Wall clock time and date at job start Tue Mar 31 2020 10:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47238 * 2 1 4 4 H 1.09001 * 109.49353 * 305.03268 * 3 2 1 5 5 O 1.42902 * 109.48046 * 65.06181 * 3 2 1 6 6 C 1.42905 * 114.10212 * 181.13947 * 5 3 2 7 7 C 1.53093 * 109.41294 * 298.84220 * 6 5 3 8 8 C 1.53173 * 109.16464 * 57.60515 * 7 6 5 9 9 C 1.53091 * 109.48139 * 185.00323 * 3 2 1 10 10 H 1.09001 * 109.52134 * 302.37765 * 9 3 2 11 11 C 1.50700 * 109.52287 * 62.50390 * 9 3 2 12 12 O 1.21278 * 119.99776 * 0.02562 * 11 9 3 13 13 N 1.34781 * 119.99872 * 180.02562 * 11 9 3 14 14 C 1.46491 * 119.99706 * 180.02562 * 13 11 9 15 15 C 1.53038 * 109.46168 * 275.02282 * 14 13 11 16 16 C 1.53197 * 109.31344 * 178.60502 * 15 14 13 17 17 N 1.46921 * 108.76714 * 54.65644 * 16 15 14 18 18 C 1.36937 * 120.63178 * 126.40766 * 17 16 15 19 19 H 1.07999 * 119.99618 * 331.82409 * 18 17 16 20 20 C 1.38815 * 119.99941 * 151.82461 * 18 17 16 21 21 N 1.31616 * 120.00037 * 343.07307 * 20 18 17 22 22 Si 1.86795 * 119.99790 * 163.07250 * 20 18 17 23 23 H 1.48500 * 109.47177 * 89.99657 * 22 20 18 24 24 H 1.48500 * 109.47340 * 210.00128 * 22 20 18 25 25 H 1.48502 * 109.47325 * 329.99963 * 22 20 18 26 26 C 1.46923 * 118.73617 * 306.38306 * 17 16 15 27 27 C 1.53051 * 109.46105 * 154.96967 * 14 13 11 28 28 H 1.09001 * 109.47394 * 59.99211 * 1 2 3 29 29 H 1.08988 * 109.47338 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46813 * 300.00106 * 1 2 3 31 31 H 1.09000 * 109.46720 * 240.00440 * 2 1 3 32 32 H 1.08990 * 109.46994 * 120.00712 * 2 1 3 33 33 H 1.09000 * 109.48420 * 178.85992 * 6 5 3 34 34 H 1.08997 * 109.47943 * 58.81896 * 6 5 3 35 35 H 1.09001 * 109.52079 * 297.70290 * 7 6 5 36 36 H 1.08995 * 109.57570 * 177.54621 * 7 6 5 37 37 H 1.09002 * 109.54396 * 183.15248 * 8 7 6 38 38 H 1.09002 * 109.54277 * 62.88851 * 8 7 6 39 39 H 0.97003 * 120.00143 * 359.97438 * 13 11 9 40 40 H 1.09004 * 109.46587 * 34.99795 * 14 13 11 41 41 H 1.09002 * 109.49612 * 298.56453 * 15 14 13 42 42 H 1.08999 * 109.49659 * 58.66592 * 15 14 13 43 43 H 1.09003 * 109.59382 * 294.86237 * 16 15 14 44 44 H 1.08997 * 109.69883 * 174.50634 * 16 15 14 45 45 H 0.96996 * 119.99870 * 180.02562 * 21 20 18 46 46 H 1.09004 * 109.59126 * 293.82064 * 26 17 16 47 47 H 1.09009 * 109.70645 * 173.46616 * 26 17 16 48 48 H 1.09004 * 109.49183 * 301.33733 * 27 14 13 49 49 H 1.08995 * 109.49647 * 61.42961 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6052 1.9820 -0.8414 5 8 1.6634 2.0811 1.2216 6 6 2.0701 3.4478 1.3152 7 6 3.5971 3.5304 1.2421 8 6 4.0735 2.8884 -0.0644 9 6 3.5658 1.4445 -0.1259 10 1 3.9995 0.8699 0.6925 11 6 3.9634 0.8263 -1.4415 12 8 3.1110 0.4238 -2.2045 13 7 5.2663 0.7209 -1.7700 14 6 5.6527 0.1205 -3.0492 15 6 5.7179 -1.4011 -2.8992 16 6 6.0883 -2.0277 -4.2472 17 7 7.3345 -1.4150 -4.7268 18 6 8.4046 -2.1938 -5.0785 19 1 8.5455 -3.1590 -4.6149 20 6 9.3082 -1.7426 -6.0308 21 7 8.9809 -0.7494 -6.8300 22 14 10.9885 -2.5451 -6.1780 23 1 10.9159 -3.6726 -7.1417 24 1 11.9744 -1.5446 -6.6600 25 1 11.4112 -3.0561 -4.8493 26 6 7.4106 0.0491 -4.8224 27 6 7.0253 0.6525 -3.4681 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3633 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8898 33 1 1.7284 3.8648 2.2625 34 1 1.6357 4.0136 0.4910 35 1 4.0315 2.9988 2.0887 36 1 3.9080 4.5747 1.2694 37 1 5.1630 2.8936 -0.0972 38 1 3.6793 3.4499 -0.9115 39 1 5.9480 1.0432 -1.1599 40 1 4.9156 0.3792 -3.8093 41 1 6.4728 -1.6615 -2.1572 42 1 4.7465 -1.7770 -2.5781 43 1 5.2904 -1.8447 -4.9669 44 1 6.2319 -3.1014 -4.1262 45 1 9.6121 -0.4344 -7.4957 46 1 6.7207 0.4017 -5.5892 47 1 8.4268 0.3483 -5.0799 48 1 6.9844 1.7385 -3.5520 49 1 7.7676 0.3726 -2.7207 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617451072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:30 Heat of formation + Delta-G solvation = -103.027333 kcal Electronic energy + Delta-G solvation = -27075.764797 eV Core-core repulsion = 23422.554749 eV Total energy + Delta-G solvation = -3653.210048 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.65909 -39.97997 -38.79406 -36.10295 -34.97899 -34.65345 -33.78640 -31.86600 -31.40687 -30.63087 -27.09301 -26.29741 -25.39552 -23.96041 -23.54465 -22.29561 -21.88523 -21.22660 -20.70136 -18.93462 -18.21921 -17.54476 -17.04768 -16.77385 -16.44115 -16.16520 -15.73016 -15.48460 -15.38016 -15.26000 -14.79668 -14.74630 -14.58508 -14.25294 -14.08693 -14.01408 -13.77730 -13.22117 -13.11157 -13.01658 -12.67025 -12.61606 -12.52579 -12.32956 -12.19267 -12.14185 -12.03444 -11.89223 -11.83424 -11.77232 -11.50879 -11.34763 -11.21211 -10.68607 -10.56740 -10.36009 -9.98743 -8.71715 -7.88954 -5.34676 1.47864 1.49035 1.59106 1.61994 2.12261 2.51347 2.87084 3.27239 3.51087 3.63688 3.69879 3.71987 3.89576 4.00317 4.03696 4.13587 4.20066 4.25403 4.32281 4.37738 4.44981 4.51855 4.56258 4.63608 4.74660 4.79728 4.82661 4.84382 4.90131 4.93115 5.00623 5.02232 5.04126 5.09870 5.14195 5.15523 5.25824 5.28532 5.33184 5.44020 5.45801 5.58499 5.63539 5.69985 6.27263 6.37846 6.59281 7.13489 7.27946 7.82910 8.35792 9.18178 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.028025 B = 0.002870 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.869569 B = 9752.890957 C =10342.954276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.118 3.882 4 H 0.048 0.952 5 O -0.386 6.386 6 C 0.048 3.952 7 C -0.147 4.147 8 C -0.114 4.114 9 C -0.130 4.130 10 H 0.118 0.882 11 C 0.518 3.482 12 O -0.574 6.574 13 N -0.709 5.709 14 C 0.163 3.837 15 C -0.123 4.123 16 C 0.144 3.856 17 N -0.609 5.609 18 C -0.265 4.265 19 H 0.067 0.933 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.269 1.269 26 C 0.179 3.821 27 C -0.128 4.128 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.412 0.588 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.006 0.994 44 H 0.057 0.943 45 H 0.251 0.749 46 H -0.007 1.007 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.917 9.731 19.690 24.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C 0.060 3.940 4 H 0.066 0.934 5 O -0.306 6.306 6 C -0.028 4.028 7 C -0.184 4.184 8 C -0.152 4.152 9 C -0.152 4.152 10 H 0.136 0.864 11 C 0.305 3.695 12 O -0.453 6.453 13 N -0.360 5.360 14 C 0.058 3.942 15 C -0.163 4.163 16 C 0.018 3.982 17 N -0.333 5.333 18 C -0.395 4.395 19 H 0.085 0.915 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.797 3.203 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.193 1.193 26 C 0.053 3.947 27 C -0.168 4.168 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.131 0.869 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.249 0.751 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.024 0.976 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.011 0.989 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.526 9.415 19.174 24.272 hybrid contribution 1.247 -0.204 -0.859 1.528 sum -10.279 9.211 18.315 22.933 Atomic orbital electron populations 1.21626 0.94817 1.01797 1.01600 1.21716 0.97391 0.94298 1.02847 1.21696 0.91143 0.94576 0.86633 0.93411 1.87936 1.78643 1.25852 1.38130 1.22837 0.94672 0.82179 1.03121 1.22168 0.96143 1.02884 0.97250 1.21646 1.02392 0.92025 0.99118 1.21984 0.98707 0.99362 0.95140 0.86369 1.20865 0.82288 0.77871 0.88447 1.90666 1.50705 1.50551 1.53415 1.46069 1.07492 1.61697 1.20714 1.20627 0.96006 0.92526 0.85050 1.22161 1.00557 0.95320 0.98274 1.20962 0.87563 0.96542 0.93110 1.44348 1.10684 1.01967 1.76281 1.19510 1.01841 1.01931 1.16216 0.91533 1.25821 1.03363 0.99890 0.95402 1.70181 1.35567 1.31268 1.21107 0.85261 0.79750 0.77338 0.77977 1.21383 1.21719 1.19336 1.20552 0.99650 0.82639 0.91882 1.22251 0.95224 1.00071 0.99228 0.93624 0.92198 0.92032 0.90404 0.91288 0.86926 0.93254 0.90088 0.88472 0.89057 0.92054 0.75116 0.92506 0.91542 0.92147 0.97624 0.92491 0.93997 0.98907 0.91892 0.90489 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.81 71.98 0.71 -2.24 16 2 C -0.13 -2.89 5.40 30.59 0.17 -2.72 16 3 C 0.12 2.56 1.78 30.62 0.05 2.61 16 4 H 0.05 1.20 8.04 -2.39 -0.02 1.18 16 5 O -0.39 -7.60 9.94 -148.98 -1.48 -9.08 16 6 C 0.05 0.64 6.84 72.01 0.49 1.14 16 7 C -0.15 -1.57 6.14 30.68 0.19 -1.38 16 8 C -0.11 -1.62 5.19 30.71 0.16 -1.46 16 9 C -0.13 -2.48 2.23 -11.45 -0.03 -2.51 16 10 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 11 C 0.52 13.52 6.80 87.66 0.60 14.12 16 12 O -0.57 -19.71 13.51 -3.02 -0.04 -19.76 16 13 N -0.71 -17.51 4.99 -442.40 -2.21 -19.72 16 14 C 0.16 5.37 2.42 45.02 0.11 5.47 16 15 C -0.12 -4.33 5.65 30.67 0.17 -4.15 16 16 C 0.14 6.25 6.52 86.37 0.56 6.82 16 17 N -0.61 -30.70 2.99 -699.09 -2.09 -32.79 16 18 C -0.26 -14.52 9.58 84.03 0.81 -13.72 16 19 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 20 C -0.05 -2.73 4.92 84.86 0.42 -2.32 16 21 N -0.94 -54.97 11.19 21.65 0.24 -54.72 16 22 Si 0.97 44.27 29.59 68.60 2.03 46.30 16 23 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.18 8.48 5.30 86.36 0.46 8.94 16 27 C -0.13 -4.44 5.55 30.67 0.17 -4.27 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.21 7.82 -2.39 -0.02 1.19 16 31 H 0.08 2.18 5.65 -2.39 -0.01 2.16 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.09 1.01 7.69 -2.39 -0.02 0.99 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.41 7.55 8.11 -92.71 -0.75 6.80 16 40 H 0.06 2.20 7.58 -2.38 -0.02 2.18 16 41 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 45 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 46 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 47 H 0.06 3.34 6.07 -2.38 -0.01 3.32 16 48 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 49 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -67.37 374.87 1.65 -65.72 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.16 Total: 19.72 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.03 Total: 4.33 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -4.06 Total: -107.23 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -1.52 Total: -28.84 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -67.37 1.65 -65.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617451072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.309 kcal (2) G-P(sol) polarization free energy of solvation -67.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds