Wall clock time and date at job start Tue Mar 31 2020 09:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47020 * 2 1 4 4 C 1.52997 * 109.47281 * 240.00248 * 2 1 3 5 5 O 1.45199 * 109.47571 * 119.99688 * 2 1 3 6 6 C 1.34644 * 116.99683 * 60.00105 * 5 2 1 7 7 O 1.21510 * 119.99955 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00120 * 180.27798 * 6 5 2 9 9 C 1.47027 * 125.64830 * 359.41522 * 8 6 5 10 10 C 1.54329 * 107.26888 * 178.85090 * 9 8 6 11 11 C 1.55163 * 103.01842 * 338.13909 * 10 9 8 12 12 H 1.08993 * 111.00500 * 277.23118 * 11 10 9 13 13 C 1.53000 * 111.03245 * 153.39263 * 11 10 9 14 14 N 1.46506 * 109.46674 * 181.33062 * 13 11 10 15 15 C 1.36931 * 120.00130 * 269.99903 * 14 13 11 16 16 H 1.08007 * 119.99562 * 141.10081 * 15 14 13 17 17 C 1.38809 * 120.00748 * 321.10522 * 15 14 13 18 18 N 1.31609 * 120.00682 * 156.22825 * 17 15 14 19 19 Si 1.86804 * 119.99379 * 336.23652 * 17 15 14 20 20 H 1.48500 * 109.47465 * 92.70427 * 19 17 15 21 21 H 1.48504 * 109.46714 * 212.70444 * 19 17 15 22 22 H 1.48501 * 109.46933 * 332.70061 * 19 17 15 23 23 C 1.46503 * 119.99823 * 90.00346 * 14 13 11 24 24 C 1.52993 * 117.50001 * 184.84250 * 23 14 13 25 25 C 1.53000 * 117.49977 * 116.21630 * 23 14 13 26 26 C 1.47425 * 125.65044 * 179.72459 * 8 6 5 27 27 H 1.09002 * 109.47100 * 299.99863 * 1 2 3 28 28 H 1.08998 * 109.47485 * 60.00395 * 1 2 3 29 29 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46744 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46669 * 300.00105 * 3 2 1 32 32 H 1.09002 * 109.47072 * 60.00120 * 3 2 1 33 33 H 1.09001 * 109.46807 * 299.99626 * 4 2 1 34 34 H 1.08998 * 109.47386 * 59.99297 * 4 2 1 35 35 H 1.09007 * 109.47470 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.88125 * 298.40216 * 9 8 6 37 37 H 1.09003 * 109.88321 * 59.55942 * 9 8 6 38 38 H 1.09005 * 110.85117 * 219.67652 * 10 9 8 39 39 H 1.08997 * 110.66851 * 96.52278 * 10 9 8 40 40 H 1.08997 * 109.47894 * 301.32989 * 13 11 10 41 41 H 1.09003 * 109.47068 * 61.33711 * 13 11 10 42 42 H 0.96996 * 120.00725 * 179.97438 * 18 17 15 43 43 H 1.08999 * 115.55002 * 330.55078 * 23 14 13 44 44 H 1.09006 * 117.50007 * 0.02562 * 24 23 14 45 45 H 1.08994 * 117.50351 * 145.02175 * 24 23 14 46 46 H 1.08991 * 117.50380 * 214.97764 * 25 23 14 47 47 H 1.09009 * 117.49471 * 359.97438 * 25 23 14 48 48 H 1.08996 * 110.36502 * 322.93140 * 26 8 6 49 49 H 1.09001 * 110.36492 * 85.14388 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3384 7 8 0.9517 -2.5097 0.5036 8 7 2.0631 -2.6639 2.4197 9 6 2.9151 -2.1416 3.4981 10 6 3.0969 -3.2759 4.5286 11 6 1.8803 -4.1982 4.2513 12 1 0.9880 -3.8308 4.7580 13 6 2.1823 -5.6423 4.6568 14 7 1.0250 -6.4873 4.3516 15 6 0.0447 -6.6706 5.2899 16 1 -0.9920 -6.7032 4.9885 17 6 0.3831 -6.8145 6.6284 18 7 -0.4964 -6.5267 7.5643 19 14 2.0870 -7.4165 7.1014 20 1 2.9818 -6.2510 7.3165 21 1 2.0013 -8.2122 8.3523 22 1 2.6325 -8.2649 6.0114 23 6 0.9167 -7.1361 3.0426 24 6 -0.3672 -7.9125 2.7431 25 6 0.9380 -8.6656 3.0083 26 6 1.7378 -4.0714 2.7140 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 3.8836 -1.8456 3.0949 37 1 2.4317 -1.2870 3.9716 38 1 3.0609 -2.8855 5.5457 39 1 4.0319 -3.8081 4.3540 40 1 3.0501 -6.0012 4.1035 41 1 2.3904 -5.6835 5.7260 42 1 -0.2601 -6.6276 8.4996 43 1 1.3902 -6.6076 2.2153 44 1 -1.1315 -7.9402 3.5198 45 1 -0.7387 -7.8948 1.7185 46 1 1.4251 -9.1433 2.1583 47 1 1.0331 -9.1890 3.9598 48 1 0.7163 -4.2966 2.4078 49 1 2.4395 -4.7362 2.2102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741780586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:11 Heat of formation + Delta-G solvation = -27.485301 kcal Electronic energy + Delta-G solvation = -27337.790600 eV Core-core repulsion = 23687.856300 eV Total energy + Delta-G solvation = -3649.934300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.70847 -38.77732 -37.15791 -36.31357 -34.21442 -33.63063 -31.99767 -30.58369 -28.79726 -27.54797 -27.47493 -25.74310 -24.27729 -22.91723 -21.53815 -21.43838 -20.01454 -19.68072 -19.27384 -17.75096 -16.84047 -16.49374 -16.15328 -15.64055 -15.28418 -14.96894 -14.90896 -14.37177 -13.92346 -13.71072 -13.44540 -13.11428 -12.87401 -12.64381 -12.60390 -12.45072 -12.28220 -12.22653 -12.00996 -11.95954 -11.90502 -11.49660 -11.38506 -11.33048 -10.91084 -10.78272 -10.69304 -10.45583 -10.39320 -10.28681 -9.98069 -9.94825 -9.78650 -9.48011 -9.38021 -8.55935 -8.52332 -6.75428 -6.06845 -3.48582 2.19741 2.97139 3.23736 3.42552 3.49007 3.96470 4.45289 4.60011 4.63729 4.64332 4.78359 4.80471 4.86201 5.03901 5.16314 5.26562 5.30558 5.39344 5.45065 5.50299 5.53789 5.60105 5.63784 5.74519 5.77299 5.82797 5.84744 5.95487 5.99849 6.05774 6.07032 6.09339 6.17172 6.20320 6.26490 6.29898 6.44882 6.45244 6.52036 6.55974 6.60309 6.86603 6.94332 7.12898 7.65209 7.99835 8.36501 8.46384 8.93775 9.64411 10.04773 11.08089 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.003680 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.052725 B = 7606.046428 C = 8243.896670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.665 3.335 7 O -0.570 6.570 8 N -0.602 5.602 9 C 0.109 3.891 10 C -0.132 4.132 11 C -0.113 4.113 12 H 0.095 0.905 13 C 0.151 3.849 14 N -0.572 5.572 15 C -0.270 4.270 16 H 0.083 0.917 17 C 0.042 3.958 18 N -0.894 5.894 19 Si 0.869 3.131 20 H -0.283 1.283 21 H -0.301 1.301 22 H -0.266 1.266 23 C 0.117 3.883 24 C -0.188 4.188 25 C -0.224 4.224 26 C 0.138 3.862 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.264 0.736 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.084 0.916 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.052 12.565 -12.538 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.279 6.279 6 C 0.420 3.580 7 O -0.459 6.459 8 N -0.343 5.343 9 C -0.014 4.014 10 C -0.170 4.170 11 C -0.135 4.135 12 H 0.113 0.887 13 C 0.025 3.975 14 N -0.290 5.290 15 C -0.398 4.398 16 H 0.100 0.900 17 C -0.160 4.160 18 N -0.534 5.534 19 Si 0.699 3.301 20 H -0.211 1.211 21 H -0.229 1.229 22 H -0.191 1.191 23 C 0.009 3.991 24 C -0.226 4.226 25 C -0.264 4.264 26 C 0.017 3.983 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.107 0.893 48 H 0.103 0.897 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.742 12.532 -12.709 19.455 hybrid contribution 0.867 -0.375 0.409 1.029 sum 8.609 12.157 -12.300 19.319 Atomic orbital electron populations 1.22516 0.94035 1.05261 1.02281 1.22018 0.94404 0.91411 0.82335 1.21845 1.02089 0.92726 1.02983 1.22513 1.01372 1.03677 0.96433 1.86304 1.71635 1.23823 1.46137 1.17522 0.78847 0.80196 0.81459 1.90889 1.41507 1.70505 1.43041 1.47365 1.52593 1.13581 1.20772 1.22000 0.94081 0.97429 0.87916 1.22726 0.99534 0.96040 0.98741 1.23093 0.98481 0.98352 0.93541 0.88690 1.21153 0.89424 0.87250 0.99701 1.43685 1.23217 1.50500 1.11626 1.18720 0.88345 1.46704 0.86041 0.89998 1.25492 0.96796 0.97738 0.95933 1.69874 1.35750 1.47552 1.00203 0.87087 0.86048 0.79390 0.77622 1.21098 1.22864 1.19097 1.21237 0.99751 0.88856 0.89257 1.23053 0.92660 1.06038 1.00882 1.23365 1.02338 0.99097 1.01639 1.22364 1.01832 0.77865 0.96217 0.92192 0.91332 0.89224 0.91612 0.90299 0.91513 0.89276 0.91330 0.92348 0.91699 0.91462 0.89852 0.90721 0.93699 0.91697 0.92604 0.88985 0.87928 0.90493 0.90886 0.89299 0.89718 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.37 37.15 0.31 -1.81 16 2 C 0.14 1.55 1.13 -90.62 -0.10 1.45 16 3 C -0.14 -1.16 8.85 37.16 0.33 -0.83 16 4 C -0.18 -2.01 8.37 37.16 0.31 -1.70 16 5 O -0.36 -5.15 9.49 -40.34 -0.38 -5.54 16 6 C 0.66 10.84 7.93 54.05 0.43 11.27 16 7 O -0.57 -10.39 12.14 -19.28 -0.23 -10.62 16 8 N -0.60 -9.39 3.33 -176.29 -0.59 -9.97 16 9 C 0.11 1.40 6.90 -3.06 -0.02 1.38 16 10 C -0.13 -1.77 6.42 -24.89 -0.16 -1.93 16 11 C -0.11 -1.93 3.29 -88.47 -0.29 -2.22 16 12 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 13 C 0.15 2.96 4.08 -4.04 -0.02 2.94 16 14 N -0.57 -12.69 2.30 -165.66 -0.38 -13.08 16 15 C -0.27 -7.10 8.94 -15.06 -0.13 -7.23 16 16 H 0.08 2.37 6.81 -52.48 -0.36 2.01 16 17 C 0.04 1.14 5.27 -17.44 -0.09 1.05 16 18 N -0.89 -26.16 13.97 55.49 0.78 -25.39 16 19 Si 0.87 21.03 25.32 -169.99 -4.30 16.72 16 20 H -0.28 -6.50 6.54 56.52 0.37 -6.13 16 21 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.12 2.31 6.08 -67.93 -0.41 1.90 16 24 C -0.19 -3.61 9.81 -26.73 -0.26 -3.87 16 25 C -0.22 -4.25 10.33 -26.73 -0.28 -4.53 16 26 C 0.14 2.27 4.97 -2.53 -0.01 2.26 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 1.22 5.88 -51.93 -0.31 0.92 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 0.91 8.04 -51.93 -0.42 0.49 16 40 H 0.04 0.79 8.03 -51.93 -0.42 0.37 16 41 H 0.07 1.40 3.49 -51.93 -0.18 1.22 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.09 1.63 6.66 -51.93 -0.35 1.28 16 44 H 0.10 2.21 6.43 -51.93 -0.33 1.87 16 45 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.09 1.89 8.14 -51.92 -0.42 1.47 16 48 H 0.08 1.58 8.04 -51.93 -0.42 1.17 16 49 H 0.06 1.01 7.38 -51.93 -0.38 0.63 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -29.93 376.99 -8.38 -38.32 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -8.55 Total: 5.74 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.40 Total: -1.87 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.19 Total: -48.44 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.62 Total: -16.16 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.30 Total: 16.72 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.93 -8.38 -38.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741780586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.831 kcal (2) G-P(sol) polarization free energy of solvation -29.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds