 6.01857 6.12043 6.16356 6.40287 6.83038 7.28989 7.46898 7.85297 8.93427 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.006082 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.970576 B = 4602.784142 C = 5732.143294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C 0.132 3.868 4 H 0.085 0.915 5 C 0.052 3.948 6 O -0.373 6.373 7 C 0.103 3.897 8 C -0.167 4.167 9 C -0.132 4.132 10 C 0.089 3.911 11 N -0.633 5.633 12 C 0.700 3.300 13 O -0.630 6.630 14 N -0.699 5.699 15 C 0.199 3.801 16 C 0.008 3.992 17 C -0.501 4.501 18 H 0.057 0.943 19 C 0.042 3.958 20 N -0.884 5.884 21 Si 0.939 3.061 22 H -0.267 1.267 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.198 4.198 26 C -0.188 4.188 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.132 0.868 34 H 0.071 0.929 35 H 0.055 0.945 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.396 0.604 43 H 0.010 0.990 44 H 0.074 0.926 45 H 0.254 0.746 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.854 10.319 2.565 13.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.142 4.142 3 C 0.029 3.971 4 H 0.103 0.897 5 C -0.025 4.025 6 O -0.292 6.292 7 C 0.063 3.937 8 C -0.224 4.224 9 C -0.190 4.190 10 C -0.035 4.035 11 N -0.371 5.371 12 C 0.402 3.598 13 O -0.514 6.514 14 N -0.352 5.352 15 C 0.075 3.925 16 C 0.008 3.992 17 C -0.539 4.539 18 H 0.075 0.925 19 C -0.160 4.160 20 N -0.520 5.520 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.237 4.237 26 C -0.225 4.225 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.150 0.850 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.232 0.768 43 H 0.028 0.972 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.092 0.908 47 H 0.097 0.903 48 H 0.103 0.897 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.494 9.711 2.632 13.834 hybrid contribution 1.059 -0.198 -1.078 1.524 sum -8.435 9.513 1.554 12.808 Atomic orbital electron populations 1.21920 0.93941 1.02257 1.02682 1.21745 0.95733 0.93813 1.02895 1.21892 0.77895 0.97934 0.99383 0.89710 1.23198 0.98852 0.84437 0.96013 1.87947 1.19878 1.28246 1.93162 1.21980 0.81628 0.97532 0.92598 1.22262 1.01953 0.99840 0.98360 1.21737 1.01376 0.91905 1.03965 1.22547 0.97335 0.84519 0.99070 1.47315 1.06598 1.06045 1.77186 1.16081 0.82091 0.83403 0.78248 1.90811 1.69399 1.32780 1.58372 1.44935 1.04418 1.11077 1.74726 1.20536 0.89479 0.85058 0.97457 1.19308 0.89216 0.98107 0.92607 1.20668 1.18091 1.21176 0.93939 0.92452 1.25498 0.93943 0.95949 1.00610 1.70093 1.22199 1.36315 1.23428 0.85810 0.78560 0.78909 0.80201 1.19112 1.21760 1.20275 1.22950 1.02437 0.92647 1.05617 1.22921 1.04131 1.00114 0.95322 0.91305 0.91458 0.92593 0.94811 0.91103 0.93783 0.85012 0.91038 0.92577 0.94282 0.90198 0.90050 0.90821 0.89091 0.89930 0.76757 0.97208 0.90845 0.93568 0.90820 0.90297 0.89717 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.64 71.98 0.69 -2.68 16 2 C -0.10 -3.34 3.94 30.59 0.12 -3.22 16 3 C 0.13 3.89 3.23 44.96 0.15 4.04 16 4 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 5 C 0.05 1.33 5.23 72.08 0.38 1.71 16 6 O -0.37 -9.82 10.22 -148.98 -1.52 -11.34 16 7 C 0.10 2.71 1.12 -10.55 -0.01 2.70 16 8 C -0.17 -5.16 8.10 71.98 0.58 -4.57 16 9 C -0.13 -2.67 8.85 71.98 0.64 -2.03 16 10 C 0.09 2.56 5.34 86.50 0.46 3.02 16 11 N -0.63 -21.82 2.53 -810.58 -2.05 -23.87 16 12 C 0.70 30.19 8.13 179.06 1.46 31.64 16 13 O -0.63 -30.73 12.06 -4.00 -0.05 -30.78 16 14 N -0.70 -30.76 5.07 -478.53 -2.43 -33.19 16 15 C 0.20 9.67 4.63 86.38 0.40 10.07 16 16 C 0.01 0.39 2.06 -52.93 -0.11 0.28 16 17 C -0.50 -24.64 8.29 25.60 0.21 -24.43 16 18 H 0.06 2.81 7.82 -2.91 -0.02 2.78 16 19 C 0.04 2.08 5.31 84.66 0.45 2.53 16 20 N -0.88 -46.50 10.19 21.45 0.22 -46.28 16 21 Si 0.94 39.79 29.54 68.60 2.03 41.82 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 25 C -0.20 -8.48 9.96 30.62 0.30 -8.17 16 26 C -0.19 -7.54 9.92 30.62 0.30 -7.24 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.26 6.36 -2.39 -0.02 1.25 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 1.31 7.37 -2.39 -0.02 1.29 16 31 H 0.07 2.71 6.18 -2.39 -0.01 2.69 16 32 H 0.04 1.28 6.25 -2.39 -0.01 1.26 16 33 H 0.13 2.54 6.79 -2.39 -0.02 2.52 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.41 6.11 -2.38 -0.01 1.39 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.08 2.55 5.66 -2.39 -0.01 2.54 16 42 H 0.40 16.65 5.44 -92.71 -0.50 16.15 16 43 H 0.01 0.48 8.05 -2.39 -0.02 0.46 16 44 H 0.07 4.11 5.93 -2.39 -0.01 4.10 16 45 H 0.25 13.26 8.32 -92.70 -0.77 12.49 16 46 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 47 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 48 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 49 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 Total: -1.00 -59.09 370.83 2.65 -56.44 By element: Atomic # 1 Polarization: 43.10 SS G_CDS: 0.43 Total: 43.53 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 6.03 Total: 3.66 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -4.26 Total: -103.33 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -1.57 Total: -42.11 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -59.09 2.65 -56.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593400253.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.771 kcal (2) G-P(sol) polarization free energy of solvation -59.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds