Wall clock time and date at job start Tue Mar 31 2020 10:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47099 * 2 1 4 4 C 1.50695 * 109.47245 * 120.00325 * 2 1 3 5 5 O 1.21289 * 119.99717 * 255.14887 * 4 2 1 6 6 N 1.34776 * 120.00188 * 75.14410 * 4 2 1 7 7 C 1.46934 * 120.62714 * 184.03806 * 6 4 2 8 8 C 1.53194 * 108.77084 * 126.37056 * 7 6 4 9 9 C 1.53041 * 109.31494 * 54.63310 * 8 7 6 10 10 C 1.53041 * 109.53888 * 298.63463 * 9 8 7 11 11 H 1.08997 * 109.49860 * 301.41047 * 10 9 8 12 12 C 1.50698 * 109.49855 * 181.31209 * 10 9 8 13 13 H 1.07998 * 120.00478 * 275.44036 * 12 10 9 14 14 C 1.37876 * 119.99765 * 95.43822 * 12 10 9 15 15 N 1.31518 * 120.00121 * 179.31562 * 14 12 10 16 16 Si 1.86806 * 119.99974 * 359.31029 * 14 12 10 17 17 H 1.48497 * 109.46756 * 90.65915 * 16 14 12 18 18 H 1.48499 * 109.47144 * 210.65546 * 16 14 12 19 19 H 1.48495 * 109.47149 * 330.65471 * 16 14 12 20 20 C 1.46919 * 120.63016 * 4.01659 * 6 4 2 21 21 N 1.46901 * 109.46880 * 240.00430 * 2 1 3 22 22 C 1.47016 * 110.99711 * 183.63711 * 21 2 1 23 23 C 1.53098 * 109.25605 * 177.60463 * 22 21 2 24 24 O 1.43018 * 109.25975 * 56.84583 * 23 22 21 25 25 C 1.43015 * 113.73955 * 301.33012 * 24 23 22 26 26 C 1.47015 * 111.00417 * 59.99664 * 21 2 1 27 27 H 1.08999 * 109.46984 * 299.99583 * 1 2 3 28 28 H 1.09001 * 109.47028 * 60.00357 * 1 2 3 29 29 H 1.08994 * 109.47082 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47025 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47003 * 300.00176 * 3 2 1 32 32 H 1.08992 * 109.47175 * 60.00142 * 3 2 1 33 33 H 1.09001 * 109.58568 * 6.58513 * 7 6 4 34 34 H 1.08997 * 109.58294 * 246.15245 * 7 6 4 35 35 H 1.09000 * 109.50137 * 294.68175 * 8 7 6 36 36 H 1.09003 * 109.49490 * 174.58103 * 8 7 6 37 37 H 1.08993 * 109.46529 * 178.61036 * 9 8 7 38 38 H 1.09004 * 109.44548 * 58.64316 * 9 8 7 39 39 H 0.97001 * 119.99698 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.58561 * 113.84399 * 20 6 4 41 41 H 1.09000 * 109.58616 * 353.41904 * 20 6 4 42 42 H 1.09001 * 109.50528 * 297.53535 * 22 21 2 43 43 H 1.08999 * 109.51197 * 57.67094 * 22 21 2 44 44 H 1.08997 * 109.50811 * 296.91140 * 23 22 21 45 45 H 1.09000 * 109.50816 * 176.77944 * 23 22 21 46 46 H 1.09002 * 109.50548 * 298.73717 * 25 24 23 47 47 H 1.08995 * 109.54223 * 178.62866 * 25 24 23 48 48 H 1.09000 * 109.50280 * 302.33028 * 26 21 2 49 49 H 1.08995 * 109.50192 * 62.41362 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.4884 -0.0722 2.1555 6 7 1.9749 -2.0550 1.3029 7 6 2.3784 -2.7565 2.5293 8 6 1.2359 -3.6776 2.9689 9 6 0.8580 -4.6035 1.8105 10 6 0.3745 -3.7672 0.6235 11 1 -0.4816 -3.1650 0.9274 12 6 -0.0278 -4.6812 -0.5051 13 1 0.7182 -5.0501 -1.1934 14 6 -1.3484 -5.0465 -0.6589 15 7 -1.7016 -5.8333 -1.6518 16 14 -2.6357 -4.4241 0.5431 17 1 -3.2038 -3.1467 0.0424 18 1 -3.7198 -5.4307 0.6727 19 1 -2.0071 -4.2002 1.8697 20 6 1.5072 -2.8471 0.1573 21 7 2.0197 -0.6924 -1.1995 22 6 3.4867 -0.7879 -1.1907 23 6 3.9494 -1.5666 -2.4250 24 8 3.4557 -0.9216 -3.6022 25 6 2.0304 -0.8121 -3.6440 26 6 1.5482 -0.0258 -2.4221 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 2.5847 -2.0296 3.3149 34 1 3.2715 -3.3499 2.3337 35 1 0.3716 -3.0762 3.2508 36 1 1.5580 -4.2749 3.8219 37 1 0.0620 -5.2767 2.1285 38 1 1.7295 -5.1867 1.5129 39 1 -2.6308 -6.0900 -1.7601 40 1 2.3293 -3.4479 -0.2316 41 1 1.1388 -2.1801 -0.6221 42 1 3.9167 0.2135 -1.2099 43 1 3.8123 -1.3074 -0.2895 44 1 3.5632 -2.5848 -2.3789 45 1 5.0387 -1.5907 -2.4529 46 1 1.5884 -1.8085 -3.6332 47 1 1.7313 -0.2911 -4.5534 48 1 0.4588 0.0110 -2.4195 49 1 1.9466 0.9880 -2.4605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597902910.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:06 Heat of formation + Delta-G solvation = -62.568315 kcal Electronic energy + Delta-G solvation = -29304.225792 eV Core-core repulsion = 25652.770178 eV Total energy + Delta-G solvation = -3651.455613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.93218 -38.93935 -37.13704 -36.30724 -33.18461 -32.03781 -31.86651 -31.10016 -30.43017 -27.32984 -26.62121 -25.36836 -25.00121 -23.90711 -22.48639 -21.20687 -20.32140 -19.36854 -18.24466 -17.49413 -16.74284 -16.13569 -15.85805 -15.40677 -15.13541 -14.96205 -14.62025 -14.58084 -14.28000 -13.99914 -13.75120 -13.46892 -13.04591 -12.81260 -12.57940 -12.42300 -12.26566 -12.14916 -12.05342 -11.92095 -11.80820 -11.36170 -11.28218 -11.18403 -11.07715 -10.98612 -10.75850 -10.43523 -10.30374 -10.10612 -9.74268 -9.70731 -9.61198 -9.29338 -9.02340 -8.60207 -8.05336 -7.96599 -6.11946 -4.10934 2.84690 3.23087 3.33858 3.36881 3.46025 3.68540 3.93530 4.37860 4.60582 4.88651 4.93432 5.03781 5.06689 5.12966 5.18276 5.27283 5.32978 5.48478 5.52978 5.53880 5.62058 5.65204 5.68079 5.72408 5.78056 5.83919 5.90087 5.92536 5.97989 6.02961 6.08750 6.15037 6.29193 6.31223 6.34474 6.47031 6.71526 6.79192 6.84261 6.87827 6.89160 7.13177 7.19192 7.31260 7.43918 7.69608 7.98579 8.45367 8.55932 8.93453 9.51646 11.01058 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012357 B = 0.006669 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.389061 B = 4197.764651 C = 5115.583526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.092 3.908 3 C -0.162 4.162 4 C 0.525 3.475 5 O -0.564 6.564 6 N -0.593 5.593 7 C 0.112 3.888 8 C -0.137 4.137 9 C -0.114 4.114 10 C 0.004 3.996 11 H 0.030 0.970 12 C -0.505 4.505 13 H 0.074 0.926 14 C 0.074 3.926 15 N -0.899 5.899 16 Si 0.871 3.129 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.263 1.263 20 C 0.097 3.903 21 N -0.507 5.507 22 C 0.011 3.989 23 C 0.066 3.934 24 O -0.388 6.388 25 C 0.062 3.938 26 C 0.009 3.991 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.263 0.737 40 H 0.052 0.948 41 H 0.134 0.866 42 H 0.047 0.953 43 H 0.086 0.914 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.084 11.044 0.533 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.000 4.000 3 C -0.221 4.221 4 C 0.312 3.688 5 O -0.443 6.443 6 N -0.323 5.323 7 C -0.011 4.011 8 C -0.175 4.175 9 C -0.152 4.152 10 C -0.016 4.016 11 H 0.048 0.952 12 C -0.543 4.543 13 H 0.092 0.908 14 C -0.128 4.128 15 N -0.537 5.537 16 Si 0.699 3.301 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.188 1.188 20 C -0.024 4.024 21 N -0.233 5.233 22 C -0.117 4.117 23 C -0.012 4.012 24 O -0.306 6.306 25 C -0.015 4.015 26 C -0.118 4.118 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.152 0.848 42 H 0.065 0.935 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.112 0.888 46 H 0.088 0.912 47 H 0.114 0.886 48 H 0.112 0.888 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.100 10.843 0.782 12.984 hybrid contribution -0.746 0.735 0.955 1.417 sum 6.354 11.578 1.737 13.321 Atomic orbital electron populations 1.22008 0.91365 1.04628 1.02479 1.21263 0.97333 0.92622 0.88809 1.22208 1.01771 0.95453 1.02669 1.20195 0.78151 0.82450 0.87995 1.90634 1.47416 1.66222 1.40043 1.48398 1.62821 1.05303 1.15768 1.21542 0.96947 0.95232 0.87350 1.22005 0.97981 0.98337 0.99160 1.21873 1.00446 0.97777 0.95092 1.19524 0.93926 0.93972 0.94200 0.95156 1.20846 0.94117 1.27902 1.11423 0.90794 1.25008 0.98304 0.94618 0.94827 1.69897 1.17700 1.35676 1.30423 0.86951 0.81609 0.78745 0.82822 1.20365 1.21678 1.18778 1.22896 0.97120 0.94925 0.87487 1.62859 1.09823 1.49315 1.01274 1.22884 0.87996 1.00416 1.00366 1.22646 0.98935 0.96262 0.83310 1.87942 1.21409 1.80098 1.41170 1.22697 0.81022 1.00908 0.96859 1.22957 1.01964 0.96645 0.90247 0.91705 0.91220 0.89848 0.92153 0.91847 0.91016 0.90297 0.92098 0.92572 0.92163 0.92906 0.92834 0.92707 0.92974 0.84842 0.93496 0.89606 0.91448 0.88759 0.91162 0.88604 0.88799 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 7.99 37.16 0.30 -1.77 16 2 C 0.09 1.32 0.29 -132.75 -0.04 1.28 16 3 C -0.16 -2.07 7.18 37.16 0.27 -1.81 16 4 C 0.53 9.00 5.09 -10.99 -0.06 8.94 16 5 O -0.56 -10.94 15.42 5.55 0.09 -10.85 16 6 N -0.59 -10.24 2.64 -172.77 -0.46 -10.70 16 7 C 0.11 1.83 6.42 -3.71 -0.02 1.81 16 8 C -0.14 -2.31 6.08 -26.61 -0.16 -2.47 16 9 C -0.11 -2.26 5.09 -26.69 -0.14 -2.39 16 10 C 0.00 0.08 1.81 -91.65 -0.17 -0.09 16 11 H 0.03 0.69 5.17 -51.93 -0.27 0.42 16 12 C -0.50 -12.97 8.87 -34.44 -0.31 -13.27 16 13 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 14 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 15 N -0.90 -26.09 13.96 55.43 0.77 -25.32 16 16 Si 0.87 20.63 26.74 -169.99 -4.55 16.08 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.26 -6.04 6.55 56.52 0.37 -5.67 16 20 C 0.10 1.79 3.79 -3.71 -0.01 1.77 16 21 N -0.51 -6.92 1.43 -219.99 -0.31 -7.24 16 22 C 0.01 0.15 4.54 -3.71 -0.02 0.13 16 23 C 0.07 0.82 7.01 37.21 0.26 1.08 16 24 O -0.39 -5.23 10.83 -35.23 -0.38 -5.61 16 25 C 0.06 0.75 7.01 37.21 0.26 1.01 16 26 C 0.01 0.11 4.87 -3.71 -0.02 0.09 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.82 6.35 -51.93 -0.33 0.49 16 29 H 0.08 1.37 6.40 -51.93 -0.33 1.04 16 30 H 0.06 0.80 6.54 -51.93 -0.34 0.46 16 31 H 0.06 0.69 6.46 -51.93 -0.34 0.35 16 32 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 33 H 0.08 1.30 7.03 -51.93 -0.36 0.93 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 1.11 7.68 -51.93 -0.40 0.71 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.13 2.44 3.56 -51.93 -0.18 2.26 16 42 H 0.05 0.60 6.52 -51.93 -0.34 0.26 16 43 H 0.09 1.22 6.46 -51.93 -0.34 0.89 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 1.06 6.19 -51.93 -0.32 0.74 16 49 H 0.05 0.52 6.44 -51.93 -0.33 0.19 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -29.65 353.81 -7.57 -37.22 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -8.11 Total: 4.85 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 0.05 Total: -3.77 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.00 Total: -43.25 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.30 Total: -16.46 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.55 Total: 16.08 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.65 -7.57 -37.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902910.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.351 kcal (2) G-P(sol) polarization free energy of solvation -29.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds