Wall clock time and date at job start Tue Mar 31 2020 09:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46995 * 2 1 4 4 C 1.52993 * 109.47337 * 239.99752 * 2 1 3 5 5 O 1.42900 * 109.47376 * 59.99860 * 4 2 1 6 6 C 1.53001 * 109.46656 * 119.99513 * 2 1 3 7 7 H 1.09004 * 109.46910 * 179.97438 * 6 2 1 8 8 N 1.46497 * 109.47407 * 300.00222 * 6 2 1 9 9 C 1.34780 * 119.99719 * 204.99860 * 8 6 2 10 10 O 1.21578 * 120.00108 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99704 * 179.97438 * 9 8 6 12 12 C 1.46498 * 119.99966 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46847 * 184.79711 * 12 11 9 14 14 C 1.50694 * 115.55031 * 294.81434 * 13 12 11 15 15 H 1.08008 * 119.99906 * 95.20931 * 14 13 12 16 16 C 1.37882 * 120.00284 * 274.93190 * 14 13 12 17 17 N 1.31518 * 119.99808 * 355.41947 * 16 14 13 18 18 Si 1.86800 * 120.00242 * 175.41794 * 16 14 13 19 19 H 1.48502 * 109.47002 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47254 * 120.00165 * 18 16 14 21 21 H 1.48497 * 109.47138 * 240.00628 * 18 16 14 22 22 C 1.53003 * 117.49932 * 80.48760 * 13 12 11 23 23 C 1.52998 * 117.49502 * 149.14904 * 13 12 11 24 24 C 1.53007 * 109.47016 * 60.00184 * 6 2 1 25 25 C 1.52994 * 117.49944 * 248.74457 * 24 6 2 26 26 C 1.53000 * 117.49882 * 180.08205 * 24 6 2 27 27 H 1.08996 * 109.47603 * 300.00513 * 1 2 3 28 28 H 1.09006 * 109.46588 * 60.00426 * 1 2 3 29 29 H 1.09003 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47069 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.46789 * 299.99565 * 3 2 1 32 32 H 1.08997 * 109.47147 * 59.99845 * 3 2 1 33 33 H 1.09004 * 109.47410 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.47354 * 300.00280 * 4 2 1 35 35 H 0.96705 * 114.00279 * 179.97438 * 5 4 2 36 36 H 0.96996 * 119.99936 * 25.00146 * 8 6 2 37 37 H 0.97009 * 119.99753 * 0.02562 * 11 9 8 38 38 H 1.08993 * 109.47219 * 64.80231 * 12 11 9 39 39 H 1.09000 * 109.47241 * 304.79395 * 12 11 9 40 40 H 0.97001 * 119.99858 * 184.99726 * 17 16 14 41 41 H 1.08997 * 117.49622 * 214.99831 * 22 13 12 42 42 H 1.09000 * 117.49928 * 0.02562 * 22 13 12 43 43 H 1.08996 * 117.50254 * 359.97148 * 23 13 12 44 44 H 1.09005 * 117.49689 * 144.97447 * 23 13 12 45 45 H 1.09000 * 115.55039 * 34.41693 * 24 6 2 46 46 H 1.09000 * 117.49903 * 359.97438 * 25 24 6 47 47 H 1.09003 * 117.50018 * 145.02464 * 25 24 6 48 48 H 1.08998 * 117.49794 * 214.98220 * 26 24 6 49 49 H 1.08995 * 117.49653 * 359.97438 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 8 1.5638 -0.0477 -2.4160 6 6 2.0399 -0.7212 1.2493 7 1 3.1300 -0.7216 1.2492 8 7 1.5516 -0.0305 2.4454 9 6 2.2283 -0.1333 3.6065 10 8 3.2438 -0.7996 3.6612 11 7 1.7793 0.5025 4.7067 12 6 2.5152 0.3912 5.9686 13 6 1.7362 1.1015 7.0775 14 6 1.5939 2.5933 6.9189 15 1 0.7076 3.0054 6.4594 16 6 2.5927 3.4325 7.3655 17 7 3.6271 2.9386 8.0102 18 14 2.4765 5.2708 7.0549 19 1 1.2240 5.5696 6.3151 20 1 2.4684 5.9926 8.3527 21 1 3.6443 5.7117 6.2505 22 6 0.5709 0.3449 7.7183 23 6 1.8712 0.5519 8.4990 24 6 1.5299 -2.1637 1.2494 25 6 0.4936 -2.5466 2.3078 26 6 1.9325 -3.0553 2.4258 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 -0.7217 -1.2489 34 1 1.6767 -1.7489 -1.2492 35 1 1.8495 -0.4511 -3.2472 36 1 0.7411 0.5007 2.4018 37 1 0.9688 1.0338 4.6631 38 1 3.4957 0.8546 5.8594 39 1 2.6370 -0.6607 6.2267 40 1 4.2931 3.5345 8.3876 41 1 -0.2986 0.9262 8.0251 42 1 0.3594 -0.6590 7.3501 43 1 2.5146 -0.3159 8.6441 44 1 1.8575 1.2695 9.3194 45 1 1.4447 -2.6323 0.2689 46 1 0.1754 -1.7709 3.0043 47 1 -0.2733 -3.2673 2.0238 48 1 2.1117 -4.1105 2.2193 49 1 2.5610 -2.6144 3.1994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596586558.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:07 Heat of formation + Delta-G solvation = -54.786100 kcal Electronic energy + Delta-G solvation = -27323.616404 eV Core-core repulsion = 23672.498253 eV Total energy + Delta-G solvation = -3651.118151 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64696 -39.69541 -38.44472 -37.53563 -35.81878 -34.89423 -33.98149 -33.61532 -28.68600 -28.19721 -27.88736 -27.17013 -25.94046 -23.15986 -22.94925 -22.17546 -21.39937 -21.16396 -19.96931 -19.08597 -18.44183 -17.96786 -17.29261 -16.89392 -16.62848 -16.07022 -15.87034 -15.75024 -15.43581 -15.18818 -14.83039 -14.54666 -14.47366 -14.28325 -13.68977 -13.50536 -13.47921 -13.29138 -12.93250 -12.91016 -12.86189 -12.67905 -12.33442 -12.30786 -12.09117 -12.01010 -11.90127 -11.43812 -11.41691 -11.26570 -11.02758 -10.92427 -10.76403 -10.68988 -10.43213 -10.08093 -10.01231 -9.57771 -8.08332 -6.22050 1.40647 1.44835 1.53364 1.82121 2.29390 2.42650 2.95209 3.19963 3.28928 3.41867 3.59070 3.71529 3.81098 4.05893 4.14552 4.18547 4.26379 4.27442 4.38054 4.54587 4.57704 4.62769 4.66666 4.69227 4.76434 4.83111 4.87401 4.89262 5.00679 5.04032 5.06786 5.07737 5.12137 5.17993 5.29909 5.30544 5.40569 5.45293 5.49490 5.58072 5.65859 5.67395 5.77218 5.81385 6.18281 6.38591 6.85565 6.98292 7.26756 7.47532 7.75275 8.98806 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015748 B = 0.003850 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.561146 B = 7271.047310 C = 8386.495670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 C -0.135 4.135 4 C 0.090 3.910 5 O -0.581 6.581 6 C 0.207 3.793 7 H 0.065 0.935 8 N -0.724 5.724 9 C 0.700 3.300 10 O -0.632 6.632 11 N -0.718 5.718 12 C 0.203 3.797 13 C 0.005 3.995 14 C -0.501 4.501 15 H 0.063 0.937 16 C 0.025 3.975 17 N -0.907 5.907 18 Si 0.948 3.052 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.290 1.290 22 C -0.176 4.176 23 C -0.154 4.154 24 C -0.157 4.157 25 C -0.163 4.163 26 C -0.206 4.206 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.396 0.604 36 H 0.405 0.595 37 H 0.405 0.595 38 H 0.020 0.980 39 H 0.033 0.967 40 H 0.258 0.742 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.064 0.936 45 H 0.132 0.868 46 H 0.082 0.918 47 H 0.107 0.893 48 H 0.096 0.904 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 -8.600 -19.063 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.060 4.060 3 C -0.193 4.193 4 C 0.012 3.988 5 O -0.390 6.390 6 C 0.102 3.898 7 H 0.083 0.917 8 N -0.381 5.381 9 C 0.400 3.600 10 O -0.514 6.514 11 N -0.371 5.371 12 C 0.078 3.922 13 C 0.004 3.996 14 C -0.539 4.539 15 H 0.081 0.919 16 C -0.176 4.176 17 N -0.545 5.545 18 Si 0.774 3.226 19 H -0.185 1.185 20 H -0.210 1.210 21 H -0.217 1.217 22 C -0.213 4.213 23 C -0.192 4.192 24 C -0.176 4.176 25 C -0.200 4.200 26 C -0.242 4.242 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.246 0.754 36 H 0.242 0.758 37 H 0.240 0.760 38 H 0.039 0.961 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.150 0.850 46 H 0.100 0.900 47 H 0.125 0.875 48 H 0.115 0.885 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.157 -8.746 -18.515 21.691 hybrid contribution 0.275 1.183 0.146 1.224 sum -6.882 -7.562 -18.369 21.023 Atomic orbital electron populations 1.21744 0.92586 1.02720 1.01814 1.20659 0.97656 0.95430 0.92256 1.21754 1.00250 0.95384 1.01900 1.22119 0.97281 0.94962 0.84474 1.86405 1.77651 1.58100 1.16797 1.20162 0.97783 0.89143 0.82758 0.91732 1.44998 1.29996 1.55249 1.07851 1.16106 0.82887 0.79998 0.81024 1.90791 1.27840 1.47453 1.85355 1.44939 1.30294 1.53199 1.08653 1.20339 0.93465 0.96125 0.82242 1.19064 0.96929 0.93195 0.90365 1.20683 1.03409 0.89713 1.40054 0.91870 1.25683 0.94850 1.02257 0.94803 1.70123 1.12324 1.35798 1.36273 0.85663 0.78015 0.81155 0.77723 1.18493 1.21001 1.21698 1.22978 0.92221 1.00241 1.05889 1.22382 0.99472 1.00685 0.96684 1.22870 1.04205 0.95156 0.95392 1.22892 0.92113 1.03176 1.01859 1.23276 0.99242 0.99548 1.02178 0.92834 0.91837 0.91359 0.93861 0.91439 0.93173 0.93524 0.91531 0.75389 0.75775 0.76047 0.96114 0.94829 0.93294 0.89720 0.89542 0.91387 0.91716 0.85006 0.89999 0.87499 0.88542 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 7.91 71.98 0.57 -1.56 16 2 C -0.06 -1.09 0.42 -52.18 -0.02 -1.11 16 3 C -0.14 -2.89 8.17 71.98 0.59 -2.30 16 4 C 0.09 1.32 5.67 71.98 0.41 1.73 16 5 O -0.58 -8.15 12.31 -148.98 -1.83 -9.99 16 6 C 0.21 4.84 1.71 44.99 0.08 4.92 16 7 H 0.06 1.89 7.58 -2.38 -0.02 1.87 16 8 N -0.72 -19.25 2.85 -457.81 -1.30 -20.55 16 9 C 0.70 25.54 7.40 179.05 1.33 26.86 16 10 O -0.63 -27.91 13.37 -3.96 -0.05 -27.97 16 11 N -0.72 -27.32 5.48 -478.54 -2.62 -29.94 16 12 C 0.20 9.34 5.50 86.38 0.48 9.82 16 13 C 0.01 0.25 1.47 -52.93 -0.08 0.17 16 14 C -0.50 -25.45 8.59 25.60 0.22 -25.23 16 15 H 0.06 3.10 7.82 -2.91 -0.02 3.08 16 16 C 0.02 1.31 5.43 84.66 0.46 1.77 16 17 N -0.91 -51.43 12.65 21.45 0.27 -51.16 16 18 Si 0.95 42.37 29.54 68.60 2.03 44.40 16 19 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 22 C -0.18 -7.04 9.96 30.62 0.30 -6.73 16 23 C -0.15 -7.09 9.14 30.62 0.28 -6.81 16 24 C -0.16 -3.25 4.24 -10.79 -0.05 -3.30 16 25 C -0.16 -3.56 9.73 30.62 0.30 -3.26 16 26 C -0.21 -5.41 9.82 30.62 0.30 -5.11 16 27 H 0.05 0.86 6.51 -2.39 -0.02 0.84 16 28 H 0.06 1.07 7.68 -2.38 -0.02 1.05 16 29 H 0.07 1.00 7.21 -2.39 -0.02 0.98 16 30 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.07 1.39 7.68 -2.39 -0.02 1.37 16 32 H 0.05 1.13 7.44 -2.39 -0.02 1.12 16 33 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.07 0.77 6.15 -2.39 -0.01 0.75 16 35 H 0.40 2.07 9.12 -74.05 -0.68 1.39 16 36 H 0.41 9.03 6.67 -92.71 -0.62 8.41 16 37 H 0.40 13.84 8.35 -92.70 -0.77 13.06 16 38 H 0.02 1.11 8.14 -2.39 -0.02 1.10 16 39 H 0.03 1.54 8.09 -2.39 -0.02 1.53 16 40 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 41 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 43 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 44 H 0.06 3.24 8.14 -2.38 -0.02 3.22 16 45 H 0.13 2.03 6.08 -2.39 -0.01 2.02 16 46 H 0.08 2.02 6.67 -2.39 -0.02 2.01 16 47 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 49 H 0.09 3.03 5.01 -2.39 -0.01 3.01 16 Total: -1.00 -65.49 382.35 0.55 -64.95 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -1.10 Total: 40.43 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 5.16 Total: -10.16 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -3.66 Total: -101.65 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -1.89 Total: -37.96 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -65.49 0.55 -64.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596586558.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.161 kcal (2) G-P(sol) polarization free energy of solvation -65.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds