Wall clock time and date at job start Tue Mar 31 2020 10:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47606 * 2 1 4 4 H 1.08997 * 109.51197 * 304.90271 * 3 2 1 5 5 C 1.53296 * 109.51744 * 184.74644 * 3 2 1 6 6 N 1.47146 * 108.38652 * 187.77716 * 5 3 2 7 7 C 1.34783 * 120.97994 * 230.55897 * 6 5 3 8 8 O 1.21590 * 119.99938 * 174.91028 * 7 6 5 9 9 N 1.34771 * 120.00043 * 354.90354 * 7 6 5 10 10 C 1.46503 * 120.00346 * 184.98902 * 9 7 6 11 11 C 1.52995 * 109.47230 * 184.95803 * 10 9 7 12 12 C 1.50699 * 115.55241 * 304.38490 * 11 10 9 13 13 H 1.07999 * 119.99954 * 143.08503 * 12 11 10 14 14 C 1.37876 * 119.99747 * 323.08471 * 12 11 10 15 15 N 1.31512 * 119.99862 * 168.84217 * 14 12 11 16 16 Si 1.86799 * 120.00284 * 348.83764 * 14 12 11 17 17 H 1.48497 * 109.47110 * 95.54966 * 16 14 12 18 18 H 1.48501 * 109.47453 * 215.55399 * 16 14 12 19 19 H 1.48506 * 109.46845 * 335.55038 * 16 14 12 20 20 C 1.52999 * 117.49718 * 158.71362 * 11 10 9 21 21 C 1.53002 * 117.49869 * 90.05855 * 11 10 9 22 22 C 1.47151 * 118.03792 * 50.53203 * 6 5 3 23 23 H 1.08999 * 109.71428 * 189.72457 * 22 6 5 24 24 C 1.53004 * 109.67688 * 69.19124 * 22 6 5 25 25 C 1.52999 * 109.47212 * 66.07446 * 24 22 6 26 26 C 1.53291 * 108.38523 * 309.46550 * 22 6 5 27 27 O 1.42961 * 109.50932 * 64.99965 * 3 2 1 28 28 H 1.08997 * 109.46857 * 59.99566 * 1 2 3 29 29 H 1.08999 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46785 * 299.99928 * 1 2 3 31 31 H 1.09009 * 109.47230 * 239.99766 * 2 1 3 32 32 H 1.09005 * 109.47119 * 120.00465 * 2 1 3 33 33 H 1.09001 * 109.67803 * 307.50307 * 5 3 2 34 34 H 1.09001 * 109.68082 * 68.01200 * 5 3 2 35 35 H 0.97007 * 119.99834 * 4.98827 * 9 7 6 36 36 H 1.09007 * 109.46708 * 304.95884 * 10 9 7 37 37 H 1.08999 * 109.46921 * 64.95206 * 10 9 7 38 38 H 0.97006 * 119.99755 * 180.02562 * 15 14 12 39 39 H 1.08999 * 117.49902 * 0.02562 * 20 11 10 40 40 H 1.09003 * 117.50139 * 145.02134 * 20 11 10 41 41 H 1.09005 * 117.49917 * 214.98095 * 21 11 10 42 42 H 1.08997 * 117.49833 * 359.97104 * 21 11 10 43 43 H 1.08993 * 109.46956 * 306.07108 * 24 22 6 44 44 H 1.09002 * 109.46618 * 186.07444 * 24 22 6 45 45 H 1.09002 * 109.47327 * 299.99564 * 25 24 22 46 46 H 1.09003 * 109.47627 * 59.99862 * 25 24 22 47 47 H 1.09002 * 109.46757 * 179.97438 * 25 24 22 48 48 H 1.09002 * 109.51372 * 172.22110 * 26 22 6 49 49 H 1.08991 * 109.51308 * 292.32564 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6072 1.9816 -0.8426 5 6 3.5684 1.4452 -0.1196 6 7 4.0463 2.8237 0.0708 7 6 4.8947 3.3916 -0.8092 8 8 5.2058 4.5606 -0.6861 9 7 5.3983 2.6637 -1.8255 10 6 6.4035 3.2477 -2.7171 11 6 6.7136 2.2657 -3.8486 12 6 7.1573 0.8926 -3.4143 13 1 6.8443 0.0224 -3.9720 14 6 7.9630 0.7474 -2.3049 15 7 8.1713 -0.4470 -1.7954 16 14 8.7587 2.2470 -1.5255 17 1 7.9174 2.7244 -0.3988 18 1 10.1065 1.8849 -1.0182 19 1 8.8847 3.3240 -2.5402 20 6 7.3282 2.8347 -5.1291 21 6 5.8710 2.3661 -5.1218 22 6 3.5702 3.5643 1.2499 23 1 3.8631 4.6111 1.1696 24 6 4.1731 2.9565 2.5180 25 6 5.6873 3.1757 2.5186 26 6 2.0419 3.4584 1.3027 27 8 1.6623 2.0824 1.2213 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9976 0.7987 0.6460 34 1 3.8600 1.0879 -1.1072 35 1 5.0953 1.7531 -1.9666 36 1 6.0198 4.1773 -3.1377 37 1 7.3139 3.4523 -2.1538 38 1 8.7379 -0.5491 -1.0146 39 1 7.5120 3.9084 -5.1651 40 1 8.0532 2.2156 -5.6575 41 1 5.6379 1.4389 -5.6455 42 1 5.0955 3.1313 -5.1531 43 1 3.9607 1.8878 2.5451 44 1 3.7362 3.4361 3.3939 45 1 6.1243 2.6961 1.6427 46 1 5.8998 4.2445 2.4915 47 1 6.1167 2.7431 3.4222 48 1 1.6798 3.8810 2.2400 49 1 1.6099 4.0062 0.4654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593400582.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:17 Heat of formation + Delta-G solvation = -59.862965 kcal Electronic energy + Delta-G solvation = -28255.186042 eV Core-core repulsion = 24603.847741 eV Total energy + Delta-G solvation = -3651.338301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.84664 -39.99237 -38.73049 -36.51053 -35.64871 -34.69297 -34.37344 -33.47890 -30.39783 -29.30786 -28.24978 -26.90781 -25.24579 -24.35670 -23.18002 -22.66936 -21.87722 -21.26308 -20.14485 -19.52128 -18.29374 -17.82545 -17.66637 -17.28450 -16.74410 -16.28463 -15.95672 -15.70288 -15.55960 -15.16546 -15.02220 -14.91171 -14.76447 -14.35805 -14.30053 -14.06745 -13.92172 -13.41944 -13.20293 -13.03870 -12.80681 -12.58182 -12.54993 -12.26464 -12.16672 -12.06075 -11.92250 -11.85514 -11.80973 -11.56411 -11.44986 -11.30111 -11.17472 -11.00354 -10.77892 -10.44334 -10.00743 -9.38949 -8.40674 -6.34511 1.23825 1.31646 1.33421 1.51190 2.07040 2.22910 2.72099 2.73196 2.97061 3.44798 3.60459 3.68998 3.84789 3.93907 3.96177 4.03661 4.13539 4.16470 4.28874 4.36425 4.41978 4.42883 4.45515 4.50789 4.56363 4.60143 4.68468 4.75048 4.77112 4.89129 4.90708 4.92365 4.93579 5.00896 5.08076 5.16819 5.19306 5.24255 5.27857 5.43486 5.48211 5.49032 5.56451 5.64290 5.88805 6.14879 6.26817 6.65174 6.93935 7.26822 7.49159 8.73588 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.013413 B = 0.005363 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.007641 B = 5220.137131 C = 5788.874510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C 0.089 3.911 4 H 0.063 0.937 5 C 0.079 3.921 6 N -0.625 5.625 7 C 0.702 3.298 8 O -0.635 6.635 9 N -0.721 5.721 10 C 0.165 3.835 11 C -0.040 4.040 12 C -0.475 4.475 13 H 0.053 0.947 14 C 0.053 3.947 15 N -0.922 5.922 16 Si 0.930 3.070 17 H -0.294 1.294 18 H -0.307 1.307 19 H -0.252 1.252 20 C -0.190 4.190 21 C -0.159 4.159 22 C 0.116 3.884 23 H 0.091 0.909 24 C -0.117 4.117 25 C -0.146 4.146 26 C 0.062 3.938 27 O -0.373 6.373 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.407 0.593 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.265 0.735 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.012 0.988 46 H 0.047 0.953 47 H 0.068 0.932 48 H 0.135 0.865 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.188 4.181 6.296 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C 0.030 3.970 4 H 0.081 0.919 5 C -0.044 4.044 6 N -0.362 5.362 7 C 0.404 3.596 8 O -0.518 6.518 9 N -0.377 5.377 10 C 0.041 3.959 11 C -0.041 4.041 12 C -0.513 4.513 13 H 0.072 0.928 14 C -0.147 4.147 15 N -0.561 5.561 16 Si 0.763 3.237 17 H -0.222 1.222 18 H -0.236 1.236 19 H -0.178 1.178 20 C -0.229 4.229 21 C -0.196 4.196 22 C 0.013 3.987 23 H 0.109 0.891 24 C -0.155 4.155 25 C -0.203 4.203 26 C -0.015 4.015 27 O -0.292 6.292 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.122 0.878 45 H 0.031 0.969 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.153 0.847 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.946 4.792 6.648 17.046 hybrid contribution 1.295 0.189 0.058 1.310 sum -13.651 4.982 6.706 16.004 Atomic orbital electron populations 1.21645 0.93983 1.02269 1.02034 1.21546 0.97652 0.92425 1.03647 1.22486 0.91118 0.95803 0.87569 0.91896 1.22478 0.96385 0.82618 1.02929 1.47341 1.48461 1.15283 1.25096 1.16023 0.79179 0.84397 0.80030 1.90797 1.66635 1.16673 1.77686 1.45189 1.44000 1.17840 1.30666 1.20999 0.89347 0.95324 0.90223 1.19469 1.03242 0.94528 0.86850 1.20385 1.29607 0.90388 1.10895 0.92839 1.25292 0.96190 0.96540 0.96719 1.69983 1.38939 1.23734 1.23399 0.86284 0.76827 0.81617 0.79014 1.22178 1.23608 1.17763 1.23138 0.96425 0.99984 1.03304 1.22854 0.93272 1.02288 1.01184 1.22020 0.95621 0.97117 0.83984 0.89071 1.21751 0.94517 1.02099 0.97158 1.21679 0.97354 1.00910 1.00377 1.23053 0.91096 0.83101 1.04264 1.87932 1.79208 1.23949 1.38069 0.92726 0.91558 0.92455 0.89526 0.90840 0.90885 0.89671 0.75380 0.91781 0.95105 0.92519 0.89179 0.89523 0.89392 0.88547 0.91364 0.87753 0.96864 0.93416 0.91334 0.84687 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.81 71.98 0.71 -1.57 16 2 C -0.11 -2.15 5.64 30.59 0.17 -1.98 16 3 C 0.09 1.99 2.78 30.69 0.09 2.08 16 4 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 5 C 0.08 2.23 5.45 86.36 0.47 2.70 16 6 N -0.62 -20.44 2.25 -811.39 -1.83 -22.27 16 7 C 0.70 28.84 8.04 179.05 1.44 30.28 16 8 O -0.64 -29.77 15.79 -4.00 -0.06 -29.83 16 9 N -0.72 -30.11 5.06 -478.53 -2.42 -32.53 16 10 C 0.17 7.27 4.36 86.38 0.38 7.65 16 11 C -0.04 -1.73 1.41 -52.93 -0.07 -1.81 16 12 C -0.48 -24.70 8.86 25.60 0.23 -24.47 16 13 H 0.05 3.03 8.06 -2.91 -0.02 3.00 16 14 C 0.05 2.91 5.42 84.65 0.46 3.37 16 15 N -0.92 -53.69 13.96 21.45 0.30 -53.39 16 16 Si 0.93 46.96 24.03 68.60 1.65 48.61 16 17 H -0.29 -15.57 7.11 99.48 0.71 -14.87 16 18 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 19 H -0.25 -12.14 6.38 99.48 0.63 -11.51 16 20 C -0.19 -7.28 9.96 30.62 0.30 -6.97 16 21 C -0.16 -5.74 9.93 30.62 0.30 -5.43 16 22 C 0.12 3.13 2.62 44.97 0.12 3.25 16 23 H 0.09 2.77 7.06 -2.39 -0.02 2.75 16 24 C -0.12 -2.86 5.34 30.60 0.16 -2.69 16 25 C -0.15 -4.44 9.81 71.98 0.71 -3.73 16 26 C 0.06 1.27 6.36 72.08 0.46 1.73 16 27 O -0.37 -8.24 9.65 -148.98 -1.44 -9.67 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.97 7.82 -2.39 -0.02 0.95 16 31 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.07 2.11 7.50 -2.39 -0.02 2.09 16 34 H 0.09 2.52 5.77 -2.39 -0.01 2.51 16 35 H 0.41 16.53 5.54 -92.70 -0.51 16.02 16 36 H 0.06 2.67 8.06 -2.38 -0.02 2.65 16 37 H 0.03 1.53 2.57 -2.39 -0.01 1.52 16 38 H 0.27 14.86 8.31 -92.70 -0.77 14.09 16 39 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 41 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 42 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.07 1.71 7.12 -2.39 -0.02 1.69 16 44 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.01 0.48 7.54 -2.39 -0.02 0.46 16 46 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 49 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -66.03 376.45 2.46 -63.57 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.34 Total: 33.14 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 5.92 Total: 2.40 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -3.95 Total: -108.20 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -1.50 Total: -39.51 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.65 Total: 48.61 kcal Total: -66.03 2.46 -63.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593400582.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.705 kcal (2) G-P(sol) polarization free energy of solvation -66.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds