Wall clock time and date at job start Tue Mar 31 2020 10:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47082 * 2 1 4 4 H 1.08993 * 109.48994 * 304.97497 * 3 2 1 5 5 C 1.53092 * 109.48044 * 184.94464 * 3 2 1 6 6 C 1.53171 * 109.16409 * 182.41183 * 5 3 2 7 7 H 1.08998 * 109.61567 * 297.07253 * 6 5 3 8 8 C 1.50703 * 109.54470 * 176.84664 * 6 5 3 9 9 O 1.21270 * 119.99859 * 0.44502 * 8 6 5 10 10 N 1.34781 * 119.99780 * 180.44003 * 8 6 5 11 11 C 1.46497 * 119.99443 * 179.97438 * 10 8 6 12 12 C 1.53035 * 109.46440 * 275.02776 * 11 10 8 13 13 C 1.53190 * 109.31375 * 178.60268 * 12 11 10 14 14 N 1.46923 * 108.76537 * 54.65950 * 13 12 11 15 15 C 1.36942 * 120.63333 * 126.35969 * 14 13 12 16 16 H 1.08000 * 120.00178 * 208.02777 * 15 14 13 17 17 C 1.38811 * 119.99728 * 28.02383 * 15 14 13 18 18 N 1.31625 * 120.00325 * 17.52376 * 17 15 14 19 19 Si 1.86799 * 119.99859 * 197.52422 * 17 15 14 20 20 H 1.48501 * 109.47100 * 94.07054 * 19 17 15 21 21 H 1.48498 * 109.47122 * 214.06546 * 19 17 15 22 22 H 1.48497 * 109.47417 * 334.06807 * 19 17 15 23 23 C 1.46924 * 118.73852 * 306.38284 * 14 13 12 24 24 C 1.53045 * 109.45441 * 154.97825 * 11 10 8 25 25 C 1.53179 * 109.03708 * 56.97706 * 6 5 3 26 26 C 1.53090 * 109.16462 * 303.02411 * 25 6 5 27 27 O 1.42900 * 109.41474 * 57.60765 * 26 25 6 28 28 H 1.09000 * 109.46900 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46799 * 299.99815 * 1 2 3 30 30 H 1.08995 * 109.47266 * 59.99395 * 1 2 3 31 31 H 1.09005 * 109.46755 * 240.00706 * 2 1 3 32 32 H 1.08995 * 109.47266 * 120.00605 * 2 1 3 33 33 H 1.09008 * 109.52220 * 302.31722 * 5 3 2 34 34 H 1.08999 * 109.52296 * 62.50469 * 5 3 2 35 35 H 0.96997 * 120.00099 * 0.02562 * 10 8 6 36 36 H 1.08999 * 109.46356 * 35.01008 * 11 10 8 37 37 H 1.09002 * 109.50284 * 298.57012 * 12 11 10 38 38 H 1.09007 * 109.49797 * 58.66900 * 12 11 10 39 39 H 1.09004 * 109.59875 * 294.86935 * 13 12 11 40 40 H 1.09001 * 109.70124 * 174.51015 * 13 12 11 41 41 H 0.96996 * 120.00225 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.59094 * 293.81822 * 23 14 13 43 43 H 1.09003 * 109.58743 * 173.38861 * 23 14 13 44 44 H 1.09006 * 109.49783 * 301.33507 * 24 11 10 45 45 H 1.08997 * 109.49974 * 61.40166 * 24 11 10 46 46 H 1.09005 * 109.52322 * 183.11060 * 25 6 5 47 47 H 1.09005 * 109.57345 * 62.96168 * 25 6 5 48 48 H 1.08999 * 109.47980 * 297.62335 * 26 25 6 49 49 H 1.09007 * 109.47859 * 177.58898 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6059 1.9817 -0.8419 5 6 3.5659 1.4446 -0.1244 6 6 4.0734 2.8885 -0.0630 7 1 3.6812 3.4505 -0.9106 8 6 5.5798 2.8957 -0.1069 9 8 6.1890 1.8502 -0.1882 10 7 6.2499 4.0640 -0.0559 11 6 7.7142 4.0708 -0.0980 12 6 8.2659 3.8605 1.3139 13 6 9.7967 3.8334 1.2608 14 7 10.2687 5.0607 0.6055 15 6 11.1908 5.8678 1.2169 16 1 11.2087 6.9261 1.0023 17 6 12.1023 5.3256 2.1124 18 7 12.3213 4.0278 2.1240 19 14 13.0182 6.4379 3.3012 20 1 12.2878 6.4899 4.5931 21 1 14.3850 5.9029 3.5266 22 1 13.1100 7.8052 2.7291 23 6 9.7323 5.4060 -0.7180 24 6 8.2022 5.4152 -0.6428 25 6 3.5957 3.5309 1.2429 26 6 2.0687 3.4483 1.3145 27 8 1.6621 2.0815 1.2211 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.9989 0.8711 0.6952 34 1 3.8544 0.9972 -1.0755 35 1 5.7626 4.9001 0.0094 36 1 8.0627 3.2678 -0.7475 37 1 7.9385 4.6767 1.9579 38 1 7.8991 2.9138 1.7106 39 1 10.1275 2.9647 0.6915 40 1 10.1986 3.7817 2.2727 41 1 12.9580 3.6489 2.7500 42 1 10.0579 4.6657 -1.4488 43 1 10.0896 6.3933 -1.0109 44 1 7.7900 5.5752 -1.6391 45 1 7.8748 6.2166 0.0194 46 1 3.9057 4.5756 1.2696 47 1 4.0294 3.0006 2.0907 48 1 1.6350 4.0137 0.4897 49 1 1.7261 3.8656 2.2614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611539685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:07 Heat of formation + Delta-G solvation = -87.761600 kcal Electronic energy + Delta-G solvation = -26643.699313 eV Core-core repulsion = 22991.151237 eV Total energy + Delta-G solvation = -3652.548076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.47756 -39.02340 -37.32036 -34.53493 -34.25486 -33.83638 -32.05103 -30.10817 -30.03310 -29.46682 -26.38709 -24.88114 -23.89211 -22.49315 -22.24530 -21.58458 -20.84433 -19.89375 -19.19784 -17.25946 -16.77531 -16.60633 -16.18026 -15.62260 -15.18374 -14.87549 -14.70048 -14.20076 -13.98078 -13.91236 -13.64104 -13.56204 -13.50286 -13.16088 -12.96885 -12.49037 -12.40199 -12.10599 -12.03879 -11.58699 -11.51063 -11.40378 -11.18514 -11.13150 -10.95124 -10.87096 -10.75356 -10.58941 -10.40531 -10.23224 -10.08901 -9.96164 -9.76847 -9.70596 -9.32317 -8.71118 -8.42957 -6.69926 -5.79305 -3.22440 2.76828 3.30871 3.37716 3.44133 3.45716 3.52032 4.33048 4.48659 4.50510 4.53041 4.63882 4.82042 4.83736 5.04362 5.08867 5.12823 5.18756 5.31458 5.36265 5.40101 5.43255 5.44534 5.47649 5.61552 5.62262 5.70251 5.75476 5.81398 5.84831 5.88956 6.03782 6.06680 6.12204 6.22481 6.34964 6.42334 6.59678 6.63787 6.76104 6.90345 6.93529 6.98819 7.36175 7.65914 7.72178 7.78969 8.40850 8.44337 9.19976 9.83339 10.40102 11.29235 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029521 B = 0.002572 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.248594 B =10885.817648 C =10962.743041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.091 3.909 4 H 0.057 0.943 5 C -0.129 4.129 6 C -0.109 4.109 7 H 0.094 0.906 8 C 0.514 3.486 9 O -0.538 6.538 10 N -0.724 5.724 11 C 0.150 3.850 12 C -0.145 4.145 13 C 0.173 3.827 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.148 3.852 24 C -0.138 4.138 25 C -0.148 4.148 26 C 0.065 3.935 27 O -0.377 6.377 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.393 0.607 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.020 0.980 40 H 0.089 0.911 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.051 0.949 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.482 -1.762 -5.122 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.075 0.925 5 C -0.167 4.167 6 C -0.131 4.131 7 H 0.112 0.888 8 C 0.300 3.700 9 O -0.414 6.414 10 N -0.374 5.374 11 C 0.047 3.953 12 C -0.185 4.185 13 C 0.047 3.953 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.021 3.979 24 C -0.178 4.178 25 C -0.186 4.186 26 C -0.012 4.012 27 O -0.296 6.296 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.227 0.773 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.038 0.962 40 H 0.107 0.893 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -22.979 -2.704 -4.946 23.660 hybrid contribution 0.515 1.163 0.474 1.357 sum -22.464 -1.541 -4.473 22.956 Atomic orbital electron populations 1.21719 0.95300 1.01493 1.02143 1.21545 0.96535 0.94289 1.03059 1.22191 0.93390 0.94175 0.86935 0.92486 1.22042 0.95143 0.95117 1.04445 1.21386 0.93004 0.98995 0.99695 0.88792 1.20450 0.89365 0.84041 0.76166 1.90709 1.69984 1.31619 1.49115 1.46342 1.08333 1.08193 1.74529 1.21039 0.77176 0.98654 0.98446 1.22542 1.00713 1.00282 0.95001 1.20755 0.87015 0.87692 0.99846 1.44108 1.47188 1.25761 1.14480 1.19188 1.08161 0.89871 1.21206 0.91609 1.25070 0.97080 0.95838 1.01676 1.70046 1.36349 1.10438 1.37636 0.86272 0.78916 0.80053 0.81498 1.21483 1.21763 1.20388 1.20841 0.89595 0.98724 0.88733 1.22335 1.00067 0.95950 0.99479 1.22207 0.97342 1.01683 0.97353 1.22536 0.93064 0.83323 1.02253 1.87934 1.78429 1.24543 1.38731 0.92800 0.91961 0.93049 0.90503 0.90917 0.90009 0.90214 0.77328 0.90124 0.92728 0.92949 0.96171 0.89293 0.93569 0.96216 0.92335 0.92708 0.91898 0.90286 0.90215 0.93116 0.88528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.81 37.16 0.36 -0.71 16 2 C -0.12 -0.95 5.64 -26.73 -0.15 -1.10 16 3 C 0.09 0.82 2.64 -26.68 -0.07 0.74 16 4 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 5 C -0.13 -1.38 4.01 -26.60 -0.11 -1.48 16 6 C -0.11 -1.12 2.62 -91.59 -0.24 -1.36 16 7 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 8 C 0.51 7.40 7.12 -10.98 -0.08 7.32 16 9 O -0.54 -10.12 15.63 5.57 0.09 -10.03 16 10 N -0.72 -9.88 4.98 -53.77 -0.27 -10.15 16 11 C 0.15 2.60 2.42 -67.89 -0.16 2.44 16 12 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 13 C 0.17 4.25 5.31 -3.71 -0.02 4.23 16 14 N -0.59 -14.82 2.99 -172.32 -0.52 -15.33 16 15 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 16 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.06 4.90 -17.43 -0.09 -0.02 16 18 N -0.90 -26.43 11.22 55.49 0.62 -25.81 16 19 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 24 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 25 C -0.15 -1.32 5.29 -26.59 -0.14 -1.46 16 26 C 0.07 0.51 6.84 37.20 0.25 0.77 16 27 O -0.38 -3.80 9.94 -35.23 -0.35 -4.15 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.50 7.82 -51.92 -0.41 0.09 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.04 8.03 -51.92 -0.42 0.62 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.39 4.17 8.09 -40.82 -0.33 3.84 16 36 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 41 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.08 0.58 7.67 -51.93 -0.40 0.19 16 47 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -32.05 379.24 -9.63 -41.67 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.99 Total: 1.63 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -0.90 Total: -0.20 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.16 Total: -51.29 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.26 Total: -14.18 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.05 -9.63 -41.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611539685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.089 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds