Wall clock time and date at job start Tue Mar 31 2020 09:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 C 1.52993 * 109.47337 * 239.99752 * 2 1 3 5 5 O 1.42900 * 109.47376 * 59.99860 * 4 2 1 6 6 C 1.53001 * 109.46656 * 119.99513 * 2 1 3 7 7 H 1.09004 * 109.46910 * 179.97438 * 6 2 1 8 8 N 1.46497 * 109.47407 * 300.00222 * 6 2 1 9 9 C 1.34780 * 119.99719 * 204.99860 * 8 6 2 10 10 O 1.21578 * 120.00108 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99704 * 179.97438 * 9 8 6 12 12 C 1.46498 * 119.99966 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46847 * 184.79711 * 12 11 9 14 14 C 1.50694 * 115.55031 * 294.81434 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20931 * 14 13 12 16 16 C 1.37882 * 120.00284 * 274.93190 * 14 13 12 17 17 N 1.31518 * 119.99808 * 355.41947 * 16 14 13 18 18 Si 1.86800 * 120.00242 * 175.41794 * 16 14 13 19 19 H 1.48502 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47254 * 120.00165 * 18 16 14 21 21 H 1.48497 * 109.47138 * 240.00628 * 18 16 14 22 22 C 1.53003 * 117.49932 * 80.48760 * 13 12 11 23 23 C 1.52998 * 117.49502 * 149.14904 * 13 12 11 24 24 C 1.53007 * 109.47016 * 60.00184 * 6 2 1 25 25 C 1.52994 * 117.49944 * 248.74457 * 24 6 2 26 26 C 1.53000 * 117.49882 * 180.08205 * 24 6 2 27 27 H 1.08996 * 109.47603 * 300.00513 * 1 2 3 28 28 H 1.09006 * 109.46588 * 60.00426 * 1 2 3 29 29 H 1.09003 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47069 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46789 * 299.99565 * 3 2 1 32 32 H 1.08997 * 109.47147 * 59.99845 * 3 2 1 33 33 H 1.09004 * 109.47410 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.47354 * 300.00280 * 4 2 1 35 35 H 0.96705 * 114.00279 * 179.97438 * 5 4 2 36 36 H 0.96996 * 119.99936 * 25.00146 * 8 6 2 37 37 H 0.97009 * 119.99753 * 0.02562 * 11 9 8 38 38 H 1.08993 * 109.47219 * 64.80231 * 12 11 9 39 39 H 1.09000 * 109.47241 * 304.79395 * 12 11 9 40 40 H 0.97001 * 119.99858 * 184.99726 * 17 16 14 41 41 H 1.08997 * 117.49622 * 214.99831 * 22 13 12 42 42 H 1.09000 * 117.49928 * 0.02562 * 22 13 12 43 43 H 1.08996 * 117.50254 * 359.97148 * 23 13 12 44 44 H 1.09005 * 117.49689 * 144.97447 * 23 13 12 45 45 H 1.09000 * 115.55039 * 34.41693 * 24 6 2 46 46 H 1.09000 * 117.49903 * 359.97438 * 25 24 6 47 47 H 1.09003 * 117.50018 * 145.02464 * 25 24 6 48 48 H 1.08998 * 117.49794 * 214.98220 * 26 24 6 49 49 H 1.08995 * 117.49653 * 359.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 1.5638 -0.0477 -2.4160 6 6 2.0399 -0.7212 1.2493 7 1 3.1300 -0.7216 1.2492 8 7 1.5516 -0.0305 2.4454 9 6 2.2283 -0.1333 3.6065 10 8 3.2438 -0.7996 3.6612 11 7 1.7793 0.5025 4.7067 12 6 2.5152 0.3912 5.9686 13 6 1.7362 1.1015 7.0775 14 6 1.5939 2.5933 6.9189 15 1 0.7076 3.0054 6.4594 16 6 2.5927 3.4325 7.3655 17 7 3.6271 2.9386 8.0102 18 14 2.4765 5.2708 7.0549 19 1 1.2240 5.5696 6.3151 20 1 2.4684 5.9926 8.3527 21 1 3.6443 5.7117 6.2505 22 6 0.5709 0.3449 7.7183 23 6 1.8712 0.5519 8.4990 24 6 1.5299 -2.1637 1.2494 25 6 0.4936 -2.5466 2.3078 26 6 1.9325 -3.0553 2.4258 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 -0.7217 -1.2489 34 1 1.6767 -1.7489 -1.2492 35 1 1.8495 -0.4511 -3.2472 36 1 0.7411 0.5007 2.4018 37 1 0.9688 1.0338 4.6631 38 1 3.4957 0.8546 5.8594 39 1 2.6370 -0.6607 6.2267 40 1 4.2931 3.5345 8.3876 41 1 -0.2986 0.9262 8.0251 42 1 0.3594 -0.6590 7.3501 43 1 2.5146 -0.3159 8.6441 44 1 1.8575 1.2695 9.3194 45 1 1.4447 -2.6323 0.2689 46 1 0.1754 -1.7709 3.0043 47 1 -0.2733 -3.2673 2.0238 48 1 2.1117 -4.1105 2.2193 49 1 2.5610 -2.6144 3.1994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596586558.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:08 Heat of formation + Delta-G solvation = -35.286857 kcal Electronic energy + Delta-G solvation = -27322.770853 eV Core-core repulsion = 23672.498253 eV Total energy + Delta-G solvation = -3650.272601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.44940 -38.46651 -36.99599 -36.38785 -34.92558 -33.29905 -32.46204 -31.93118 -27.53767 -27.35444 -26.50130 -25.56433 -24.60393 -22.14663 -21.24918 -20.96595 -20.09724 -19.37588 -18.93542 -17.87755 -17.52267 -16.30067 -16.02653 -15.60717 -15.28873 -14.72979 -14.59364 -14.40229 -14.07751 -13.89941 -13.59168 -13.50253 -13.10448 -12.77426 -12.60705 -12.48317 -12.07964 -11.82783 -11.71458 -11.56356 -11.28377 -11.19051 -11.05483 -11.00263 -10.93072 -10.66482 -10.51676 -10.23472 -10.19908 -10.06366 -9.78765 -9.63805 -9.43584 -9.01929 -8.72515 -8.48066 -8.23132 -7.98678 -6.06968 -4.16487 3.12657 3.24871 3.34254 3.35665 3.75477 3.95447 4.08478 4.35250 4.48771 4.63959 4.83243 4.86238 4.98485 5.12608 5.19190 5.20843 5.21525 5.35841 5.38944 5.45486 5.55791 5.67724 5.79793 5.83055 5.89590 5.95027 6.00455 6.04867 6.06372 6.26685 6.27028 6.29693 6.36038 6.48981 6.56458 6.63230 6.72217 6.83320 6.87203 7.13226 7.33861 7.38614 7.42939 7.46953 7.63342 7.81795 8.34988 8.66042 8.84965 9.20800 9.50640 11.00198 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.003850 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.561146 B = 7271.047310 C = 8386.495670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.066 4.066 3 C -0.137 4.137 4 C 0.087 3.913 5 O -0.569 6.569 6 C 0.208 3.792 7 H 0.090 0.910 8 N -0.743 5.743 9 C 0.700 3.300 10 O -0.598 6.598 11 N -0.721 5.721 12 C 0.183 3.817 13 C 0.025 3.975 14 C -0.498 4.498 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.211 4.211 23 C -0.142 4.142 24 C -0.174 4.174 25 C -0.172 4.172 26 C -0.184 4.184 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.377 0.623 36 H 0.393 0.607 37 H 0.396 0.604 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.261 0.739 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 -8.141 -16.930 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.066 4.066 3 C -0.195 4.195 4 C 0.009 3.991 5 O -0.373 6.373 6 C 0.102 3.898 7 H 0.108 0.892 8 N -0.400 5.400 9 C 0.400 3.600 10 O -0.478 6.478 11 N -0.373 5.373 12 C 0.060 3.940 13 C 0.024 3.976 14 C -0.536 4.536 15 H 0.077 0.923 16 C -0.131 4.131 17 N -0.510 5.510 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.248 4.248 23 C -0.180 4.180 24 C -0.193 4.193 25 C -0.210 4.210 26 C -0.221 4.221 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.223 0.777 36 H 0.228 0.772 37 H 0.229 0.771 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.122 0.878 46 H 0.113 0.887 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.844 -8.294 -16.328 18.943 hybrid contribution -0.446 1.069 -0.472 1.251 sum -5.289 -7.225 -16.799 19.037 Atomic orbital electron populations 1.21776 0.93600 1.02123 1.01785 1.20731 0.97018 0.96345 0.92549 1.21778 1.00940 0.94529 1.02206 1.22200 0.97315 0.94573 0.85009 1.86460 1.77471 1.57487 1.15931 1.20071 0.99043 0.88089 0.82633 0.89197 1.45159 1.30283 1.55715 1.08845 1.16015 0.83113 0.80552 0.80329 1.90798 1.26162 1.46148 1.84737 1.45177 1.30219 1.52608 1.09260 1.20833 0.95195 0.97130 0.80865 1.19052 0.94814 0.93615 0.90103 1.20375 1.03678 0.88472 1.41060 0.92258 1.24981 0.94933 0.98451 0.94686 1.70002 1.11484 1.34667 1.34865 0.86589 0.78049 0.85611 0.78035 1.19765 1.21064 1.20980 1.23007 0.93340 0.99610 1.08841 1.22462 0.97308 1.00847 0.97404 1.22832 1.05439 0.96361 0.94661 1.22868 0.92457 1.03339 1.02305 1.23403 0.98404 0.98537 1.01711 0.92853 0.91861 0.92281 0.92789 0.91823 0.92253 0.93432 0.93172 0.77668 0.77173 0.77075 0.91788 0.94446 0.92954 0.90501 0.91755 0.91838 0.89563 0.87828 0.88664 0.89829 0.89984 0.85739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 7.91 37.16 0.29 -1.00 16 2 C -0.07 -0.67 0.42 -154.51 -0.07 -0.73 16 3 C -0.14 -1.53 8.17 37.16 0.30 -1.23 16 4 C 0.09 0.76 5.67 37.15 0.21 0.97 16 5 O -0.57 -4.80 12.31 -35.23 -0.43 -5.23 16 6 C 0.21 2.54 1.71 -67.93 -0.12 2.42 16 7 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 8 N -0.74 -10.13 2.85 -58.67 -0.17 -10.29 16 9 C 0.70 12.63 7.40 -86.91 -0.64 11.99 16 10 O -0.60 -12.77 13.37 5.30 0.07 -12.70 16 11 N -0.72 -13.65 5.48 -65.23 -0.36 -14.01 16 12 C 0.18 4.11 5.50 -4.04 -0.02 4.09 16 13 C 0.02 0.58 1.47 -155.66 -0.23 0.35 16 14 C -0.50 -12.69 8.59 -34.44 -0.30 -12.99 16 15 H 0.06 1.49 7.82 -52.48 -0.41 1.08 16 16 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 17 N -0.87 -24.16 12.65 55.43 0.70 -23.46 16 18 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.21 -4.37 9.96 -26.69 -0.27 -4.64 16 23 C -0.14 -3.25 9.14 -26.69 -0.24 -3.49 16 24 C -0.17 -1.99 4.24 -90.62 -0.38 -2.37 16 25 C -0.17 -2.09 9.73 -26.70 -0.26 -2.35 16 26 C -0.18 -2.50 9.82 -26.69 -0.26 -2.77 16 27 H 0.05 0.50 6.51 -51.93 -0.34 0.16 16 28 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 29 H 0.06 0.55 7.21 -51.93 -0.37 0.17 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 32 H 0.06 0.70 7.44 -51.93 -0.39 0.31 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.05 0.39 6.15 -51.93 -0.32 0.07 16 35 H 0.38 1.55 9.12 45.56 0.42 1.96 16 36 H 0.39 4.67 6.67 -40.82 -0.27 4.39 16 37 H 0.40 6.92 8.35 -40.82 -0.34 6.58 16 38 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.09 2.12 8.14 -51.93 -0.42 1.69 16 45 H 0.10 1.00 6.08 -51.93 -0.32 0.69 16 46 H 0.09 1.27 6.67 -51.93 -0.35 0.92 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.12 2.16 5.01 -51.93 -0.26 1.90 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -29.74 382.35 -9.02 -38.76 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -7.50 Total: 15.56 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.08 Total: -9.91 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: 0.18 Total: -47.76 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.36 Total: -17.93 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.74 -9.02 -38.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596586558.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.475 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds