Wall clock time and date at job start Tue Mar 31 2020 10:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47082 * 2 1 4 4 H 1.08993 * 109.48994 * 304.97497 * 3 2 1 5 5 C 1.53092 * 109.48044 * 184.94464 * 3 2 1 6 6 C 1.53171 * 109.16409 * 182.41183 * 5 3 2 7 7 H 1.08998 * 109.61567 * 297.07253 * 6 5 3 8 8 C 1.50703 * 109.54470 * 176.84664 * 6 5 3 9 9 O 1.21270 * 119.99859 * 0.44502 * 8 6 5 10 10 N 1.34781 * 119.99780 * 180.44003 * 8 6 5 11 11 C 1.46497 * 119.99443 * 179.97438 * 10 8 6 12 12 C 1.53035 * 109.46440 * 275.02776 * 11 10 8 13 13 C 1.53190 * 109.31375 * 178.60268 * 12 11 10 14 14 N 1.46923 * 108.76537 * 54.65950 * 13 12 11 15 15 C 1.36942 * 120.63333 * 126.35969 * 14 13 12 16 16 H 1.08000 * 120.00178 * 208.02777 * 15 14 13 17 17 C 1.38811 * 119.99728 * 28.02383 * 15 14 13 18 18 N 1.31625 * 120.00325 * 17.52376 * 17 15 14 19 19 Si 1.86799 * 119.99859 * 197.52422 * 17 15 14 20 20 H 1.48501 * 109.47100 * 94.07054 * 19 17 15 21 21 H 1.48498 * 109.47122 * 214.06546 * 19 17 15 22 22 H 1.48497 * 109.47417 * 334.06807 * 19 17 15 23 23 C 1.46924 * 118.73852 * 306.38284 * 14 13 12 24 24 C 1.53045 * 109.45441 * 154.97825 * 11 10 8 25 25 C 1.53179 * 109.03708 * 56.97706 * 6 5 3 26 26 C 1.53090 * 109.16462 * 303.02411 * 25 6 5 27 27 O 1.42900 * 109.41474 * 57.60765 * 26 25 6 28 28 H 1.09000 * 109.46900 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46799 * 299.99815 * 1 2 3 30 30 H 1.08995 * 109.47266 * 59.99395 * 1 2 3 31 31 H 1.09005 * 109.46755 * 240.00706 * 2 1 3 32 32 H 1.08995 * 109.47266 * 120.00605 * 2 1 3 33 33 H 1.09008 * 109.52220 * 302.31722 * 5 3 2 34 34 H 1.08999 * 109.52296 * 62.50469 * 5 3 2 35 35 H 0.96997 * 120.00099 * 0.02562 * 10 8 6 36 36 H 1.08999 * 109.46356 * 35.01008 * 11 10 8 37 37 H 1.09002 * 109.50284 * 298.57012 * 12 11 10 38 38 H 1.09007 * 109.49797 * 58.66900 * 12 11 10 39 39 H 1.09004 * 109.59875 * 294.86935 * 13 12 11 40 40 H 1.09001 * 109.70124 * 174.51015 * 13 12 11 41 41 H 0.96996 * 120.00225 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.59094 * 293.81822 * 23 14 13 43 43 H 1.09003 * 109.58743 * 173.38861 * 23 14 13 44 44 H 1.09006 * 109.49783 * 301.33507 * 24 11 10 45 45 H 1.08997 * 109.49974 * 61.40166 * 24 11 10 46 46 H 1.09005 * 109.52322 * 183.11060 * 25 6 5 47 47 H 1.09005 * 109.57345 * 62.96168 * 25 6 5 48 48 H 1.08999 * 109.47980 * 297.62335 * 26 25 6 49 49 H 1.09007 * 109.47859 * 177.58898 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6059 1.9817 -0.8419 5 6 3.5659 1.4446 -0.1244 6 6 4.0734 2.8885 -0.0630 7 1 3.6812 3.4505 -0.9106 8 6 5.5798 2.8957 -0.1069 9 8 6.1890 1.8502 -0.1882 10 7 6.2499 4.0640 -0.0559 11 6 7.7142 4.0708 -0.0980 12 6 8.2659 3.8605 1.3139 13 6 9.7967 3.8334 1.2608 14 7 10.2687 5.0607 0.6055 15 6 11.1908 5.8678 1.2169 16 1 11.2087 6.9261 1.0023 17 6 12.1023 5.3256 2.1124 18 7 12.3213 4.0278 2.1240 19 14 13.0182 6.4379 3.3012 20 1 12.2878 6.4899 4.5931 21 1 14.3850 5.9029 3.5266 22 1 13.1100 7.8052 2.7291 23 6 9.7323 5.4060 -0.7180 24 6 8.2022 5.4152 -0.6428 25 6 3.5957 3.5309 1.2429 26 6 2.0687 3.4483 1.3145 27 8 1.6621 2.0815 1.2211 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.9989 0.8711 0.6952 34 1 3.8544 0.9972 -1.0755 35 1 5.7626 4.9001 0.0094 36 1 8.0627 3.2678 -0.7475 37 1 7.9385 4.6767 1.9579 38 1 7.8991 2.9138 1.7106 39 1 10.1275 2.9647 0.6915 40 1 10.1986 3.7817 2.2727 41 1 12.9580 3.6489 2.7500 42 1 10.0579 4.6657 -1.4488 43 1 10.0896 6.3933 -1.0109 44 1 7.7900 5.5752 -1.6391 45 1 7.8748 6.2166 0.0194 46 1 3.9057 4.5756 1.2696 47 1 4.0294 3.0006 2.0907 48 1 1.6350 4.0137 0.4897 49 1 1.7261 3.8656 2.2614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611539685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:06 Heat of formation + Delta-G solvation = -108.404350 kcal Electronic energy + Delta-G solvation = -26644.594450 eV Core-core repulsion = 22991.151237 eV Total energy + Delta-G solvation = -3653.443213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.49549 -40.05236 -38.87808 -36.05105 -35.07154 -34.67875 -33.79386 -31.78404 -31.21930 -30.70976 -27.54169 -26.43296 -24.69338 -23.94743 -23.77330 -22.66823 -21.70204 -21.20795 -20.60032 -18.87122 -18.04978 -17.43383 -17.28728 -16.86095 -16.58308 -16.11215 -15.68573 -15.52136 -15.38331 -15.07179 -14.90695 -14.63641 -14.55778 -14.52989 -14.17066 -14.06594 -13.75891 -13.21442 -13.05751 -12.76210 -12.71404 -12.64367 -12.62376 -12.35288 -12.15242 -12.10113 -12.04154 -11.88286 -11.79238 -11.60532 -11.55882 -11.39315 -11.32438 -10.86510 -10.60435 -10.34714 -10.00936 -8.74245 -7.89393 -5.35929 1.46497 1.47806 1.57391 1.62797 2.17201 2.50140 2.88216 3.26227 3.54964 3.59081 3.66720 3.77106 3.86012 3.94265 4.06220 4.14349 4.18393 4.30939 4.38522 4.42137 4.44749 4.46000 4.53586 4.63797 4.72557 4.74951 4.77923 4.82306 4.87097 4.91973 5.02662 5.04847 5.08981 5.10969 5.13437 5.14496 5.20494 5.29135 5.33043 5.43192 5.47421 5.55385 5.62117 5.66709 6.34961 6.36405 6.60619 7.10964 7.30093 7.81997 8.34902 9.17768 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.029521 B = 0.002572 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.248594 B =10885.817648 C =10962.743041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.096 3.904 4 H 0.078 0.922 5 C -0.128 4.128 6 C -0.099 4.099 7 H 0.129 0.871 8 C 0.511 3.489 9 O -0.588 6.588 10 N -0.708 5.708 11 C 0.161 3.839 12 C -0.128 4.128 13 C 0.182 3.818 14 N -0.609 5.609 15 C -0.260 4.260 16 H 0.075 0.925 17 C -0.056 4.056 18 N -0.940 5.940 19 Si 0.970 3.030 20 H -0.287 1.287 21 H -0.298 1.298 22 H -0.262 1.262 23 C 0.140 3.860 24 C -0.120 4.120 25 C -0.144 4.144 26 C 0.063 3.937 27 O -0.396 6.396 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.415 0.585 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.040 0.960 39 H -0.013 1.013 40 H 0.054 0.946 41 H 0.249 0.751 42 H 0.010 0.990 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.053 0.947 48 H 0.076 0.924 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.223 0.907 -6.101 26.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C 0.038 3.962 4 H 0.096 0.904 5 C -0.167 4.167 6 C -0.120 4.120 7 H 0.147 0.853 8 C 0.299 3.701 9 O -0.468 6.468 10 N -0.359 5.359 11 C 0.056 3.944 12 C -0.169 4.169 13 C 0.056 3.944 14 N -0.333 5.333 15 C -0.390 4.390 16 H 0.093 0.907 17 C -0.251 4.251 18 N -0.586 5.586 19 Si 0.798 3.202 20 H -0.214 1.214 21 H -0.225 1.225 22 H -0.187 1.187 23 C 0.014 3.986 24 C -0.160 4.160 25 C -0.182 4.182 26 C -0.013 4.013 27 O -0.316 6.316 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.252 0.748 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.059 0.941 39 H 0.005 0.995 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.028 0.972 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.095 0.905 46 H 0.120 0.880 47 H 0.072 0.928 48 H 0.094 0.906 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -25.774 0.023 -5.946 26.451 hybrid contribution 1.384 0.287 0.732 1.592 sum -24.389 0.310 -5.214 24.942 Atomic orbital electron populations 1.21678 0.94335 1.02011 1.02164 1.21588 0.97354 0.94036 1.02784 1.22205 0.91819 0.94786 0.87370 0.90401 1.22017 0.96590 0.95125 1.02933 1.21408 0.89414 0.99337 1.01885 0.85319 1.21253 0.91138 0.83171 0.74587 1.90700 1.71382 1.33502 1.51252 1.46038 1.06604 1.09264 1.74034 1.20636 0.79432 0.98592 0.95743 1.22278 0.97283 0.99970 0.97336 1.20456 0.89908 0.86820 0.97255 1.44359 1.47278 1.25325 1.16336 1.19588 1.07922 0.90565 1.20944 0.90720 1.25903 0.98525 0.97079 1.03623 1.70220 1.37424 1.12379 1.38545 0.85208 0.77017 0.78826 0.79143 1.21362 1.22493 1.18670 1.21062 0.92466 0.98771 0.86282 1.22129 0.96610 0.95307 1.01921 1.22221 0.98289 1.02404 0.95327 1.22712 0.91989 0.82611 1.04021 1.87925 1.78492 1.25861 1.39313 0.92121 0.92892 0.91957 0.89642 0.92455 0.93146 0.90657 0.74811 0.92823 0.91899 0.94093 0.99539 0.92763 0.94195 0.97205 0.91279 0.88940 0.90470 0.87973 0.92820 0.90626 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.81 71.98 0.71 -1.14 16 2 C -0.12 -1.84 5.64 30.60 0.17 -1.67 16 3 C 0.10 1.54 2.64 30.63 0.08 1.62 16 4 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 5 C -0.13 -2.64 4.01 30.68 0.12 -2.52 16 6 C -0.10 -1.81 2.62 -11.42 -0.03 -1.84 16 7 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 8 C 0.51 14.09 7.12 87.66 0.62 14.72 16 9 O -0.59 -22.63 15.63 -3.00 -0.05 -22.68 16 10 N -0.71 -17.62 4.98 -442.41 -2.20 -19.83 16 11 C 0.16 5.40 2.42 45.02 0.11 5.51 16 12 C -0.13 -5.21 5.65 30.67 0.17 -5.03 16 13 C 0.18 9.33 5.31 86.36 0.46 9.79 16 14 N -0.61 -30.77 2.99 -699.09 -2.09 -32.86 16 15 C -0.26 -14.22 9.58 84.03 0.81 -13.41 16 16 H 0.08 3.88 7.89 -2.91 -0.02 3.86 16 17 C -0.06 -3.18 4.90 84.86 0.42 -2.77 16 18 N -0.94 -57.33 11.22 21.65 0.24 -57.09 16 19 Si 0.97 45.06 29.59 68.60 2.03 47.09 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 23 C 0.14 5.60 6.52 86.37 0.56 6.16 16 24 C -0.12 -3.60 5.55 30.68 0.17 -3.43 16 25 C -0.14 -2.20 5.29 30.68 0.16 -2.04 16 26 C 0.06 0.79 6.84 72.01 0.49 1.28 16 27 O -0.40 -7.20 9.94 -148.98 -1.48 -8.68 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.78 7.82 -2.38 -0.02 0.76 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.05 1.34 8.03 -2.38 -0.02 1.32 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.41 6.99 8.09 -92.71 -0.75 6.24 16 36 H 0.05 2.13 7.58 -2.39 -0.02 2.12 16 37 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 39 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 40 H 0.05 3.13 6.06 -2.39 -0.01 3.12 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 44 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.10 1.08 7.67 -2.38 -0.02 1.06 16 47 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.11 1.11 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -73.63 379.24 1.63 -72.00 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.16 Total: 16.81 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.03 Total: 5.24 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -4.05 Total: -109.78 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -1.53 Total: -31.36 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.63 1.63 -72.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611539685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.406 kcal (2) G-P(sol) polarization free energy of solvation -73.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds