Wall clock time and date at job start Tue Mar 31 2020 10:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.47071 * 2 1 4 4 H 1.09002 * 109.51354 * 54.99554 * 3 2 1 5 5 C 1.53287 * 109.51020 * 175.10150 * 3 2 1 6 6 N 1.47176 * 108.37547 * 172.17243 * 5 3 2 7 7 C 1.34772 * 120.94187 * 129.49700 * 6 5 3 8 8 O 1.21586 * 119.99851 * 175.00203 * 7 6 5 9 9 N 1.34772 * 120.00470 * 355.00472 * 7 6 5 10 10 C 1.46494 * 120.00623 * 184.62664 * 9 7 6 11 11 C 1.52997 * 109.47668 * 184.86848 * 10 9 7 12 12 C 1.50706 * 115.54782 * 305.48422 * 11 10 9 13 13 H 1.08001 * 119.99866 * 144.59650 * 12 11 10 14 14 C 1.37872 * 119.99976 * 324.60403 * 12 11 10 15 15 N 1.31516 * 120.00119 * 3.00756 * 14 12 11 16 16 Si 1.86800 * 120.00184 * 183.00638 * 14 12 11 17 17 H 1.48508 * 109.46845 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47431 * 119.99881 * 16 14 12 19 19 H 1.48504 * 109.47309 * 240.00444 * 16 14 12 20 20 C 1.52994 * 117.50347 * 159.81603 * 11 10 9 21 21 C 1.52991 * 117.50118 * 91.15286 * 11 10 9 22 22 C 1.47155 * 118.07342 * 309.54639 * 6 5 3 23 23 H 1.09001 * 109.67960 * 170.22268 * 22 6 5 24 24 C 1.52995 * 109.68307 * 290.77780 * 22 6 5 25 25 C 1.53004 * 109.47085 * 293.92448 * 24 22 6 26 26 C 1.53297 * 108.38432 * 50.50208 * 22 6 5 27 27 O 1.42960 * 109.22270 * 307.69359 * 26 22 6 28 28 H 1.09000 * 109.46662 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46840 * 299.99928 * 1 2 3 30 30 H 1.08998 * 109.46693 * 60.00315 * 1 2 3 31 31 H 1.08993 * 109.46783 * 239.99989 * 2 1 3 32 32 H 1.08998 * 109.46693 * 119.99685 * 2 1 3 33 33 H 1.08994 * 109.68641 * 291.94439 * 5 3 2 34 34 H 1.09005 * 109.68624 * 52.50814 * 5 3 2 35 35 H 0.97004 * 119.99491 * 4.62566 * 9 7 6 36 36 H 1.09004 * 109.46725 * 304.87141 * 10 9 7 37 37 H 1.09008 * 109.47194 * 64.86402 * 10 9 7 38 38 H 0.97000 * 119.99772 * 185.00164 * 15 14 12 39 39 H 1.09003 * 117.49798 * 359.97438 * 20 11 10 40 40 H 1.09004 * 117.50077 * 145.01830 * 20 11 10 41 41 H 1.08997 * 117.50181 * 214.98080 * 21 11 10 42 42 H 1.09006 * 117.50129 * 359.97438 * 21 11 10 43 43 H 1.08997 * 109.47140 * 53.92726 * 24 22 6 44 44 H 1.09001 * 109.46942 * 173.92976 * 24 22 6 45 45 H 1.08997 * 109.47359 * 300.00144 * 25 24 22 46 46 H 1.09001 * 109.46800 * 60.00441 * 25 24 22 47 47 H 1.09002 * 109.46863 * 180.02562 * 25 24 22 48 48 H 1.09000 * 109.51314 * 187.76953 * 26 22 6 49 49 H 1.08999 * 109.55548 * 67.64467 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9822 0.8416 5 6 3.5680 1.4453 0.1234 6 7 4.0464 2.8239 -0.0683 7 6 4.8934 3.3922 0.8126 8 8 5.3491 4.4975 0.5914 9 7 5.2353 2.7355 1.9387 10 6 6.0742 3.3925 2.9440 11 6 6.4123 2.3972 4.0557 12 6 5.2312 1.7280 4.7102 13 1 5.3044 0.7007 5.0354 14 6 4.0572 2.4272 4.8938 15 7 3.9480 3.6585 4.4449 16 14 2.6215 1.6255 5.7801 17 1 2.9962 0.2461 6.1827 18 1 2.2802 2.4188 6.9882 19 1 1.4464 1.5740 4.8735 20 6 7.6262 2.7052 4.9346 21 6 7.6943 1.5762 3.9031 22 6 3.5723 3.5637 -1.2487 23 1 3.8649 4.6105 -1.1678 24 6 4.1772 2.9552 -2.5154 25 6 5.6914 3.1745 -2.5136 26 6 2.0440 3.4576 -1.3040 27 8 1.6643 2.0818 -1.2224 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8572 1.0897 1.1123 34 1 3.9993 0.7984 -0.6406 35 1 4.9257 1.8276 2.0836 36 1 6.9950 3.7418 2.4766 37 1 5.5369 4.2413 3.3672 38 1 3.1502 4.1757 4.6368 39 1 8.1842 3.6167 4.7205 40 1 7.5707 2.4234 5.9861 41 1 7.6836 0.5523 4.2765 42 1 8.2967 1.7448 3.0105 43 1 3.9649 1.8864 -2.5422 44 1 3.7417 3.4343 -3.3923 45 1 5.9037 4.2433 -2.4868 46 1 6.1269 2.6954 -1.6367 47 1 6.1223 2.7414 -3.4163 48 1 1.6834 3.8798 -2.2420 49 1 1.6097 4.0054 -0.4676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593400587.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:29 Heat of formation + Delta-G solvation = -52.151645 kcal Electronic energy + Delta-G solvation = -28236.791408 eV Core-core repulsion = 24585.787495 eV Total energy + Delta-G solvation = -3651.003913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.28894 -38.27294 -36.73527 -35.17522 -34.14784 -33.08336 -32.31380 -31.91402 -29.26247 -27.63121 -25.87255 -25.11679 -24.08309 -23.16350 -21.53092 -21.24445 -20.44836 -19.30243 -18.57049 -17.79161 -16.62344 -16.17532 -15.78749 -15.45947 -14.86257 -14.82441 -14.59526 -14.14504 -13.90417 -13.77882 -13.61987 -13.30658 -13.17843 -12.93050 -12.55455 -12.34868 -11.92327 -11.77287 -11.77062 -11.39777 -11.34497 -11.17936 -11.14105 -10.99850 -10.83598 -10.79582 -10.74857 -10.53127 -10.27886 -10.25105 -9.85023 -9.70746 -9.23845 -8.97099 -8.87499 -8.32226 -8.19671 -7.63227 -6.02596 -4.23209 3.14699 3.17616 3.26770 3.29010 3.78632 4.03505 4.25217 4.59792 4.76317 4.85538 4.98163 5.05742 5.13670 5.14213 5.28273 5.34062 5.45768 5.47653 5.54210 5.61095 5.64623 5.69230 5.81611 5.87320 5.94749 5.97713 6.03316 6.05351 6.09141 6.16443 6.29851 6.30840 6.32733 6.50813 6.54693 6.62532 6.75296 6.83593 6.92118 7.09975 7.24122 7.25452 7.54298 7.63588 7.78380 7.97695 8.29844 8.73427 8.94374 9.39937 9.48593 10.85545 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.006022 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.276491 B = 4648.172216 C = 6202.776996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.078 3.922 4 H 0.065 0.935 5 C 0.085 3.915 6 N -0.632 5.632 7 C 0.707 3.293 8 O -0.606 6.606 9 N -0.700 5.700 10 C 0.183 3.817 11 C 0.035 3.965 12 C -0.495 4.495 13 H 0.061 0.939 14 C 0.074 3.926 15 N -0.864 5.864 16 Si 0.889 3.111 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.197 4.197 21 C -0.212 4.212 22 C 0.127 3.873 23 H 0.105 0.895 24 C -0.124 4.124 25 C -0.143 4.143 26 C 0.054 3.946 27 O -0.375 6.375 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.394 0.606 36 H 0.019 0.981 37 H 0.110 0.890 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.100 0.900 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.515 -4.723 -11.356 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.019 3.981 4 H 0.083 0.917 5 C -0.039 4.039 6 N -0.371 5.371 7 C 0.408 3.592 8 O -0.486 6.486 9 N -0.352 5.352 10 C 0.059 3.941 11 C 0.034 3.966 12 C -0.533 4.533 13 H 0.079 0.921 14 C -0.130 4.130 15 N -0.500 5.500 16 Si 0.716 3.284 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.236 4.236 21 C -0.249 4.249 22 C 0.022 3.978 23 H 0.123 0.877 24 C -0.163 4.163 25 C -0.201 4.201 26 C -0.024 4.024 27 O -0.294 6.294 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.230 0.770 36 H 0.037 0.963 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.118 0.882 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.413 -3.851 -11.650 13.039 hybrid contribution -0.682 -0.690 0.996 1.390 sum -5.095 -4.541 -10.655 12.653 Atomic orbital electron populations 1.21691 0.95212 1.01349 1.02250 1.21510 0.96817 0.93996 1.02931 1.22518 0.93590 0.94414 0.87532 0.91727 1.22236 0.94556 0.84378 1.02715 1.47243 1.49996 1.14277 1.25626 1.15819 0.79244 0.83981 0.80133 1.90814 1.59242 1.20465 1.78075 1.44984 1.54349 1.17919 1.17964 1.20942 0.90876 0.96862 0.85382 1.19260 0.87217 0.95372 0.94741 1.20551 0.94907 0.98381 1.39432 0.92102 1.24997 0.98113 0.95137 0.94749 1.69914 1.28340 1.09055 1.42734 0.86584 0.82375 0.79666 0.79734 1.19701 1.20849 1.20935 1.22931 1.06670 0.97839 0.96159 1.22940 1.05898 0.95753 1.00300 1.21649 0.93267 0.98155 0.84685 0.87729 1.21753 0.96299 1.01619 0.96623 1.21657 0.95514 1.01923 1.00990 1.22990 0.93789 0.83261 1.02339 1.87883 1.79773 1.23674 1.38038 0.92848 0.92897 0.92060 0.91042 0.90182 0.89046 0.91314 0.77035 0.96268 0.87292 0.92846 0.91455 0.90231 0.90706 0.91385 0.91569 0.91484 0.92646 0.92705 0.93493 0.88175 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.81 37.16 0.36 -1.23 16 2 C -0.11 -1.30 5.65 -26.73 -0.15 -1.45 16 3 C 0.08 1.07 2.78 -26.58 -0.07 1.00 16 4 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 5 C 0.09 1.25 5.52 -3.52 -0.02 1.23 16 6 N -0.63 -10.80 2.25 -170.42 -0.38 -11.19 16 7 C 0.71 15.08 8.04 -86.93 -0.70 14.38 16 8 O -0.61 -14.81 15.82 5.29 0.08 -14.73 16 9 N -0.70 -15.26 5.08 -65.23 -0.33 -15.59 16 10 C 0.18 4.37 4.62 -4.05 -0.02 4.36 16 11 C 0.03 0.82 2.06 -155.67 -0.32 0.50 16 12 C -0.50 -12.31 8.31 -34.44 -0.29 -12.59 16 13 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 14 C 0.07 1.85 5.31 -17.82 -0.09 1.76 16 15 N -0.86 -22.55 10.18 55.43 0.56 -21.98 16 16 Si 0.89 19.58 29.54 -169.99 -5.02 14.56 16 17 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.20 -4.30 9.96 -26.70 -0.27 -4.57 16 21 C -0.21 -4.41 9.92 -26.70 -0.26 -4.67 16 22 C 0.13 1.88 2.59 -67.42 -0.17 1.71 16 23 H 0.10 1.73 7.12 -51.93 -0.37 1.36 16 24 C -0.12 -1.57 5.34 -26.73 -0.14 -1.71 16 25 C -0.14 -1.96 9.81 37.16 0.36 -1.60 16 26 C 0.05 0.70 6.36 37.31 0.24 0.94 16 27 O -0.37 -5.10 9.66 -35.23 -0.34 -5.44 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.68 7.83 -51.93 -0.41 0.27 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.41 5.66 -51.93 -0.29 1.12 16 34 H 0.07 0.91 7.51 -51.93 -0.39 0.52 16 35 H 0.39 8.22 5.45 -40.82 -0.22 8.00 16 36 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 37 H 0.11 2.96 5.91 -51.92 -0.31 2.65 16 38 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 43 H 0.07 0.84 7.12 -51.93 -0.37 0.47 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.05 0.88 7.54 -51.93 -0.39 0.49 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -27.98 382.22 -9.85 -37.83 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -8.63 Total: 12.73 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.55 Total: -1.95 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.15 Total: -48.75 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.26 Total: -20.17 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -27.98 -9.85 -37.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593400587.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.324 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds