Wall clock time and date at job start Tue Mar 31 2020 10:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47606 * 2 1 4 4 H 1.08997 * 109.51197 * 304.90271 * 3 2 1 5 5 C 1.53296 * 109.51744 * 184.74644 * 3 2 1 6 6 N 1.47146 * 108.38652 * 187.77716 * 5 3 2 7 7 C 1.34783 * 120.97994 * 230.55897 * 6 5 3 8 8 O 1.21590 * 119.99938 * 174.91028 * 7 6 5 9 9 N 1.34771 * 120.00043 * 354.90354 * 7 6 5 10 10 C 1.46503 * 120.00346 * 184.98902 * 9 7 6 11 11 C 1.52995 * 109.47230 * 184.95803 * 10 9 7 12 12 C 1.50699 * 115.55241 * 304.38490 * 11 10 9 13 13 H 1.07999 * 119.99954 * 143.08503 * 12 11 10 14 14 C 1.37876 * 119.99747 * 323.08471 * 12 11 10 15 15 N 1.31512 * 119.99862 * 168.84217 * 14 12 11 16 16 Si 1.86799 * 120.00284 * 348.83764 * 14 12 11 17 17 H 1.48497 * 109.47110 * 95.54966 * 16 14 12 18 18 H 1.48501 * 109.47453 * 215.55399 * 16 14 12 19 19 H 1.48506 * 109.46845 * 335.55038 * 16 14 12 20 20 C 1.52999 * 117.49718 * 158.71362 * 11 10 9 21 21 C 1.53002 * 117.49869 * 90.05855 * 11 10 9 22 22 C 1.47151 * 118.03792 * 50.53203 * 6 5 3 23 23 H 1.08999 * 109.71428 * 189.72457 * 22 6 5 24 24 C 1.53004 * 109.67688 * 69.19124 * 22 6 5 25 25 C 1.52999 * 109.47212 * 66.07446 * 24 22 6 26 26 C 1.53291 * 108.38523 * 309.46550 * 22 6 5 27 27 O 1.42961 * 109.50932 * 64.99965 * 3 2 1 28 28 H 1.08997 * 109.46857 * 59.99566 * 1 2 3 29 29 H 1.08999 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46785 * 299.99928 * 1 2 3 31 31 H 1.09009 * 109.47230 * 239.99766 * 2 1 3 32 32 H 1.09005 * 109.47119 * 120.00465 * 2 1 3 33 33 H 1.09001 * 109.67803 * 307.50307 * 5 3 2 34 34 H 1.09001 * 109.68082 * 68.01200 * 5 3 2 35 35 H 0.97007 * 119.99834 * 4.98827 * 9 7 6 36 36 H 1.09007 * 109.46708 * 304.95884 * 10 9 7 37 37 H 1.08999 * 109.46921 * 64.95206 * 10 9 7 38 38 H 0.97006 * 119.99755 * 180.02562 * 15 14 12 39 39 H 1.08999 * 117.49902 * 0.02562 * 20 11 10 40 40 H 1.09003 * 117.50139 * 145.02134 * 20 11 10 41 41 H 1.09005 * 117.49917 * 214.98095 * 21 11 10 42 42 H 1.08997 * 117.49833 * 359.97104 * 21 11 10 43 43 H 1.08993 * 109.46956 * 306.07108 * 24 22 6 44 44 H 1.09002 * 109.46618 * 186.07444 * 24 22 6 45 45 H 1.09002 * 109.47327 * 299.99564 * 25 24 22 46 46 H 1.09003 * 109.47627 * 59.99862 * 25 24 22 47 47 H 1.09002 * 109.46757 * 179.97438 * 25 24 22 48 48 H 1.09002 * 109.51372 * 172.22110 * 26 22 6 49 49 H 1.08991 * 109.51308 * 292.32564 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6072 1.9816 -0.8426 5 6 3.5684 1.4452 -0.1196 6 7 4.0463 2.8237 0.0708 7 6 4.8947 3.3916 -0.8092 8 8 5.2058 4.5606 -0.6861 9 7 5.3983 2.6637 -1.8255 10 6 6.4035 3.2477 -2.7171 11 6 6.7136 2.2657 -3.8486 12 6 7.1573 0.8926 -3.4143 13 1 6.8443 0.0224 -3.9720 14 6 7.9630 0.7474 -2.3049 15 7 8.1713 -0.4470 -1.7954 16 14 8.7587 2.2470 -1.5255 17 1 7.9174 2.7244 -0.3988 18 1 10.1065 1.8849 -1.0182 19 1 8.8847 3.3240 -2.5402 20 6 7.3282 2.8347 -5.1291 21 6 5.8710 2.3661 -5.1218 22 6 3.5702 3.5643 1.2499 23 1 3.8631 4.6111 1.1696 24 6 4.1731 2.9565 2.5180 25 6 5.6873 3.1757 2.5186 26 6 2.0419 3.4584 1.3027 27 8 1.6623 2.0824 1.2213 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9976 0.7987 0.6460 34 1 3.8600 1.0879 -1.1072 35 1 5.0953 1.7531 -1.9666 36 1 6.0198 4.1773 -3.1377 37 1 7.3139 3.4523 -2.1538 38 1 8.7379 -0.5491 -1.0146 39 1 7.5120 3.9084 -5.1651 40 1 8.0532 2.2156 -5.6575 41 1 5.6379 1.4389 -5.6455 42 1 5.0955 3.1313 -5.1531 43 1 3.9607 1.8878 2.5451 44 1 3.7362 3.4361 3.3939 45 1 6.1243 2.6961 1.6427 46 1 5.8998 4.2445 2.4915 47 1 6.1167 2.7431 3.4222 48 1 1.6798 3.8810 2.2400 49 1 1.6099 4.0062 0.4654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593400582.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:18 Heat of formation + Delta-G solvation = -41.478797 kcal Electronic energy + Delta-G solvation = -28254.388844 eV Core-core repulsion = 24603.847741 eV Total energy + Delta-G solvation = -3650.541103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.53146 -38.62776 -37.08625 -35.34406 -34.34827 -33.37172 -32.34841 -32.23290 -29.36707 -27.95695 -26.61847 -25.07770 -24.20030 -23.27580 -21.70500 -21.47248 -20.66772 -19.46594 -18.76625 -18.02790 -16.80874 -16.39024 -16.02868 -15.88028 -15.39630 -14.97645 -14.76351 -14.33007 -14.05755 -13.90687 -13.67119 -13.50745 -13.26796 -13.13052 -12.92701 -12.54164 -12.27942 -12.11990 -12.01870 -11.84148 -11.42250 -11.29854 -11.10134 -11.04628 -10.89084 -10.86187 -10.66872 -10.51011 -10.36931 -10.03485 -9.98540 -9.73737 -9.47349 -9.33861 -9.00493 -8.49990 -8.42357 -7.96182 -6.28740 -4.24419 2.88820 3.27586 3.35866 3.38375 3.64164 3.66046 4.28913 4.30036 4.62502 4.71776 4.79853 4.90968 4.99430 5.02569 5.19968 5.23255 5.28360 5.37006 5.44360 5.47935 5.53271 5.57862 5.65159 5.73810 5.77660 5.86894 5.87997 5.89370 5.97229 6.06610 6.08129 6.12774 6.22352 6.22909 6.28197 6.41790 6.46564 6.50654 6.62682 6.70506 6.83352 7.06650 7.10943 7.20117 7.34706 7.60261 8.34609 8.49498 8.76294 9.07778 9.36299 10.81920 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.005363 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.007641 B = 5220.137131 C = 5788.874510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.081 3.919 4 H 0.062 0.938 5 C 0.081 3.919 6 N -0.629 5.629 7 C 0.707 3.293 8 O -0.603 6.603 9 N -0.718 5.718 10 C 0.159 3.841 11 C -0.009 4.009 12 C -0.490 4.490 13 H 0.080 0.920 14 C 0.086 3.914 15 N -0.884 5.884 16 Si 0.886 3.114 17 H -0.276 1.276 18 H -0.300 1.300 19 H -0.263 1.263 20 C -0.199 4.199 21 C -0.186 4.186 22 C 0.124 3.876 23 H 0.106 0.894 24 C -0.125 4.125 25 C -0.149 4.149 26 C 0.056 3.944 27 O -0.373 6.373 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.406 0.594 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.267 0.733 39 H 0.070 0.930 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.102 0.898 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.157 3.386 6.203 14.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.022 3.978 4 H 0.080 0.920 5 C -0.042 4.042 6 N -0.367 5.367 7 C 0.409 3.591 8 O -0.483 6.483 9 N -0.374 5.374 10 C 0.036 3.964 11 C -0.010 4.010 12 C -0.527 4.527 13 H 0.098 0.902 14 C -0.118 4.118 15 N -0.520 5.520 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.229 1.229 19 H -0.189 1.189 20 C -0.237 4.237 21 C -0.223 4.223 22 C 0.020 3.980 23 H 0.124 0.876 24 C -0.164 4.164 25 C -0.206 4.206 26 C -0.022 4.022 27 O -0.292 6.292 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.244 0.756 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.120 0.880 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.887 4.005 6.558 15.005 hybrid contribution 0.693 0.442 0.111 0.829 sum -12.195 4.448 6.669 14.593 Atomic orbital electron populations 1.21684 0.95135 1.01486 1.02107 1.21527 0.96739 0.93753 1.03405 1.22522 0.93253 0.94591 0.87445 0.91994 1.22335 0.94479 0.83941 1.03489 1.47232 1.49673 1.14476 1.25345 1.15846 0.78812 0.84718 0.79723 1.90836 1.65308 1.15273 1.76836 1.45239 1.44102 1.17769 1.30331 1.21156 0.89917 0.94889 0.90473 1.19551 0.99956 0.95939 0.85549 1.20298 1.31069 0.89338 1.11967 0.90217 1.24916 0.95394 0.95586 0.95932 1.69908 1.37235 1.22428 1.22388 0.86984 0.78225 0.83092 0.79979 1.20277 1.22864 1.18882 1.23098 0.95659 0.98860 1.06094 1.22816 0.93176 1.01595 1.04747 1.21747 0.93539 0.98135 0.84618 0.87579 1.21765 0.96285 1.01923 0.96387 1.21710 0.95536 1.01749 1.01646 1.22975 0.93461 0.83308 1.02444 1.87917 1.79540 1.23574 1.38120 0.93006 0.92718 0.92081 0.89973 0.90786 0.90531 0.88886 0.75559 0.92750 0.92705 0.92358 0.91182 0.89317 0.89794 0.90911 0.91236 0.91205 0.92531 0.92817 0.93053 0.87960 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.81 37.16 0.36 -0.98 16 2 C -0.12 -1.19 5.64 -26.74 -0.15 -1.34 16 3 C 0.08 0.97 2.78 -26.58 -0.07 0.89 16 4 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 5 C 0.08 1.16 5.45 -3.54 -0.02 1.14 16 6 N -0.63 -10.33 2.25 -170.43 -0.38 -10.71 16 7 C 0.71 14.39 8.04 -86.92 -0.70 13.69 16 8 O -0.60 -13.95 15.79 5.29 0.08 -13.86 16 9 N -0.72 -14.92 5.06 -65.22 -0.33 -15.25 16 10 C 0.16 3.55 4.36 -4.04 -0.02 3.53 16 11 C -0.01 -0.19 1.41 -155.66 -0.22 -0.41 16 12 C -0.49 -12.66 8.86 -34.44 -0.31 -12.96 16 13 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 14 C 0.09 2.32 5.42 -17.82 -0.10 2.23 16 15 N -0.88 -25.09 13.96 55.43 0.77 -24.32 16 16 Si 0.89 22.18 24.03 -169.99 -4.08 18.09 16 17 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 19 H -0.26 -6.43 6.38 56.52 0.36 -6.07 16 20 C -0.20 -4.05 9.96 -26.70 -0.27 -4.31 16 21 C -0.19 -3.61 9.93 -26.70 -0.27 -3.87 16 22 C 0.12 1.74 2.62 -67.42 -0.18 1.57 16 23 H 0.11 1.64 7.06 -51.93 -0.37 1.27 16 24 C -0.13 -1.63 5.34 -26.73 -0.14 -1.77 16 25 C -0.15 -2.27 9.81 37.16 0.36 -1.91 16 26 C 0.06 0.64 6.36 37.31 0.24 0.88 16 27 O -0.37 -4.58 9.65 -35.23 -0.34 -4.92 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 31 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.10 7.50 -51.93 -0.39 0.71 16 34 H 0.09 1.36 5.77 -51.93 -0.30 1.06 16 35 H 0.41 8.13 5.54 -40.82 -0.23 7.91 16 36 H 0.05 1.17 8.06 -51.93 -0.42 0.75 16 37 H 0.06 1.35 2.57 -51.93 -0.13 1.21 16 38 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 41 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.07 0.93 7.12 -51.93 -0.37 0.56 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.06 7.54 -51.93 -0.39 0.67 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -30.17 376.45 -8.59 -38.76 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -8.52 Total: 10.17 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.47 Total: -3.63 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.06 Total: -50.28 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.26 Total: -18.78 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.08 Total: 18.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.17 -8.59 -38.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593400582.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.718 kcal (2) G-P(sol) polarization free energy of solvation -30.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds