Wall clock time and date at job start Tue Mar 31 2020 09:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47333 * 2 1 4 4 C 1.52998 * 109.47309 * 239.99900 * 2 1 3 5 5 O 1.42903 * 109.46914 * 59.99831 * 4 2 1 6 6 C 1.53004 * 109.47332 * 119.99803 * 2 1 3 7 7 H 1.09004 * 109.46559 * 59.99736 * 6 2 1 8 8 N 1.46497 * 109.47192 * 300.00045 * 6 2 1 9 9 C 1.34780 * 119.99719 * 154.99545 * 8 6 2 10 10 O 1.21578 * 120.00108 * 359.97438 * 9 8 6 11 11 N 1.34782 * 119.99559 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99602 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46602 * 184.79227 * 12 11 9 14 14 C 1.50694 * 115.55031 * 294.81113 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20931 * 14 13 12 16 16 C 1.37882 * 120.00284 * 274.93190 * 14 13 12 17 17 N 1.31509 * 119.99919 * 355.42076 * 16 14 13 18 18 Si 1.86800 * 120.00242 * 175.41794 * 16 14 13 19 19 H 1.48502 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47091 * 119.99801 * 18 16 14 21 21 H 1.48497 * 109.47138 * 240.00628 * 18 16 14 22 22 C 1.53003 * 117.49932 * 80.48439 * 13 12 11 23 23 C 1.52998 * 117.49502 * 149.14583 * 13 12 11 24 24 C 1.52993 * 109.47139 * 179.97438 * 6 2 1 25 25 C 1.53000 * 117.50105 * 248.74728 * 24 6 2 26 26 C 1.53008 * 117.49853 * 180.09069 * 24 6 2 27 27 H 1.09006 * 109.46858 * 299.99830 * 1 2 3 28 28 H 1.08994 * 109.47209 * 59.99833 * 1 2 3 29 29 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47217 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47464 * 300.00101 * 3 2 1 32 32 H 1.09005 * 109.47513 * 60.00115 * 3 2 1 33 33 H 1.08993 * 109.47743 * 179.97438 * 4 2 1 34 34 H 1.09004 * 109.47015 * 300.00528 * 4 2 1 35 35 H 0.96698 * 113.99881 * 179.97438 * 5 4 2 36 36 H 0.96996 * 119.99936 * 334.99831 * 8 6 2 37 37 H 0.97004 * 119.99767 * 359.97438 * 11 9 8 38 38 H 1.08993 * 109.47604 * 64.79661 * 12 11 9 39 39 H 1.09000 * 109.47101 * 304.78675 * 12 11 9 40 40 H 0.97004 * 120.00506 * 184.99920 * 17 16 14 41 41 H 1.08997 * 117.49622 * 214.99831 * 22 13 12 42 42 H 1.09000 * 117.49928 * 0.02562 * 22 13 12 43 43 H 1.08996 * 117.50254 * 359.97148 * 23 13 12 44 44 H 1.09005 * 117.49689 * 144.97447 * 23 13 12 45 45 H 1.09001 * 115.55236 * 34.42078 * 24 6 2 46 46 H 1.08998 * 117.50057 * 0.02562 * 25 24 6 47 47 H 1.09005 * 117.50161 * 145.02344 * 25 24 6 48 48 H 1.09005 * 117.49682 * 214.98378 * 26 24 6 49 49 H 1.08998 * 117.49723 * 359.97084 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5636 -0.0476 -2.4160 6 6 2.0400 -0.7212 1.2493 7 1 1.6766 -1.7489 1.2493 8 7 1.5517 -0.0306 2.4454 9 6 1.4230 -0.7030 3.6064 10 8 1.7117 -1.8828 3.6608 11 7 0.9732 -0.0677 4.7067 12 6 0.8339 -0.7985 5.9688 13 6 0.1972 0.1143 7.0189 14 6 1.0212 1.3078 7.4280 15 1 0.8612 2.2636 6.9511 16 6 1.9756 1.1811 8.4150 17 7 2.1055 0.0436 9.0619 18 14 3.0842 2.6253 8.8334 19 1 2.7382 3.7817 7.9683 20 1 2.8938 2.9990 10.2579 21 1 4.5012 2.2435 8.6067 22 6 -1.3226 0.2856 6.9779 23 6 -0.6750 -0.5428 8.0905 24 6 3.5699 -0.7217 1.2489 25 6 4.2759 -2.0634 1.0426 26 6 4.2765 -1.4022 2.4232 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2492 35 1 1.8493 -0.4509 -3.2471 36 1 1.3210 0.9105 2.4019 37 1 0.7426 0.8735 4.6631 38 1 1.8169 -1.1187 6.3138 39 1 0.2004 -1.6721 5.8148 40 1 2.7260 -0.0241 9.8045 41 1 -1.7264 1.2616 7.2469 42 1 -1.8690 -0.2523 6.2032 43 1 -0.7957 -1.6252 8.0471 44 1 -0.6526 -0.1119 9.0915 45 1 4.0403 0.1650 0.8240 46 1 3.6504 -2.9456 0.9067 47 1 5.2109 -2.0592 0.4823 48 1 5.2118 -0.9633 2.7706 49 1 3.6512 -1.8491 3.1961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596586557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:04 Heat of formation + Delta-G solvation = -39.729812 kcal Electronic energy + Delta-G solvation = -27177.939059 eV Core-core repulsion = 23527.473798 eV Total energy + Delta-G solvation = -3650.465262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.29107 -38.48732 -36.93754 -36.42738 -35.07440 -33.25801 -32.51599 -31.92992 -27.52160 -27.27489 -26.47359 -25.56448 -24.55960 -22.13427 -21.22359 -20.97026 -20.16602 -19.37286 -19.03457 -17.85403 -17.45242 -16.27732 -15.96169 -15.44932 -15.16856 -14.86618 -14.65245 -14.52851 -14.10847 -13.96928 -13.70618 -13.18251 -13.13570 -12.76395 -12.60755 -12.50599 -12.17989 -11.92844 -11.72503 -11.54791 -11.22282 -11.09465 -11.00143 -10.95571 -10.91666 -10.66566 -10.51284 -10.22266 -10.22036 -10.08800 -9.92947 -9.65353 -9.42181 -9.01148 -8.70105 -8.47467 -8.21915 -7.96678 -6.06443 -4.15869 3.10887 3.25036 3.34322 3.35855 3.75681 3.98910 4.13801 4.35762 4.46286 4.64041 4.83927 4.89620 4.98330 5.15479 5.19898 5.21744 5.27240 5.32465 5.38428 5.41865 5.49174 5.63360 5.74883 5.77975 5.88296 5.90396 5.97317 6.05226 6.13280 6.20913 6.24839 6.30349 6.36723 6.49859 6.60137 6.64338 6.72883 6.84547 6.89218 7.13720 7.35924 7.39520 7.43665 7.48352 7.65064 7.82284 8.35639 8.68774 8.85537 9.23375 9.51141 11.00709 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.003560 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.727976 B = 7863.575931 C = 8235.486353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.140 4.140 4 C 0.090 3.910 5 O -0.570 6.570 6 C 0.209 3.791 7 H 0.087 0.913 8 N -0.742 5.742 9 C 0.701 3.299 10 O -0.601 6.601 11 N -0.721 5.721 12 C 0.183 3.817 13 C 0.025 3.975 14 C -0.498 4.498 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.211 4.211 23 C -0.142 4.142 24 C -0.176 4.176 25 C -0.177 4.177 26 C -0.176 4.176 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.377 0.623 36 H 0.392 0.608 37 H 0.396 0.604 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.260 0.740 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.400 -0.191 -19.634 19.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 C -0.197 4.197 4 C 0.012 3.988 5 O -0.375 6.375 6 C 0.103 3.897 7 H 0.105 0.895 8 N -0.398 5.398 9 C 0.402 3.598 10 O -0.482 6.482 11 N -0.373 5.373 12 C 0.060 3.940 13 C 0.024 3.976 14 C -0.535 4.535 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.510 5.510 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.248 4.248 23 C -0.180 4.180 24 C -0.195 4.195 25 C -0.214 4.214 26 C -0.213 4.213 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.223 0.777 36 H 0.227 0.773 37 H 0.229 0.771 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.121 0.879 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.522 -1.009 -18.958 18.992 hybrid contribution 0.850 1.250 0.005 1.511 sum 1.372 0.241 -18.953 19.004 Atomic orbital electron populations 1.21771 0.93441 1.02019 1.02135 1.20731 0.96780 0.96396 0.92725 1.21856 1.01084 0.94770 1.02034 1.22098 0.97563 0.94391 0.84761 1.86446 1.77628 1.57454 1.15983 1.20105 0.90325 0.96647 0.82644 0.89511 1.45128 1.72406 1.13480 1.08828 1.15995 0.78399 0.85150 0.80287 1.90785 1.57827 1.14733 1.84848 1.45164 1.69064 1.13998 1.09041 1.20829 1.00452 0.92243 0.80503 1.19056 0.87050 0.96714 0.94777 1.20374 1.17929 0.93994 1.21247 0.92260 1.24977 0.96626 0.95472 0.95974 1.69997 1.36295 1.24307 1.20412 0.86590 0.80859 0.82696 0.78143 1.19772 1.21076 1.20988 1.23008 0.98707 1.00747 1.02362 1.22462 1.04661 0.95845 0.95055 1.22820 0.94862 0.96475 1.05336 1.22902 1.01706 0.95611 1.01206 1.23339 1.02208 1.03114 0.92652 0.92361 0.91785 0.92860 0.92311 0.91636 0.92681 0.92935 0.93601 0.77673 0.77299 0.77069 0.91777 0.94482 0.92966 0.90490 0.91764 0.91841 0.89560 0.87912 0.88994 0.89476 0.89833 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.17 37.15 0.30 -1.12 16 2 C -0.07 -0.66 0.42 -154.51 -0.07 -0.72 16 3 C -0.14 -1.34 7.91 37.16 0.29 -1.05 16 4 C 0.09 0.79 5.67 37.16 0.21 1.00 16 5 O -0.57 -4.75 12.31 -35.23 -0.43 -5.19 16 6 C 0.21 2.58 1.54 -67.93 -0.10 2.48 16 7 H 0.09 1.25 7.33 -51.93 -0.38 0.87 16 8 N -0.74 -10.34 4.29 -58.68 -0.25 -10.60 16 9 C 0.70 12.85 7.90 -86.91 -0.69 12.16 16 10 O -0.60 -12.89 13.37 5.30 0.07 -12.82 16 11 N -0.72 -13.81 5.48 -65.23 -0.36 -14.17 16 12 C 0.18 4.13 5.50 -4.04 -0.02 4.11 16 13 C 0.02 0.58 1.47 -155.66 -0.23 0.35 16 14 C -0.50 -12.71 8.59 -34.44 -0.30 -13.01 16 15 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 16 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 17 N -0.87 -24.15 12.65 55.43 0.70 -23.45 16 18 Si 0.89 20.55 29.54 -169.99 -5.02 15.52 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.21 -4.40 9.96 -26.69 -0.27 -4.66 16 23 C -0.14 -3.26 9.14 -26.69 -0.24 -3.50 16 24 C -0.18 -2.13 3.89 -90.62 -0.35 -2.48 16 25 C -0.18 -2.07 10.18 -26.69 -0.27 -2.34 16 26 C -0.18 -2.60 9.74 -26.69 -0.26 -2.86 16 27 H 0.06 0.62 7.45 -51.93 -0.39 0.24 16 28 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.55 6.15 -51.93 -0.32 0.23 16 31 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 32 H 0.05 0.52 6.51 -51.93 -0.34 0.18 16 33 H 0.05 0.43 7.21 -51.93 -0.37 0.06 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.38 1.53 9.12 45.56 0.42 1.95 16 36 H 0.39 4.74 6.66 -40.82 -0.27 4.46 16 37 H 0.40 7.01 8.34 -40.82 -0.34 6.67 16 38 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 41 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 45 H 0.10 1.15 6.08 -51.93 -0.32 0.83 16 46 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 47 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 49 H 0.13 2.34 5.02 -51.93 -0.26 2.08 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -29.78 385.27 -9.13 -38.92 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -7.56 Total: 15.79 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.09 Total: -9.82 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.09 Total: -48.21 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.36 Total: -18.01 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.78 -9.13 -38.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596586557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.812 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds