Wall clock time and date at job start Tue Mar 31 2020 09:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47333 * 2 1 4 4 C 1.52998 * 109.47309 * 239.99900 * 2 1 3 5 5 O 1.42903 * 109.46914 * 59.99831 * 4 2 1 6 6 C 1.53004 * 109.47332 * 119.99803 * 2 1 3 7 7 H 1.09004 * 109.46559 * 59.99736 * 6 2 1 8 8 N 1.46497 * 109.47192 * 300.00045 * 6 2 1 9 9 C 1.34780 * 119.99719 * 154.99545 * 8 6 2 10 10 O 1.21578 * 120.00108 * 359.97438 * 9 8 6 11 11 N 1.34782 * 119.99559 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99602 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46602 * 184.79227 * 12 11 9 14 14 C 1.50694 * 115.55031 * 294.81113 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20931 * 14 13 12 16 16 C 1.37882 * 120.00284 * 274.93190 * 14 13 12 17 17 N 1.31509 * 119.99919 * 355.42076 * 16 14 13 18 18 Si 1.86800 * 120.00242 * 175.41794 * 16 14 13 19 19 H 1.48502 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47091 * 119.99801 * 18 16 14 21 21 H 1.48497 * 109.47138 * 240.00628 * 18 16 14 22 22 C 1.53003 * 117.49932 * 80.48439 * 13 12 11 23 23 C 1.52998 * 117.49502 * 149.14583 * 13 12 11 24 24 C 1.52993 * 109.47139 * 179.97438 * 6 2 1 25 25 C 1.53000 * 117.50105 * 248.74728 * 24 6 2 26 26 C 1.53008 * 117.49853 * 180.09069 * 24 6 2 27 27 H 1.09006 * 109.46858 * 299.99830 * 1 2 3 28 28 H 1.08994 * 109.47209 * 59.99833 * 1 2 3 29 29 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47217 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47464 * 300.00101 * 3 2 1 32 32 H 1.09005 * 109.47513 * 60.00115 * 3 2 1 33 33 H 1.08993 * 109.47743 * 179.97438 * 4 2 1 34 34 H 1.09004 * 109.47015 * 300.00528 * 4 2 1 35 35 H 0.96698 * 113.99881 * 179.97438 * 5 4 2 36 36 H 0.96996 * 119.99936 * 334.99831 * 8 6 2 37 37 H 0.97004 * 119.99767 * 359.97438 * 11 9 8 38 38 H 1.08993 * 109.47604 * 64.79661 * 12 11 9 39 39 H 1.09000 * 109.47101 * 304.78675 * 12 11 9 40 40 H 0.97004 * 120.00506 * 184.99920 * 17 16 14 41 41 H 1.08997 * 117.49622 * 214.99831 * 22 13 12 42 42 H 1.09000 * 117.49928 * 0.02562 * 22 13 12 43 43 H 1.08996 * 117.50254 * 359.97148 * 23 13 12 44 44 H 1.09005 * 117.49689 * 144.97447 * 23 13 12 45 45 H 1.09001 * 115.55236 * 34.42078 * 24 6 2 46 46 H 1.08998 * 117.50057 * 0.02562 * 25 24 6 47 47 H 1.09005 * 117.50161 * 145.02344 * 25 24 6 48 48 H 1.09005 * 117.49682 * 214.98378 * 26 24 6 49 49 H 1.08998 * 117.49723 * 359.97084 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5636 -0.0476 -2.4160 6 6 2.0400 -0.7212 1.2493 7 1 1.6766 -1.7489 1.2493 8 7 1.5517 -0.0306 2.4454 9 6 1.4230 -0.7030 3.6064 10 8 1.7117 -1.8828 3.6608 11 7 0.9732 -0.0677 4.7067 12 6 0.8339 -0.7985 5.9688 13 6 0.1972 0.1143 7.0189 14 6 1.0212 1.3078 7.4280 15 1 0.8612 2.2636 6.9511 16 6 1.9756 1.1811 8.4150 17 7 2.1055 0.0436 9.0619 18 14 3.0842 2.6253 8.8334 19 1 2.7382 3.7817 7.9683 20 1 2.8938 2.9990 10.2579 21 1 4.5012 2.2435 8.6067 22 6 -1.3226 0.2856 6.9779 23 6 -0.6750 -0.5428 8.0905 24 6 3.5699 -0.7217 1.2489 25 6 4.2759 -2.0634 1.0426 26 6 4.2765 -1.4022 2.4232 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 3.1299 -0.7209 -1.2495 34 1 1.6766 -1.7489 -1.2492 35 1 1.8493 -0.4509 -3.2471 36 1 1.3210 0.9105 2.4019 37 1 0.7426 0.8735 4.6631 38 1 1.8169 -1.1187 6.3138 39 1 0.2004 -1.6721 5.8148 40 1 2.7260 -0.0241 9.8045 41 1 -1.7264 1.2616 7.2469 42 1 -1.8690 -0.2523 6.2032 43 1 -0.7957 -1.6252 8.0471 44 1 -0.6526 -0.1119 9.0915 45 1 4.0403 0.1650 0.8240 46 1 3.6504 -2.9456 0.9067 47 1 5.2109 -2.0592 0.4823 48 1 5.2118 -0.9633 2.7706 49 1 3.6512 -1.8491 3.1961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596586557.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:03 Heat of formation + Delta-G solvation = -59.712237 kcal Electronic energy + Delta-G solvation = -27178.805562 eV Core-core repulsion = 23527.473798 eV Total energy + Delta-G solvation = -3651.331765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49992 -39.72427 -38.42883 -37.53791 -36.00304 -34.86544 -33.97851 -33.65354 -28.59963 -28.26688 -27.75297 -27.15260 -25.93109 -23.18421 -22.94296 -22.15146 -21.49897 -21.20472 -20.05631 -19.07319 -18.37722 -17.90943 -17.31729 -16.78535 -16.52473 -16.18949 -15.82556 -15.73647 -15.46354 -15.35788 -14.91685 -14.68444 -14.37368 -14.09143 -13.68740 -13.50664 -13.44055 -13.34665 -12.98799 -12.90748 -12.85917 -12.70036 -12.36308 -12.30599 -12.01390 -11.96807 -11.83594 -11.43359 -11.40337 -11.27625 -11.05959 -10.94704 -10.91694 -10.73698 -10.42848 -10.10197 -9.98655 -9.55652 -8.07780 -6.21496 1.41018 1.45035 1.53722 1.80285 2.30724 2.43058 2.93246 3.20458 3.25911 3.47606 3.58162 3.71259 3.81154 4.07109 4.13619 4.18950 4.21105 4.26848 4.31776 4.52245 4.58099 4.62042 4.68167 4.68537 4.76820 4.81180 4.82845 4.89844 5.00590 5.03901 5.05748 5.06878 5.08963 5.17497 5.27509 5.30509 5.39571 5.42248 5.50401 5.58311 5.65925 5.66350 5.77444 5.81699 6.20188 6.39020 6.85915 6.99375 7.28466 7.47965 7.76588 8.99320 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016775 B = 0.003560 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.727976 B = 7863.575931 C = 8235.486353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.059 4.059 3 C -0.138 4.138 4 C 0.093 3.907 5 O -0.582 6.582 6 C 0.209 3.791 7 H 0.066 0.934 8 N -0.724 5.724 9 C 0.700 3.300 10 O -0.634 6.634 11 N -0.718 5.718 12 C 0.203 3.797 13 C 0.005 3.995 14 C -0.501 4.501 15 H 0.063 0.937 16 C 0.025 3.975 17 N -0.907 5.907 18 Si 0.948 3.052 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.290 1.290 22 C -0.177 4.177 23 C -0.154 4.154 24 C -0.162 4.162 25 C -0.154 4.154 26 C -0.208 4.208 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.396 0.604 36 H 0.404 0.596 37 H 0.405 0.595 38 H 0.021 0.979 39 H 0.033 0.967 40 H 0.258 0.742 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.123 0.877 46 H 0.089 0.911 47 H 0.114 0.886 48 H 0.084 0.916 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 1.361 -22.141 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.060 4.060 3 C -0.195 4.195 4 C 0.015 3.985 5 O -0.390 6.390 6 C 0.104 3.896 7 H 0.084 0.916 8 N -0.381 5.381 9 C 0.400 3.600 10 O -0.516 6.516 11 N -0.371 5.371 12 C 0.078 3.922 13 C 0.004 3.996 14 C -0.538 4.538 15 H 0.081 0.919 16 C -0.176 4.176 17 N -0.545 5.545 18 Si 0.775 3.225 19 H -0.185 1.185 20 H -0.210 1.210 21 H -0.217 1.217 22 C -0.214 4.214 23 C -0.192 4.192 24 C -0.182 4.182 25 C -0.192 4.192 26 C -0.245 4.245 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.246 0.754 36 H 0.241 0.759 37 H 0.240 0.760 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.140 0.860 46 H 0.107 0.893 47 H 0.132 0.868 48 H 0.103 0.897 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.515 0.584 -21.525 21.539 hybrid contribution 0.823 0.727 0.723 1.315 sum 1.338 1.312 -20.802 20.886 Atomic orbital electron populations 1.21745 0.93751 1.01557 1.02084 1.20662 0.96441 0.96735 0.92170 1.21842 1.01400 0.94082 1.02187 1.22000 0.98007 0.94110 0.84370 1.86391 1.77913 1.57868 1.16799 1.20204 0.90685 0.95850 0.82860 0.91588 1.44985 1.71263 1.13909 1.07894 1.16105 0.78037 0.84823 0.80996 1.90777 1.58962 1.16420 1.85462 1.44934 1.69621 1.14216 1.08341 1.20343 0.97822 0.92325 0.81712 1.19072 0.88563 0.96586 0.95362 1.20676 1.17803 0.94700 1.20670 0.91888 1.25683 0.98004 0.97607 0.96314 1.70119 1.37202 1.26109 1.21047 0.85657 0.78621 0.80315 0.77923 1.18496 1.21025 1.21668 1.22983 0.96655 1.00677 1.01107 1.22382 1.05990 0.96351 0.94470 1.22869 0.94421 0.97580 1.03286 1.22970 1.02550 0.95131 0.98523 1.23154 1.02311 1.05787 0.93279 0.92828 0.91362 0.93553 0.91746 0.91408 0.92614 0.91950 0.93494 0.75424 0.75857 0.76044 0.96044 0.94861 0.93302 0.89709 0.89558 0.91374 0.91698 0.85973 0.89290 0.86769 0.89701 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.17 71.98 0.59 -1.99 16 2 C -0.06 -1.06 0.42 -52.18 -0.02 -1.09 16 3 C -0.14 -2.26 7.91 71.98 0.57 -1.69 16 4 C 0.09 1.38 5.67 71.98 0.41 1.79 16 5 O -0.58 -7.97 12.31 -148.98 -1.83 -9.80 16 6 C 0.21 4.93 1.54 44.99 0.07 5.00 16 7 H 0.07 1.88 7.33 -2.38 -0.02 1.86 16 8 N -0.72 -19.61 4.29 -457.82 -1.96 -21.58 16 9 C 0.70 25.88 7.90 179.05 1.41 27.29 16 10 O -0.63 -28.06 13.37 -3.96 -0.05 -28.11 16 11 N -0.72 -27.60 5.48 -478.54 -2.62 -30.23 16 12 C 0.20 9.37 5.50 86.38 0.48 9.84 16 13 C 0.00 0.23 1.47 -52.93 -0.08 0.15 16 14 C -0.50 -25.50 8.59 25.60 0.22 -25.28 16 15 H 0.06 3.10 7.82 -2.91 -0.02 3.07 16 16 C 0.02 1.30 5.43 84.66 0.46 1.76 16 17 N -0.91 -51.38 12.65 21.45 0.27 -51.11 16 18 Si 0.95 42.34 29.54 68.60 2.03 44.37 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 C -0.18 -7.11 9.96 30.62 0.30 -6.81 16 23 C -0.15 -7.10 9.14 30.62 0.28 -6.82 16 24 C -0.16 -3.67 3.89 -10.79 -0.04 -3.71 16 25 C -0.15 -3.35 10.18 30.62 0.31 -3.04 16 26 C -0.21 -6.15 9.74 30.62 0.30 -5.85 16 27 H 0.05 1.06 7.45 -2.38 -0.02 1.04 16 28 H 0.07 1.27 7.68 -2.39 -0.02 1.25 16 29 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.99 6.15 -2.38 -0.01 0.97 16 31 H 0.07 1.12 7.68 -2.39 -0.02 1.10 16 32 H 0.05 0.89 6.51 -2.38 -0.02 0.88 16 33 H 0.06 0.81 7.21 -2.39 -0.02 0.79 16 34 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.40 2.00 9.12 -74.06 -0.68 1.32 16 36 H 0.40 9.11 6.66 -92.71 -0.62 8.49 16 37 H 0.40 13.98 8.34 -92.71 -0.77 13.21 16 38 H 0.02 1.15 8.14 -2.39 -0.02 1.14 16 39 H 0.03 1.54 8.09 -2.39 -0.02 1.52 16 40 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 41 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 42 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.06 3.25 8.14 -2.38 -0.02 3.23 16 45 H 0.12 2.34 6.08 -2.39 -0.01 2.32 16 46 H 0.09 2.00 8.05 -2.39 -0.02 1.98 16 47 H 0.11 1.89 8.14 -2.38 -0.02 1.87 16 48 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 49 H 0.09 3.33 5.02 -2.39 -0.01 3.32 16 Total: -1.00 -65.49 385.27 -0.02 -65.51 By element: Atomic # 1 Polarization: 42.48 SS G_CDS: -1.10 Total: 41.38 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 5.26 Total: -10.43 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -4.32 Total: -102.92 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -1.89 Total: -37.91 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -65.49 -0.02 -65.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596586557.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.795 kcal (2) G-P(sol) polarization free energy of solvation -65.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds