Wall clock time and date at job start Tue Mar 31 2020 10:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.47071 * 2 1 4 4 H 1.09002 * 109.51354 * 54.99554 * 3 2 1 5 5 C 1.53287 * 109.51020 * 175.10150 * 3 2 1 6 6 N 1.47176 * 108.37547 * 172.17243 * 5 3 2 7 7 C 1.34772 * 120.94187 * 129.49700 * 6 5 3 8 8 O 1.21586 * 119.99851 * 175.00203 * 7 6 5 9 9 N 1.34772 * 120.00470 * 355.00472 * 7 6 5 10 10 C 1.46494 * 120.00623 * 184.62664 * 9 7 6 11 11 C 1.52997 * 109.47668 * 184.86848 * 10 9 7 12 12 C 1.50706 * 115.54782 * 305.48422 * 11 10 9 13 13 H 1.08001 * 119.99866 * 144.59650 * 12 11 10 14 14 C 1.37872 * 119.99976 * 324.60403 * 12 11 10 15 15 N 1.31516 * 120.00119 * 3.00756 * 14 12 11 16 16 Si 1.86800 * 120.00184 * 183.00638 * 14 12 11 17 17 H 1.48508 * 109.46845 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47431 * 119.99881 * 16 14 12 19 19 H 1.48504 * 109.47309 * 240.00444 * 16 14 12 20 20 C 1.52994 * 117.50347 * 159.81603 * 11 10 9 21 21 C 1.52991 * 117.50118 * 91.15286 * 11 10 9 22 22 C 1.47155 * 118.07342 * 309.54639 * 6 5 3 23 23 H 1.09001 * 109.67960 * 170.22268 * 22 6 5 24 24 C 1.52995 * 109.68307 * 290.77780 * 22 6 5 25 25 C 1.53004 * 109.47085 * 293.92448 * 24 22 6 26 26 C 1.53297 * 108.38432 * 50.50208 * 22 6 5 27 27 O 1.42960 * 109.22270 * 307.69359 * 26 22 6 28 28 H 1.09000 * 109.46662 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46840 * 299.99928 * 1 2 3 30 30 H 1.08998 * 109.46693 * 60.00315 * 1 2 3 31 31 H 1.08993 * 109.46783 * 239.99989 * 2 1 3 32 32 H 1.08998 * 109.46693 * 119.99685 * 2 1 3 33 33 H 1.08994 * 109.68641 * 291.94439 * 5 3 2 34 34 H 1.09005 * 109.68624 * 52.50814 * 5 3 2 35 35 H 0.97004 * 119.99491 * 4.62566 * 9 7 6 36 36 H 1.09004 * 109.46725 * 304.87141 * 10 9 7 37 37 H 1.09008 * 109.47194 * 64.86402 * 10 9 7 38 38 H 0.97000 * 119.99772 * 185.00164 * 15 14 12 39 39 H 1.09003 * 117.49798 * 359.97438 * 20 11 10 40 40 H 1.09004 * 117.50077 * 145.01830 * 20 11 10 41 41 H 1.08997 * 117.50181 * 214.98080 * 21 11 10 42 42 H 1.09006 * 117.50129 * 359.97438 * 21 11 10 43 43 H 1.08997 * 109.47140 * 53.92726 * 24 22 6 44 44 H 1.09001 * 109.46942 * 173.92976 * 24 22 6 45 45 H 1.08997 * 109.47359 * 300.00144 * 25 24 22 46 46 H 1.09001 * 109.46800 * 60.00441 * 25 24 22 47 47 H 1.09002 * 109.46863 * 180.02562 * 25 24 22 48 48 H 1.09000 * 109.51314 * 187.76953 * 26 22 6 49 49 H 1.08999 * 109.55548 * 67.64467 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9822 0.8416 5 6 3.5680 1.4453 0.1234 6 7 4.0464 2.8239 -0.0683 7 6 4.8934 3.3922 0.8126 8 8 5.3491 4.4975 0.5914 9 7 5.2353 2.7355 1.9387 10 6 6.0742 3.3925 2.9440 11 6 6.4123 2.3972 4.0557 12 6 5.2312 1.7280 4.7102 13 1 5.3044 0.7007 5.0354 14 6 4.0572 2.4272 4.8938 15 7 3.9480 3.6585 4.4449 16 14 2.6215 1.6255 5.7801 17 1 2.9962 0.2461 6.1827 18 1 2.2802 2.4188 6.9882 19 1 1.4464 1.5740 4.8735 20 6 7.6262 2.7052 4.9346 21 6 7.6943 1.5762 3.9031 22 6 3.5723 3.5637 -1.2487 23 1 3.8649 4.6105 -1.1678 24 6 4.1772 2.9552 -2.5154 25 6 5.6914 3.1745 -2.5136 26 6 2.0440 3.4576 -1.3040 27 8 1.6643 2.0818 -1.2224 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8572 1.0897 1.1123 34 1 3.9993 0.7984 -0.6406 35 1 4.9257 1.8276 2.0836 36 1 6.9950 3.7418 2.4766 37 1 5.5369 4.2413 3.3672 38 1 3.1502 4.1757 4.6368 39 1 8.1842 3.6167 4.7205 40 1 7.5707 2.4234 5.9861 41 1 7.6836 0.5523 4.2765 42 1 8.2967 1.7448 3.0105 43 1 3.9649 1.8864 -2.5422 44 1 3.7417 3.4343 -3.3923 45 1 5.9037 4.2433 -2.4868 46 1 6.1269 2.6954 -1.6367 47 1 6.1223 2.7414 -3.4163 48 1 1.6834 3.8798 -2.2420 49 1 1.6097 4.0054 -0.4676 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593400587.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:28 Heat of formation + Delta-G solvation = -66.822153 kcal Electronic energy + Delta-G solvation = -28237.427569 eV Core-core repulsion = 24585.787495 eV Total energy + Delta-G solvation = -3651.640074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65967 -39.76221 -38.46904 -36.39941 -35.49932 -34.54768 -34.12477 -33.27485 -30.34537 -28.94940 -27.71341 -26.88066 -25.20916 -24.26979 -23.00312 -22.60451 -21.75715 -21.14840 -19.99746 -19.33654 -18.04723 -17.73295 -17.15288 -16.86979 -16.58305 -16.15182 -15.93541 -15.57118 -15.40302 -15.17194 -14.87520 -14.58171 -14.50020 -14.22157 -14.14116 -13.64500 -13.38921 -13.27930 -13.05541 -12.96102 -12.78590 -12.59127 -12.46700 -12.28154 -12.20607 -12.04974 -11.96520 -11.90947 -11.80444 -11.52954 -11.39642 -11.12458 -10.93279 -10.82907 -10.68633 -10.17101 -9.80529 -9.21278 -7.93967 -6.20153 1.39293 1.45830 1.54241 1.73026 2.35968 2.41334 2.71956 2.96452 3.24508 3.62256 3.66256 3.75360 3.92223 3.99223 4.08019 4.20762 4.25792 4.34826 4.43095 4.46444 4.52788 4.53569 4.59667 4.64617 4.71651 4.76417 4.79612 4.81710 4.94987 4.95958 5.02619 5.04353 5.10809 5.12176 5.17820 5.24214 5.27487 5.40689 5.43860 5.52365 5.59825 5.63148 5.94199 5.98025 6.10659 6.13873 6.38138 6.81529 7.25566 7.44907 7.79477 8.91862 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.006022 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.276491 B = 4648.172216 C = 6202.776996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.082 3.918 4 H 0.038 0.962 5 C 0.084 3.916 6 N -0.628 5.628 7 C 0.701 3.299 8 O -0.644 6.644 9 N -0.698 5.698 10 C 0.197 3.803 11 C 0.007 3.993 12 C -0.500 4.500 13 H 0.059 0.941 14 C 0.037 3.963 15 N -0.888 5.888 16 Si 0.945 3.055 17 H -0.265 1.265 18 H -0.289 1.289 19 H -0.282 1.282 20 C -0.197 4.197 21 C -0.187 4.187 22 C 0.120 3.880 23 H 0.082 0.918 24 C -0.114 4.114 25 C -0.139 4.139 26 C 0.058 3.942 27 O -0.370 6.370 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.398 0.602 36 H 0.009 0.991 37 H 0.074 0.926 38 H 0.255 0.745 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.040 0.960 46 H 0.024 0.976 47 H 0.070 0.930 48 H 0.136 0.864 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 -6.822 -12.792 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C 0.024 3.976 4 H 0.057 0.943 5 C -0.039 4.039 6 N -0.366 5.366 7 C 0.403 3.597 8 O -0.527 6.527 9 N -0.351 5.351 10 C 0.072 3.928 11 C 0.006 3.994 12 C -0.538 4.538 13 H 0.078 0.922 14 C -0.164 4.164 15 N -0.525 5.525 16 Si 0.771 3.229 17 H -0.189 1.189 18 H -0.216 1.216 19 H -0.208 1.208 20 C -0.236 4.236 21 C -0.224 4.224 22 C 0.016 3.984 23 H 0.100 0.900 24 C -0.152 4.152 25 C -0.197 4.197 26 C -0.019 4.019 27 O -0.288 6.288 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.235 0.765 36 H 0.028 0.972 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.115 0.885 45 H 0.059 0.941 46 H 0.044 0.956 47 H 0.089 0.911 48 H 0.154 0.846 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.215 -5.994 -13.108 15.328 hybrid contribution -0.404 -0.011 1.419 1.476 sum -5.620 -6.005 -11.689 14.292 Atomic orbital electron populations 1.21671 0.94678 1.02341 1.01559 1.21533 0.97225 0.92136 1.03986 1.22488 0.92514 0.95779 0.86864 0.94345 1.22413 0.95468 0.83116 1.02910 1.47287 1.48602 1.15310 1.25355 1.16004 0.79623 0.83590 0.80483 1.90773 1.60824 1.22171 1.78963 1.44844 1.54396 1.17995 1.17869 1.20575 0.90116 0.96237 0.85830 1.19304 0.88003 0.96663 0.95402 1.20704 0.95520 0.98276 1.39289 0.92231 1.25568 1.00094 0.95405 0.95363 1.70097 1.28492 1.10171 1.43778 0.85707 0.79821 0.78995 0.78338 1.18869 1.21551 1.20755 1.22955 1.05568 0.98744 0.96321 1.22921 1.03477 0.95838 1.00154 1.21889 0.94693 0.96970 0.84802 0.90029 1.21710 0.95282 1.02030 0.96195 1.21613 0.96488 1.00816 1.00748 1.23052 0.92211 0.83122 1.03529 1.87899 1.79577 1.23707 1.37628 0.91022 0.94050 0.92291 0.89418 0.89662 0.90094 0.89065 0.76550 0.97234 0.90794 0.93522 0.90810 0.90172 0.89594 0.90244 0.90875 0.88515 0.94059 0.95635 0.91066 0.84632 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.81 71.99 0.71 -2.10 16 2 C -0.11 -2.26 5.65 30.60 0.17 -2.09 16 3 C 0.08 2.16 2.78 30.69 0.09 2.25 16 4 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 5 C 0.08 2.40 5.52 86.35 0.48 2.87 16 6 N -0.63 -21.57 2.25 -811.35 -1.83 -23.40 16 7 C 0.70 30.92 8.04 179.06 1.44 32.36 16 8 O -0.64 -32.93 15.82 -3.99 -0.06 -32.99 16 9 N -0.70 -31.30 5.08 -478.55 -2.43 -33.73 16 10 C 0.20 9.72 4.62 86.38 0.40 10.12 16 11 C 0.01 0.33 2.06 -52.93 -0.11 0.22 16 12 C -0.50 -24.80 8.31 25.60 0.21 -24.59 16 13 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 14 C 0.04 1.87 5.31 84.65 0.45 2.32 16 15 N -0.89 -47.60 10.18 21.45 0.22 -47.38 16 16 Si 0.94 40.26 29.54 68.60 2.03 42.29 16 17 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 18 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 20 C -0.20 -8.49 9.96 30.61 0.30 -8.18 16 21 C -0.19 -7.53 9.92 30.61 0.30 -7.23 16 22 C 0.12 3.49 2.59 44.96 0.12 3.60 16 23 H 0.08 2.77 7.12 -2.39 -0.02 2.75 16 24 C -0.11 -2.62 5.34 30.59 0.16 -2.45 16 25 C -0.14 -3.67 9.81 71.98 0.71 -2.96 16 26 C 0.06 1.44 6.36 72.08 0.46 1.89 16 27 O -0.37 -9.25 9.66 -148.98 -1.44 -10.68 16 28 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 1.16 7.83 -2.39 -0.02 1.15 16 31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.08 2.48 5.66 -2.39 -0.01 2.47 16 34 H 0.09 2.22 7.51 -2.38 -0.02 2.20 16 35 H 0.40 16.89 5.45 -92.71 -0.50 16.38 16 36 H 0.01 0.48 8.05 -2.38 -0.02 0.46 16 37 H 0.07 4.21 5.91 -2.38 -0.01 4.20 16 38 H 0.25 13.48 8.32 -92.71 -0.77 12.71 16 39 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 41 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 42 H 0.08 3.02 8.14 -2.38 -0.02 3.00 16 43 H 0.07 1.62 7.12 -2.39 -0.02 1.60 16 44 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.02 0.80 7.54 -2.39 -0.02 0.78 16 47 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -61.47 382.22 2.79 -58.69 By element: Atomic # 1 Polarization: 40.75 SS G_CDS: 0.41 Total: 41.17 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.89 Total: 6.04 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -4.04 Total: -104.50 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.50 Total: -43.68 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -61.47 2.79 -58.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593400587.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.136 kcal (2) G-P(sol) polarization free energy of solvation -61.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds