Wall clock time and date at job start Tue Mar 31 2020 10:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47104 * 2 1 4 4 H 1.09005 * 109.48134 * 55.01979 * 3 2 1 5 5 C 1.53091 * 109.48302 * 175.05219 * 3 2 1 6 6 C 1.53175 * 109.16734 * 177.59010 * 5 3 2 7 7 H 1.08990 * 109.54776 * 183.15822 * 6 5 3 8 8 C 1.50707 * 109.61336 * 62.93170 * 6 5 3 9 9 O 1.21276 * 119.99866 * 0.40405 * 8 6 5 10 10 N 1.34776 * 119.99412 * 180.40193 * 8 6 5 11 11 C 1.46510 * 119.99530 * 180.02562 * 10 8 6 12 12 C 1.53038 * 109.45909 * 275.06789 * 11 10 8 13 13 C 1.53195 * 109.31129 * 178.61346 * 12 11 10 14 14 N 1.46921 * 108.77380 * 54.63342 * 13 12 11 15 15 C 1.36944 * 120.63196 * 126.37125 * 14 13 12 16 16 H 1.08003 * 119.99521 * 331.86062 * 15 14 13 17 17 C 1.38803 * 119.99982 * 151.85803 * 15 14 13 18 18 N 1.31617 * 120.00471 * 343.07052 * 17 15 14 19 19 Si 1.86808 * 119.99730 * 163.06648 * 17 15 14 20 20 H 1.48498 * 109.46824 * 90.00302 * 19 17 15 21 21 H 1.48499 * 109.47244 * 210.00163 * 19 17 15 22 22 H 1.48503 * 109.47105 * 330.00318 * 19 17 15 23 23 C 1.46927 * 118.74462 * 306.39135 * 14 13 12 24 24 C 1.53039 * 109.45778 * 154.99849 * 11 10 8 25 25 C 1.53185 * 109.03745 * 303.02340 * 6 5 3 26 26 C 1.53095 * 109.16015 * 56.97626 * 25 6 5 27 27 O 1.42893 * 109.41861 * 302.39252 * 26 25 6 28 28 H 1.08997 * 109.47320 * 300.00142 * 1 2 3 29 29 H 1.09005 * 109.47167 * 60.00262 * 1 2 3 30 30 H 1.09004 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47320 * 239.99858 * 2 1 3 32 32 H 1.09003 * 109.46674 * 119.99911 * 2 1 3 33 33 H 1.08998 * 109.52134 * 297.49989 * 5 3 2 34 34 H 1.09004 * 109.51560 * 57.68813 * 5 3 2 35 35 H 0.96996 * 120.00767 * 359.97438 * 10 8 6 36 36 H 1.09003 * 109.45421 * 35.02498 * 11 10 8 37 37 H 1.08990 * 109.49914 * 298.56520 * 12 11 10 38 38 H 1.09005 * 109.49836 * 58.66208 * 12 11 10 39 39 H 1.09004 * 109.58354 * 294.85166 * 13 12 11 40 40 H 1.08996 * 109.70555 * 174.49447 * 13 12 11 41 41 H 0.97003 * 120.00131 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.58515 * 293.82639 * 23 14 13 43 43 H 1.08995 * 109.71253 * 173.46425 * 23 14 13 44 44 H 1.08999 * 109.49921 * 301.33606 * 24 11 10 45 45 H 1.08998 * 109.49924 * 61.40589 * 24 11 10 46 46 H 1.08998 * 109.52387 * 297.07430 * 25 6 5 47 47 H 1.09004 * 109.57460 * 176.91133 * 25 6 5 48 48 H 1.08999 * 109.47608 * 182.40874 * 26 25 6 49 49 H 1.08999 * 109.48136 * 62.37965 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 0.8420 5 6 3.5658 1.4446 0.1245 6 6 4.0734 2.8885 0.0632 7 1 5.1628 2.8937 0.0949 8 6 3.5312 3.6655 1.2351 9 8 2.8148 3.1182 2.0463 10 7 3.8425 4.9686 1.3816 11 6 3.3158 5.7239 2.5212 12 6 1.9169 6.2454 2.1845 13 6 1.3555 7.0049 3.3907 14 7 2.3122 8.0504 3.7781 15 6 1.9110 9.3545 3.8957 16 1 1.0829 9.7199 3.3064 17 6 2.5685 10.2066 4.7722 18 7 3.3371 9.7116 5.7191 19 14 2.3625 12.0560 4.6079 20 1 1.2101 12.5008 5.4319 21 1 3.5973 12.7351 5.0762 22 1 2.1165 12.4021 3.1849 23 6 3.7078 7.6705 4.0366 24 6 4.2428 6.9035 2.8232 25 6 3.5958 3.5310 -1.2428 26 6 2.0687 3.4483 -1.3144 27 8 1.6621 2.0816 -1.2210 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8543 0.9971 1.0756 34 1 3.9988 0.8712 -0.6952 35 1 4.4157 5.4063 0.7330 36 1 3.2602 5.0729 3.3937 37 1 1.9752 6.9159 1.3273 38 1 1.2633 5.4061 1.9467 39 1 1.2116 6.3149 4.2222 40 1 0.4021 7.4619 3.1259 41 1 3.7963 10.3071 6.3318 42 1 3.7556 7.0348 4.9209 43 1 4.3088 8.5656 4.1971 44 1 5.2446 6.5327 3.0400 45 1 4.2796 7.5677 1.9598 46 1 4.0294 2.9998 -2.0900 47 1 3.9057 4.5757 -1.2705 48 1 1.7262 3.8656 -2.2612 49 1 1.6350 4.0138 -0.4896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611539684.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:03 Heat of formation + Delta-G solvation = -84.092947 kcal Electronic energy + Delta-G solvation = -27355.609370 eV Core-core repulsion = 23703.220379 eV Total energy + Delta-G solvation = -3652.388991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.76480 -38.68367 -37.23169 -34.61450 -34.12648 -33.73046 -32.05503 -30.20651 -29.88783 -29.40074 -26.13148 -24.90455 -23.80470 -22.76961 -22.22576 -21.49018 -21.07959 -19.83068 -18.97650 -17.03782 -16.56696 -16.46099 -16.38018 -15.78363 -15.16298 -14.82691 -14.49539 -14.18241 -13.87136 -13.74381 -13.69758 -13.57868 -13.35271 -13.01578 -12.93951 -12.46312 -12.32643 -12.22514 -11.98341 -11.76053 -11.49773 -11.29633 -11.15270 -11.03567 -10.89231 -10.81336 -10.72939 -10.53577 -10.44651 -10.29209 -10.06802 -9.86560 -9.74214 -9.56399 -9.20875 -8.73764 -8.48099 -6.70792 -5.82069 -3.24315 2.71130 3.30651 3.36113 3.42607 3.44722 3.69937 4.37810 4.47333 4.53521 4.58721 4.74011 4.89996 5.06209 5.10082 5.23814 5.30029 5.32438 5.38788 5.40374 5.45669 5.48158 5.55197 5.61013 5.67561 5.70483 5.79146 5.83991 5.84724 5.89176 5.96923 6.04134 6.12919 6.22854 6.25610 6.33098 6.49681 6.51667 6.56385 6.76692 6.88662 6.96103 7.19387 7.28380 7.56239 7.68894 7.77464 8.35800 8.42112 9.18236 9.81433 10.38406 11.26923 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.002981 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.911514 B = 9391.697592 C = 9558.547182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.078 3.922 4 H 0.087 0.913 5 C -0.127 4.127 6 C -0.114 4.114 7 H 0.099 0.901 8 C 0.513 3.487 9 O -0.538 6.538 10 N -0.723 5.723 11 C 0.150 3.850 12 C -0.137 4.137 13 C 0.148 3.852 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.175 3.825 24 C -0.146 4.146 25 C -0.146 4.146 26 C 0.060 3.940 27 O -0.380 6.380 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.395 0.605 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.056 0.944 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.091 0.909 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.094 0.906 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 -15.738 -14.488 21.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C 0.021 3.979 4 H 0.104 0.896 5 C -0.165 4.165 6 C -0.135 4.135 7 H 0.117 0.883 8 C 0.298 3.702 9 O -0.415 6.415 10 N -0.372 5.372 11 C 0.047 3.953 12 C -0.178 4.178 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.048 3.952 24 C -0.186 4.186 25 C -0.184 4.184 26 C -0.017 4.017 27 O -0.299 6.299 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.228 0.772 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.110 0.890 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.112 0.888 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.023 -16.117 -13.892 21.373 hybrid contribution 0.577 1.406 -0.142 1.527 sum 2.600 -14.711 -14.034 20.496 Atomic orbital electron populations 1.21710 0.95353 1.01194 1.02419 1.21505 0.96729 0.94577 1.02196 1.22437 0.93286 0.94312 0.87852 0.89560 1.21978 0.97137 0.94336 1.03037 1.21444 1.01934 0.96296 0.93872 0.88335 1.20527 0.80771 0.82310 0.86559 1.90653 1.37297 1.69240 1.44358 1.46389 1.51697 1.10325 1.28814 1.21048 0.93965 0.92466 0.87811 1.22357 0.95702 0.99133 1.00568 1.20867 0.93109 0.90790 0.93178 1.44087 1.03681 1.03572 1.80190 1.19178 1.16272 0.85335 1.17460 0.91671 1.25053 1.00757 0.98541 0.95285 1.70023 1.34126 1.33630 1.16980 0.86307 0.77180 0.85563 0.77781 1.21360 1.21557 1.20492 1.20730 0.85903 0.97927 0.90608 1.22533 0.97342 0.96232 1.02529 1.22184 0.97879 1.01611 0.96688 1.22528 0.93121 0.83773 1.02308 1.87871 1.78716 1.24185 1.39165 0.92713 0.92100 0.93034 0.91662 0.90750 0.90207 0.90811 0.77186 0.90091 0.92384 0.92900 0.96242 0.92570 0.93589 0.96166 0.89042 0.92805 0.92208 0.90025 0.90392 0.88756 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.81 37.16 0.36 -1.13 16 2 C -0.11 -1.14 5.64 -26.73 -0.15 -1.29 16 3 C 0.08 0.93 2.36 -26.69 -0.06 0.87 16 4 H 0.09 1.27 5.83 -51.93 -0.30 0.97 16 5 C -0.13 -1.32 4.56 -26.59 -0.12 -1.44 16 6 C -0.11 -1.15 3.04 -91.58 -0.28 -1.43 16 7 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 8 C 0.51 6.97 5.79 -10.98 -0.06 6.91 16 9 O -0.54 -9.27 13.53 5.56 0.08 -9.19 16 10 N -0.72 -9.60 4.96 -53.76 -0.27 -9.86 16 11 C 0.15 2.54 2.41 -67.89 -0.16 2.38 16 12 C -0.14 -2.46 5.65 -26.61 -0.15 -2.61 16 13 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 14 N -0.59 -14.70 2.99 -172.32 -0.52 -15.21 16 15 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 16 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 17 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -25.92 11.19 55.49 0.62 -25.29 16 19 Si 0.90 21.39 29.59 -169.99 -5.03 16.37 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 24 C -0.15 -2.62 5.55 -26.61 -0.15 -2.77 16 25 C -0.15 -1.27 5.56 -26.59 -0.15 -1.42 16 26 C 0.06 0.64 6.62 37.21 0.25 0.88 16 27 O -0.38 -4.67 9.94 -35.23 -0.35 -5.02 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.86 8.02 -51.93 -0.42 0.45 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.39 4.20 7.99 -40.82 -0.33 3.88 16 36 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.58 7.50 -51.93 -0.39 0.19 16 48 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.05 0.65 7.38 -51.93 -0.38 0.27 16 LS Contribution 373.13 15.07 5.62 5.62 Total: -1.00 -30.75 373.13 -9.60 -40.36 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -8.81 Total: 3.14 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -0.95 Total: -0.91 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.16 Total: -50.37 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.28 Total: -14.21 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.75 -9.60 -40.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611539684.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.736 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds