Wall clock time and date at job start Tue Mar 31 2020 10:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47099 * 2 1 4 4 C 1.50695 * 109.47245 * 120.00325 * 2 1 3 5 5 O 1.21289 * 119.99717 * 255.14887 * 4 2 1 6 6 N 1.34776 * 120.00188 * 75.14410 * 4 2 1 7 7 C 1.46934 * 120.62714 * 184.03806 * 6 4 2 8 8 C 1.53194 * 108.77084 * 126.37056 * 7 6 4 9 9 C 1.53041 * 109.31494 * 54.63310 * 8 7 6 10 10 C 1.53041 * 109.53888 * 298.63463 * 9 8 7 11 11 H 1.08997 * 109.49860 * 301.41047 * 10 9 8 12 12 C 1.50698 * 109.49855 * 181.31209 * 10 9 8 13 13 H 1.07998 * 120.00478 * 275.44036 * 12 10 9 14 14 C 1.37876 * 119.99765 * 95.43822 * 12 10 9 15 15 N 1.31518 * 120.00121 * 179.31562 * 14 12 10 16 16 Si 1.86806 * 119.99974 * 359.31029 * 14 12 10 17 17 H 1.48497 * 109.46756 * 90.65915 * 16 14 12 18 18 H 1.48499 * 109.47144 * 210.65546 * 16 14 12 19 19 H 1.48495 * 109.47149 * 330.65471 * 16 14 12 20 20 C 1.46919 * 120.63016 * 4.01659 * 6 4 2 21 21 N 1.46901 * 109.46880 * 240.00430 * 2 1 3 22 22 C 1.47016 * 110.99711 * 183.63711 * 21 2 1 23 23 C 1.53098 * 109.25605 * 177.60463 * 22 21 2 24 24 O 1.43018 * 109.25975 * 56.84583 * 23 22 21 25 25 C 1.43015 * 113.73955 * 301.33012 * 24 23 22 26 26 C 1.47015 * 111.00417 * 59.99664 * 21 2 1 27 27 H 1.08999 * 109.46984 * 299.99583 * 1 2 3 28 28 H 1.09001 * 109.47028 * 60.00357 * 1 2 3 29 29 H 1.08994 * 109.47082 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47025 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47003 * 300.00176 * 3 2 1 32 32 H 1.08992 * 109.47175 * 60.00142 * 3 2 1 33 33 H 1.09001 * 109.58568 * 6.58513 * 7 6 4 34 34 H 1.08997 * 109.58294 * 246.15245 * 7 6 4 35 35 H 1.09000 * 109.50137 * 294.68175 * 8 7 6 36 36 H 1.09003 * 109.49490 * 174.58103 * 8 7 6 37 37 H 1.08993 * 109.46529 * 178.61036 * 9 8 7 38 38 H 1.09004 * 109.44548 * 58.64316 * 9 8 7 39 39 H 0.97001 * 119.99698 * 180.02562 * 15 14 12 40 40 H 1.08998 * 109.58561 * 113.84399 * 20 6 4 41 41 H 1.09000 * 109.58616 * 353.41904 * 20 6 4 42 42 H 1.09001 * 109.50528 * 297.53535 * 22 21 2 43 43 H 1.08999 * 109.51197 * 57.67094 * 22 21 2 44 44 H 1.08997 * 109.50811 * 296.91140 * 23 22 21 45 45 H 1.09000 * 109.50816 * 176.77944 * 23 22 21 46 46 H 1.09002 * 109.50548 * 298.73717 * 25 24 23 47 47 H 1.08995 * 109.54223 * 178.62866 * 25 24 23 48 48 H 1.09000 * 109.50280 * 302.33028 * 26 21 2 49 49 H 1.08995 * 109.50192 * 62.41362 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.4884 -0.0722 2.1555 6 7 1.9749 -2.0550 1.3029 7 6 2.3784 -2.7565 2.5293 8 6 1.2359 -3.6776 2.9689 9 6 0.8580 -4.6035 1.8105 10 6 0.3745 -3.7672 0.6235 11 1 -0.4816 -3.1650 0.9274 12 6 -0.0278 -4.6812 -0.5051 13 1 0.7182 -5.0501 -1.1934 14 6 -1.3484 -5.0465 -0.6589 15 7 -1.7016 -5.8333 -1.6518 16 14 -2.6357 -4.4241 0.5431 17 1 -3.2038 -3.1467 0.0424 18 1 -3.7198 -5.4307 0.6727 19 1 -2.0071 -4.2002 1.8697 20 6 1.5072 -2.8471 0.1573 21 7 2.0197 -0.6924 -1.1995 22 6 3.4867 -0.7879 -1.1907 23 6 3.9494 -1.5666 -2.4250 24 8 3.4557 -0.9216 -3.6022 25 6 2.0304 -0.8121 -3.6440 26 6 1.5482 -0.0258 -2.4221 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 2.5847 -2.0296 3.3149 34 1 3.2715 -3.3499 2.3337 35 1 0.3716 -3.0762 3.2508 36 1 1.5580 -4.2749 3.8219 37 1 0.0620 -5.2767 2.1285 38 1 1.7295 -5.1867 1.5129 39 1 -2.6308 -6.0900 -1.7601 40 1 2.3293 -3.4479 -0.2316 41 1 1.1388 -2.1801 -0.6221 42 1 3.9167 0.2135 -1.2099 43 1 3.8123 -1.3074 -0.2895 44 1 3.5632 -2.5848 -2.3789 45 1 5.0387 -1.5907 -2.4529 46 1 1.5884 -1.8085 -3.6332 47 1 1.7313 -0.2911 -4.5534 48 1 0.4588 0.0110 -2.4195 49 1 1.9466 0.9880 -2.4605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902910.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:05 Heat of formation + Delta-G solvation = -80.572991 kcal Electronic energy + Delta-G solvation = -29305.006533 eV Core-core repulsion = 25652.770178 eV Total energy + Delta-G solvation = -3652.236355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15348 -40.12340 -38.58957 -37.49455 -35.03499 -33.51105 -33.05370 -32.28629 -31.93597 -28.39560 -27.68889 -27.00022 -26.57774 -25.02410 -23.75681 -22.67455 -21.60232 -20.73100 -19.66699 -18.95023 -18.39257 -17.26034 -17.13973 -16.66163 -16.43874 -16.11518 -15.95762 -15.77183 -15.59648 -15.33414 -15.09680 -14.94417 -14.51611 -14.42111 -14.01278 -13.81421 -13.49795 -13.46280 -13.13059 -12.99973 -12.92809 -12.85274 -12.82731 -12.49984 -12.38586 -12.31315 -12.00970 -11.86705 -11.83450 -11.50935 -11.40403 -11.36814 -10.90162 -10.80641 -10.66850 -10.49510 -9.47751 -9.13354 -8.22563 -6.24002 1.33983 1.39209 1.48135 1.52346 2.13589 2.38171 2.61553 2.96758 3.13834 3.39078 3.83149 3.87771 3.94226 4.01774 4.10551 4.13239 4.15776 4.28861 4.29305 4.36566 4.44390 4.54533 4.60247 4.62732 4.64699 4.67872 4.75495 4.78076 4.81076 4.83404 4.89519 4.92326 5.02445 5.03166 5.12947 5.15385 5.20348 5.24734 5.31417 5.57870 5.63746 5.69843 5.81062 5.85118 5.90030 6.19205 6.38995 6.55351 6.82876 7.17966 7.41292 8.93848 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012357 B = 0.006669 C = 0.005472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.389061 B = 4197.764651 C = 5115.583526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.094 3.906 3 C -0.154 4.154 4 C 0.523 3.477 5 O -0.586 6.586 6 N -0.595 5.595 7 C 0.110 3.890 8 C -0.126 4.126 9 C -0.113 4.113 10 C 0.003 3.997 11 H 0.024 0.976 12 C -0.496 4.496 13 H 0.038 0.962 14 C 0.021 3.979 15 N -0.947 5.947 16 Si 0.927 3.073 17 H -0.267 1.267 18 H -0.294 1.294 19 H -0.251 1.251 20 C 0.115 3.885 21 N -0.522 5.522 22 C 0.018 3.982 23 C 0.068 3.932 24 O -0.397 6.397 25 C 0.061 3.939 26 C 0.012 3.988 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.053 0.947 39 H 0.263 0.737 40 H 0.044 0.956 41 H 0.139 0.861 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.050 0.950 45 H 0.115 0.885 46 H 0.048 0.952 47 H 0.121 0.879 48 H 0.102 0.898 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.335 13.086 1.303 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.002 3.998 3 C -0.213 4.213 4 C 0.312 3.688 5 O -0.467 6.467 6 N -0.325 5.325 7 C -0.012 4.012 8 C -0.164 4.164 9 C -0.151 4.151 10 C -0.016 4.016 11 H 0.043 0.957 12 C -0.535 4.535 13 H 0.056 0.944 14 C -0.176 4.176 15 N -0.587 5.587 16 Si 0.753 3.247 17 H -0.192 1.192 18 H -0.221 1.221 19 H -0.175 1.175 20 C -0.007 4.007 21 N -0.248 5.248 22 C -0.110 4.110 23 C -0.009 4.009 24 O -0.315 6.315 25 C -0.016 4.016 26 C -0.115 4.115 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.156 0.844 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.133 0.867 46 H 0.066 0.934 47 H 0.139 0.861 48 H 0.120 0.880 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.367 12.899 1.563 14.937 hybrid contribution -0.740 0.058 0.673 1.002 sum 6.627 12.957 2.236 14.724 Atomic orbital electron populations 1.22003 0.91009 1.03298 1.03991 1.21246 0.97487 0.93222 0.87836 1.22150 1.01365 0.94243 1.03544 1.20681 0.77392 0.82132 0.88628 1.90621 1.48395 1.66467 1.41168 1.48384 1.62815 1.05603 1.15660 1.21634 0.97236 0.95301 0.87078 1.21910 0.97941 0.97885 0.98704 1.21757 0.99927 0.97859 0.95563 1.19482 0.94883 0.93810 0.93465 0.95746 1.21047 0.93225 1.27590 1.11598 0.94350 1.25718 1.00458 0.95018 0.96386 1.70036 1.18118 1.37869 1.32692 0.86031 0.79018 0.78372 0.81279 1.19208 1.22111 1.17473 1.22564 0.95727 0.94508 0.87918 1.62751 1.10223 1.50019 1.01793 1.22807 0.87749 1.00605 0.99854 1.22673 1.00070 0.95164 0.83026 1.87933 1.22094 1.80034 1.41472 1.22795 0.80367 1.00162 0.98275 1.23004 1.02457 0.97081 0.88978 0.91302 0.88710 0.92468 0.92692 0.89508 0.91563 0.89985 0.90730 0.93290 0.89284 0.94335 0.92843 0.92804 0.93744 0.84441 0.92749 0.90974 0.93195 0.86738 0.93391 0.86125 0.88008 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 7.99 71.98 0.58 -3.20 16 2 C 0.09 2.52 0.29 2.78 0.00 2.53 16 3 C -0.15 -3.53 7.18 71.98 0.52 -3.02 16 4 C 0.52 17.17 5.09 87.66 0.45 17.62 16 5 O -0.59 -21.81 15.42 -3.06 -0.05 -21.86 16 6 N -0.59 -19.86 2.64 -818.90 -2.16 -22.02 16 7 C 0.11 3.38 6.42 86.36 0.55 3.94 16 8 C -0.13 -4.00 6.08 30.67 0.19 -3.81 16 9 C -0.11 -4.38 5.09 30.62 0.16 -4.22 16 10 C 0.00 0.14 1.81 -11.46 -0.02 0.12 16 11 H 0.02 1.08 5.17 -2.39 -0.01 1.07 16 12 C -0.50 -26.08 8.87 25.60 0.23 -25.85 16 13 H 0.04 2.25 8.06 -2.91 -0.02 2.22 16 14 C 0.02 1.18 5.47 84.65 0.46 1.64 16 15 N -0.95 -56.47 13.96 21.45 0.30 -56.17 16 16 Si 0.93 42.60 26.74 68.60 1.83 44.43 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 19 H -0.25 -10.90 6.55 99.48 0.65 -10.25 16 20 C 0.11 4.20 3.79 86.36 0.33 4.53 16 21 N -0.52 -13.48 1.43 -849.92 -1.21 -14.69 16 22 C 0.02 0.44 4.54 86.31 0.39 0.83 16 23 C 0.07 1.63 7.01 72.01 0.50 2.14 16 24 O -0.40 -10.13 10.83 -148.98 -1.61 -11.74 16 25 C 0.06 1.38 7.01 72.01 0.50 1.89 16 26 C 0.01 0.25 4.87 86.31 0.42 0.67 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.09 1.94 6.35 -2.39 -0.02 1.93 16 29 H 0.06 1.80 6.40 -2.39 -0.02 1.78 16 30 H 0.05 1.32 6.54 -2.39 -0.02 1.31 16 31 H 0.09 1.57 6.46 -2.38 -0.02 1.55 16 32 H 0.07 1.60 7.94 -2.39 -0.02 1.58 16 33 H 0.08 2.53 7.03 -2.39 -0.02 2.51 16 34 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.04 1.58 7.68 -2.39 -0.02 1.57 16 38 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.26 14.86 8.31 -92.71 -0.77 14.08 16 40 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.14 5.00 3.56 -2.39 -0.01 4.99 16 42 H 0.05 1.28 6.52 -2.39 -0.02 1.26 16 43 H 0.07 1.99 6.46 -2.39 -0.02 1.98 16 44 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.10 2.02 6.19 -2.39 -0.01 2.01 16 49 H 0.06 1.18 6.44 -2.39 -0.02 1.16 16 Total: -1.00 -64.31 353.81 3.24 -61.08 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.88 Total: 25.17 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.25 Total: -4.20 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -3.07 Total: -92.88 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -1.66 Total: -33.60 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.83 Total: 44.43 kcal Total: -64.31 3.24 -61.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902910.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.497 kcal (2) G-P(sol) polarization free energy of solvation -64.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds