Wall clock time and date at job start Tue Mar 31 2020 10:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47238 * 2 1 4 4 H 1.09001 * 109.49353 * 305.03268 * 3 2 1 5 5 O 1.42902 * 109.48046 * 65.06181 * 3 2 1 6 6 C 1.42905 * 114.10212 * 181.13947 * 5 3 2 7 7 C 1.53093 * 109.41294 * 298.84220 * 6 5 3 8 8 C 1.53173 * 109.16464 * 57.60515 * 7 6 5 9 9 C 1.53091 * 109.48139 * 185.00323 * 3 2 1 10 10 H 1.09001 * 109.52134 * 302.37765 * 9 3 2 11 11 C 1.50700 * 109.52287 * 62.50390 * 9 3 2 12 12 O 1.21278 * 119.99776 * 0.02562 * 11 9 3 13 13 N 1.34781 * 119.99872 * 180.02562 * 11 9 3 14 14 C 1.46491 * 119.99706 * 180.02562 * 13 11 9 15 15 C 1.53038 * 109.46168 * 275.02282 * 14 13 11 16 16 C 1.53197 * 109.31344 * 178.60502 * 15 14 13 17 17 N 1.46921 * 108.76714 * 54.65644 * 16 15 14 18 18 C 1.36937 * 120.63178 * 126.40766 * 17 16 15 19 19 H 1.07999 * 119.99618 * 331.82409 * 18 17 16 20 20 C 1.38815 * 119.99941 * 151.82461 * 18 17 16 21 21 N 1.31616 * 120.00037 * 343.07307 * 20 18 17 22 22 Si 1.86795 * 119.99790 * 163.07250 * 20 18 17 23 23 H 1.48500 * 109.47177 * 89.99657 * 22 20 18 24 24 H 1.48500 * 109.47340 * 210.00128 * 22 20 18 25 25 H 1.48502 * 109.47325 * 329.99963 * 22 20 18 26 26 C 1.46923 * 118.73617 * 306.38306 * 17 16 15 27 27 C 1.53051 * 109.46105 * 154.96967 * 14 13 11 28 28 H 1.09001 * 109.47394 * 59.99211 * 1 2 3 29 29 H 1.08988 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46813 * 300.00106 * 1 2 3 31 31 H 1.09000 * 109.46720 * 240.00440 * 2 1 3 32 32 H 1.08990 * 109.46994 * 120.00712 * 2 1 3 33 33 H 1.09000 * 109.48420 * 178.85992 * 6 5 3 34 34 H 1.08997 * 109.47943 * 58.81896 * 6 5 3 35 35 H 1.09001 * 109.52079 * 297.70290 * 7 6 5 36 36 H 1.08995 * 109.57570 * 177.54621 * 7 6 5 37 37 H 1.09002 * 109.54396 * 183.15248 * 8 7 6 38 38 H 1.09002 * 109.54277 * 62.88851 * 8 7 6 39 39 H 0.97003 * 120.00143 * 359.97438 * 13 11 9 40 40 H 1.09004 * 109.46587 * 34.99795 * 14 13 11 41 41 H 1.09002 * 109.49612 * 298.56453 * 15 14 13 42 42 H 1.08999 * 109.49659 * 58.66592 * 15 14 13 43 43 H 1.09003 * 109.59382 * 294.86237 * 16 15 14 44 44 H 1.08997 * 109.69883 * 174.50634 * 16 15 14 45 45 H 0.96996 * 119.99870 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.59126 * 293.82064 * 26 17 16 47 47 H 1.09009 * 109.70645 * 173.46616 * 26 17 16 48 48 H 1.09004 * 109.49183 * 301.33733 * 27 14 13 49 49 H 1.08995 * 109.49647 * 61.42961 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6052 1.9820 -0.8414 5 8 1.6634 2.0811 1.2216 6 6 2.0701 3.4478 1.3152 7 6 3.5971 3.5304 1.2421 8 6 4.0735 2.8884 -0.0644 9 6 3.5658 1.4445 -0.1259 10 1 3.9995 0.8699 0.6925 11 6 3.9634 0.8263 -1.4415 12 8 3.1110 0.4238 -2.2045 13 7 5.2663 0.7209 -1.7700 14 6 5.6527 0.1205 -3.0492 15 6 5.7179 -1.4011 -2.8992 16 6 6.0883 -2.0277 -4.2472 17 7 7.3345 -1.4150 -4.7268 18 6 8.4046 -2.1938 -5.0785 19 1 8.5455 -3.1590 -4.6149 20 6 9.3082 -1.7426 -6.0308 21 7 8.9809 -0.7494 -6.8300 22 14 10.9885 -2.5451 -6.1780 23 1 10.9159 -3.6726 -7.1417 24 1 11.9744 -1.5446 -6.6600 25 1 11.4112 -3.0561 -4.8493 26 6 7.4106 0.0491 -4.8224 27 6 7.0253 0.6525 -3.4681 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8898 33 1 1.7284 3.8648 2.2625 34 1 1.6357 4.0136 0.4910 35 1 4.0315 2.9988 2.0887 36 1 3.9080 4.5747 1.2694 37 1 5.1630 2.8936 -0.0972 38 1 3.6793 3.4499 -0.9115 39 1 5.9480 1.0432 -1.1599 40 1 4.9156 0.3792 -3.8093 41 1 6.4728 -1.6615 -2.1572 42 1 4.7465 -1.7770 -2.5781 43 1 5.2904 -1.8447 -4.9669 44 1 6.2319 -3.1014 -4.1262 45 1 9.6121 -0.4344 -7.4957 46 1 6.7207 0.4017 -5.5892 47 1 8.4268 0.3483 -5.0799 48 1 6.9844 1.7385 -3.5520 49 1 7.7676 0.3726 -2.7207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617451072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:31 Heat of formation + Delta-G solvation = -84.361227 kcal Electronic energy + Delta-G solvation = -27074.955374 eV Core-core repulsion = 23422.554749 eV Total energy + Delta-G solvation = -3652.400625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.65913 -38.89164 -37.29992 -34.69767 -34.01730 -33.75979 -32.09284 -30.47114 -30.00862 -29.22440 -25.56839 -25.41427 -24.22531 -22.33744 -22.01686 -21.41004 -20.94087 -20.03850 -19.23786 -17.47763 -16.86321 -16.47958 -15.93985 -15.53463 -15.21634 -14.86598 -14.62116 -14.43027 -13.91598 -13.79798 -13.59224 -13.48959 -13.44257 -13.13212 -12.85550 -12.56571 -12.39949 -12.34291 -11.87324 -11.49286 -11.48759 -11.43944 -11.15755 -11.11047 -10.87892 -10.85131 -10.72428 -10.51257 -10.43673 -10.28893 -10.06026 -9.83051 -9.76592 -9.65447 -9.33406 -8.72965 -8.47500 -6.70179 -5.81589 -3.23704 2.70597 3.21531 3.35960 3.42925 3.45125 3.67822 4.34029 4.45333 4.47855 4.49225 4.64311 4.88192 4.98420 5.03589 5.19304 5.20953 5.31465 5.36191 5.40310 5.42028 5.48307 5.52647 5.54236 5.57418 5.62863 5.69650 5.84984 5.85960 5.91919 6.03264 6.05334 6.16063 6.23952 6.29151 6.40196 6.50338 6.53350 6.57237 6.77810 6.89531 6.97304 7.02899 7.29015 7.56594 7.69044 7.78001 8.35572 8.42679 9.18808 9.82030 10.39076 11.27418 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.028025 B = 0.002870 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.869569 B = 9752.890957 C =10342.954276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.114 3.886 4 H 0.066 0.934 5 O -0.376 6.376 6 C 0.058 3.942 7 C -0.154 4.154 8 C -0.114 4.114 9 C -0.141 4.141 10 H 0.103 0.897 11 C 0.518 3.482 12 O -0.537 6.537 13 N -0.721 5.721 14 C 0.150 3.850 15 C -0.138 4.138 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.253 4.253 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.175 3.825 27 C -0.146 4.146 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.395 0.605 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.056 0.944 45 H 0.254 0.746 46 H 0.020 0.980 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 8.988 16.954 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C 0.056 3.944 4 H 0.084 0.916 5 O -0.295 6.295 6 C -0.019 4.019 7 C -0.192 4.192 8 C -0.152 4.152 9 C -0.162 4.162 10 H 0.121 0.879 11 C 0.304 3.696 12 O -0.415 6.415 13 N -0.371 5.371 14 C 0.047 3.953 15 C -0.179 4.179 16 C 0.021 3.979 17 N -0.315 5.315 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.048 3.952 27 C -0.186 4.186 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.228 0.772 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.094 8.658 16.388 22.131 hybrid contribution 1.524 0.028 0.015 1.525 sum -10.569 8.686 16.403 21.359 Atomic orbital electron populations 1.21656 0.95430 1.01337 1.01752 1.21769 0.96743 0.93904 1.03734 1.21863 0.90672 0.95079 0.86757 0.91604 1.87953 1.78276 1.24366 1.38912 1.22573 0.93679 0.83586 1.02051 1.22194 0.97142 1.01713 0.98124 1.21589 1.01422 0.93744 0.98439 1.22029 0.99207 0.97950 0.97060 0.87931 1.20293 0.82910 0.78701 0.87726 1.90665 1.49702 1.49113 1.51972 1.46367 1.06871 1.62011 1.21824 1.21055 0.97283 0.93090 0.83863 1.22368 1.00213 0.94790 1.00492 1.20872 0.89163 0.96226 0.91686 1.44087 1.10040 1.01359 1.76059 1.19179 1.01047 1.01584 1.16404 0.91673 1.25055 1.00018 0.99039 0.95550 1.70022 1.34612 1.29732 1.20401 0.86304 0.84177 0.78524 0.77810 1.21366 1.21566 1.20501 1.20728 1.01963 0.82963 0.89518 1.22536 0.94640 0.99075 1.02383 0.92927 0.92921 0.92517 0.88134 0.91973 0.88867 0.93199 0.90784 0.90488 0.90724 0.91133 0.77160 0.90034 0.92374 0.92741 0.96210 0.92567 0.93598 0.96155 0.89055 0.92817 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.81 37.16 0.36 -1.18 16 2 C -0.12 -1.47 5.40 -26.73 -0.14 -1.62 16 3 C 0.11 1.30 1.78 -26.69 -0.05 1.26 16 4 H 0.07 0.83 8.04 -51.93 -0.42 0.41 16 5 O -0.38 -4.06 9.94 -35.23 -0.35 -4.41 16 6 C 0.06 0.46 6.84 37.21 0.25 0.72 16 7 C -0.15 -1.09 6.14 -26.59 -0.16 -1.25 16 8 C -0.11 -0.98 5.19 -26.55 -0.14 -1.11 16 9 C -0.14 -1.49 2.23 -91.63 -0.20 -1.69 16 10 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 11 C 0.52 7.11 6.80 -10.98 -0.07 7.03 16 12 O -0.54 -9.22 13.51 5.56 0.08 -9.14 16 13 N -0.72 -9.67 4.99 -53.77 -0.27 -9.94 16 14 C 0.15 2.55 2.42 -67.89 -0.16 2.39 16 15 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 16 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 17 N -0.59 -14.72 2.99 -172.32 -0.52 -15.23 16 18 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 19 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 20 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 21 N -0.90 -25.92 11.19 55.49 0.62 -25.30 16 22 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 27 C -0.15 -2.63 5.55 -26.61 -0.15 -2.77 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.51 8.14 -51.94 -0.42 0.09 16 30 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 31 H 0.10 1.40 5.65 -51.93 -0.29 1.10 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.56 7.69 -51.93 -0.40 0.16 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.39 4.29 8.11 -40.82 -0.33 3.96 16 40 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 2.36 6.07 -51.92 -0.31 2.05 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -30.50 374.87 -9.56 -40.06 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.86 Total: 2.68 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.89 Total: -0.75 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.16 Total: -50.47 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.28 Total: -13.56 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.50 -9.56 -40.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617451072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.300 kcal (2) G-P(sol) polarization free energy of solvation -30.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds