Wall clock time and date at job start Tue Mar 31 2020 10:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47104 * 2 1 4 4 H 1.09005 * 109.48134 * 55.01979 * 3 2 1 5 5 C 1.53091 * 109.48302 * 175.05219 * 3 2 1 6 6 C 1.53175 * 109.16734 * 177.59010 * 5 3 2 7 7 H 1.08990 * 109.54776 * 183.15822 * 6 5 3 8 8 C 1.50707 * 109.61336 * 62.93170 * 6 5 3 9 9 O 1.21276 * 119.99866 * 0.40405 * 8 6 5 10 10 N 1.34776 * 119.99412 * 180.40193 * 8 6 5 11 11 C 1.46510 * 119.99530 * 180.02562 * 10 8 6 12 12 C 1.53038 * 109.45909 * 275.06789 * 11 10 8 13 13 C 1.53195 * 109.31129 * 178.61346 * 12 11 10 14 14 N 1.46921 * 108.77380 * 54.63342 * 13 12 11 15 15 C 1.36944 * 120.63196 * 126.37125 * 14 13 12 16 16 H 1.08003 * 119.99521 * 331.86062 * 15 14 13 17 17 C 1.38803 * 119.99982 * 151.85803 * 15 14 13 18 18 N 1.31617 * 120.00471 * 343.07052 * 17 15 14 19 19 Si 1.86808 * 119.99730 * 163.06648 * 17 15 14 20 20 H 1.48498 * 109.46824 * 90.00302 * 19 17 15 21 21 H 1.48499 * 109.47244 * 210.00163 * 19 17 15 22 22 H 1.48503 * 109.47105 * 330.00318 * 19 17 15 23 23 C 1.46927 * 118.74462 * 306.39135 * 14 13 12 24 24 C 1.53039 * 109.45778 * 154.99849 * 11 10 8 25 25 C 1.53185 * 109.03745 * 303.02340 * 6 5 3 26 26 C 1.53095 * 109.16015 * 56.97626 * 25 6 5 27 27 O 1.42893 * 109.41861 * 302.39252 * 26 25 6 28 28 H 1.08997 * 109.47320 * 300.00142 * 1 2 3 29 29 H 1.09005 * 109.47167 * 60.00262 * 1 2 3 30 30 H 1.09004 * 109.46890 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47320 * 239.99858 * 2 1 3 32 32 H 1.09003 * 109.46674 * 119.99911 * 2 1 3 33 33 H 1.08998 * 109.52134 * 297.49989 * 5 3 2 34 34 H 1.09004 * 109.51560 * 57.68813 * 5 3 2 35 35 H 0.96996 * 120.00767 * 359.97438 * 10 8 6 36 36 H 1.09003 * 109.45421 * 35.02498 * 11 10 8 37 37 H 1.08990 * 109.49914 * 298.56520 * 12 11 10 38 38 H 1.09005 * 109.49836 * 58.66208 * 12 11 10 39 39 H 1.09004 * 109.58354 * 294.85166 * 13 12 11 40 40 H 1.08996 * 109.70555 * 174.49447 * 13 12 11 41 41 H 0.97003 * 120.00131 * 180.02562 * 18 17 15 42 42 H 1.09007 * 109.58515 * 293.82639 * 23 14 13 43 43 H 1.08995 * 109.71253 * 173.46425 * 23 14 13 44 44 H 1.08999 * 109.49921 * 301.33606 * 24 11 10 45 45 H 1.08998 * 109.49924 * 61.40589 * 24 11 10 46 46 H 1.08998 * 109.52387 * 297.07430 * 25 6 5 47 47 H 1.09004 * 109.57460 * 176.91133 * 25 6 5 48 48 H 1.08999 * 109.47608 * 182.40874 * 26 25 6 49 49 H 1.08999 * 109.48136 * 62.37965 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 0.8420 5 6 3.5658 1.4446 0.1245 6 6 4.0734 2.8885 0.0632 7 1 5.1628 2.8937 0.0949 8 6 3.5312 3.6655 1.2351 9 8 2.8148 3.1182 2.0463 10 7 3.8425 4.9686 1.3816 11 6 3.3158 5.7239 2.5212 12 6 1.9169 6.2454 2.1845 13 6 1.3555 7.0049 3.3907 14 7 2.3122 8.0504 3.7781 15 6 1.9110 9.3545 3.8957 16 1 1.0829 9.7199 3.3064 17 6 2.5685 10.2066 4.7722 18 7 3.3371 9.7116 5.7191 19 14 2.3625 12.0560 4.6079 20 1 1.2101 12.5008 5.4319 21 1 3.5973 12.7351 5.0762 22 1 2.1165 12.4021 3.1849 23 6 3.7078 7.6705 4.0366 24 6 4.2428 6.9035 2.8232 25 6 3.5958 3.5310 -1.2428 26 6 2.0687 3.4483 -1.3144 27 8 1.6621 2.0816 -1.2210 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8543 0.9971 1.0756 34 1 3.9988 0.8712 -0.6952 35 1 4.4157 5.4063 0.7330 36 1 3.2602 5.0729 3.3937 37 1 1.9752 6.9159 1.3273 38 1 1.2633 5.4061 1.9467 39 1 1.2116 6.3149 4.2222 40 1 0.4021 7.4619 3.1259 41 1 3.7963 10.3071 6.3318 42 1 3.7556 7.0348 4.9209 43 1 4.3088 8.5656 4.1971 44 1 5.2446 6.5327 3.0400 45 1 4.2796 7.5677 1.9598 46 1 4.0294 2.9998 -2.0900 47 1 3.9057 4.5757 -1.2705 48 1 1.7262 3.8656 -2.2612 49 1 1.6350 4.0138 -0.4896 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611539684.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:02 Heat of formation + Delta-G solvation = -103.315642 kcal Electronic energy + Delta-G solvation = -27356.442929 eV Core-core repulsion = 23703.220379 eV Total energy + Delta-G solvation = -3653.222550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.76737 -39.86761 -38.69640 -36.05259 -35.10868 -34.61455 -33.78839 -31.81458 -31.17767 -30.67857 -27.39625 -26.39965 -24.67503 -24.14990 -23.82567 -22.68959 -22.07234 -21.21521 -20.31701 -18.80607 -17.64316 -17.38345 -17.35564 -17.06918 -16.69458 -16.12241 -15.69699 -15.46624 -15.38983 -15.06647 -14.78969 -14.65480 -14.55998 -14.43542 -14.14006 -14.04857 -13.45428 -13.19708 -13.14143 -13.01141 -12.75136 -12.61901 -12.55385 -12.51501 -12.24945 -12.08754 -12.03583 -11.90501 -11.83805 -11.61191 -11.59594 -11.38442 -11.28074 -10.69795 -10.57566 -10.19566 -9.98375 -8.72945 -7.89814 -5.35816 1.47438 1.48529 1.58703 1.65578 2.20107 2.50589 2.87624 3.26343 3.54654 3.62536 3.71915 3.81389 3.87938 3.95330 4.02551 4.10644 4.27015 4.29770 4.30616 4.43217 4.45628 4.52906 4.61326 4.62423 4.72229 4.78564 4.82603 4.85872 4.90961 4.92747 5.00371 5.01436 5.03114 5.09066 5.12063 5.12784 5.18054 5.26130 5.31827 5.42631 5.44497 5.57553 5.62426 5.68912 6.33687 6.36811 6.62056 7.12449 7.31237 7.81570 8.34602 9.17342 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.002981 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.911514 B = 9391.697592 C = 9558.547182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C 0.077 3.923 4 H 0.050 0.950 5 C -0.125 4.125 6 C -0.108 4.108 7 H 0.129 0.871 8 C 0.509 3.491 9 O -0.578 6.578 10 N -0.711 5.711 11 C 0.163 3.837 12 C -0.120 4.120 13 C 0.144 3.856 14 N -0.609 5.609 15 C -0.266 4.266 16 H 0.067 0.933 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.268 1.268 23 C 0.179 3.821 24 C -0.128 4.128 25 C -0.138 4.138 26 C 0.052 3.948 27 O -0.391 6.391 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.413 0.587 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.004 0.996 40 H 0.056 0.944 41 H 0.251 0.749 42 H -0.008 1.008 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.112 0.888 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.858 -16.176 -17.353 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C 0.019 3.981 4 H 0.068 0.932 5 C -0.163 4.163 6 C -0.129 4.129 7 H 0.147 0.853 8 C 0.297 3.703 9 O -0.458 6.458 10 N -0.362 5.362 11 C 0.058 3.942 12 C -0.160 4.160 13 C 0.018 3.982 14 N -0.332 5.332 15 C -0.396 4.396 16 H 0.085 0.915 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.797 3.203 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.193 1.193 23 C 0.053 3.947 24 C -0.168 4.168 25 C -0.176 4.176 26 C -0.025 4.025 27 O -0.310 6.310 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.249 0.751 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.060 0.940 42 H 0.010 0.990 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.090 0.910 46 H 0.123 0.877 47 H 0.114 0.886 48 H 0.130 0.870 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.330 -16.566 -16.804 23.830 hybrid contribution 0.082 1.486 0.794 1.687 sum 3.412 -15.080 -16.010 22.257 Atomic orbital electron populations 1.21694 0.95640 1.01959 1.01254 1.21532 0.96533 0.93780 1.03092 1.22376 0.94454 0.94652 0.86590 0.93187 1.21982 0.95892 0.94936 1.03532 1.21509 1.03460 0.95323 0.92565 0.85272 1.21266 0.79862 0.82093 0.87044 1.90656 1.39011 1.70011 1.46108 1.46096 1.51796 1.10274 1.28016 1.20596 0.93304 0.91877 0.88402 1.22126 0.96281 0.98725 0.98894 1.20952 0.92989 0.90142 0.94090 1.44343 1.04827 1.03662 1.80390 1.19511 1.16267 0.86566 1.17225 0.91531 1.25825 1.00844 1.02722 0.95044 1.70184 1.35226 1.34878 1.17842 0.85257 0.76727 0.80248 0.78072 1.21392 1.21681 1.19284 1.20556 0.85246 0.96789 0.92125 1.22248 0.98242 0.96039 1.00224 1.22194 0.96014 1.02970 0.96404 1.22686 0.94847 0.82813 1.02135 1.87857 1.79293 1.24926 1.38973 0.94184 0.92923 0.91295 0.90293 0.90167 0.91026 0.88425 0.75063 0.92785 0.91443 0.92719 0.97812 0.92553 0.93973 0.99001 0.91831 0.90482 0.91025 0.87738 0.88593 0.87027 0.95691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.81 71.98 0.71 -2.21 16 2 C -0.11 -2.15 5.64 30.59 0.17 -1.97 16 3 C 0.08 1.76 2.36 30.62 0.07 1.83 16 4 H 0.05 1.53 5.83 -2.38 -0.01 1.51 16 5 C -0.13 -2.32 4.56 30.68 0.14 -2.18 16 6 C -0.11 -1.82 3.04 -11.42 -0.03 -1.86 16 7 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 8 C 0.51 13.10 5.79 87.66 0.51 13.61 16 9 O -0.58 -20.07 13.53 -3.02 -0.04 -20.11 16 10 N -0.71 -17.38 4.96 -442.39 -2.19 -19.57 16 11 C 0.16 5.42 2.41 45.02 0.11 5.53 16 12 C -0.12 -4.27 5.65 30.67 0.17 -4.10 16 13 C 0.14 6.33 6.52 86.36 0.56 6.89 16 14 N -0.61 -30.80 2.99 -699.09 -2.09 -32.89 16 15 C -0.27 -14.60 9.58 84.03 0.81 -13.79 16 16 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 17 C -0.05 -2.71 4.92 84.86 0.42 -2.30 16 18 N -0.94 -55.07 11.19 21.65 0.24 -54.83 16 19 Si 0.97 44.29 29.59 68.60 2.03 46.32 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.18 8.52 5.30 86.36 0.46 8.98 16 24 C -0.13 -4.45 5.55 30.67 0.17 -4.28 16 25 C -0.14 -1.87 5.56 30.69 0.17 -1.70 16 26 C 0.05 1.01 6.62 72.01 0.48 1.48 16 27 O -0.39 -9.06 9.94 -148.98 -1.48 -10.54 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 1.10 7.82 -2.38 -0.02 1.09 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.44 8.02 -2.39 -0.02 1.42 16 34 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.41 7.29 7.99 -92.71 -0.74 6.55 16 36 H 0.05 2.12 7.58 -2.39 -0.02 2.11 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 40 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 41 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 42 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 43 H 0.06 3.38 6.06 -2.39 -0.01 3.36 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.10 0.99 7.50 -2.38 -0.02 0.97 16 48 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.02 0.61 7.38 -2.39 -0.02 0.59 16 Total: -1.00 -69.29 373.13 1.55 -67.75 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.18 Total: 19.95 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 4.91 Total: 3.92 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -4.04 Total: -107.29 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.52 Total: -30.65 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -69.29 1.55 -67.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611539684.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.569 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds