Wall clock time and date at job start Tue Mar 31 2020 09:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47020 * 2 1 4 4 C 1.52997 * 109.47281 * 240.00248 * 2 1 3 5 5 O 1.45199 * 109.47571 * 119.99688 * 2 1 3 6 6 C 1.34644 * 116.99683 * 60.00105 * 5 2 1 7 7 O 1.21510 * 119.99955 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00120 * 180.27798 * 6 5 2 9 9 C 1.47027 * 125.64830 * 359.41522 * 8 6 5 10 10 C 1.54329 * 107.26888 * 178.85090 * 9 8 6 11 11 C 1.55163 * 103.01842 * 338.13909 * 10 9 8 12 12 H 1.08993 * 111.00500 * 277.23118 * 11 10 9 13 13 C 1.53000 * 111.03245 * 153.39263 * 11 10 9 14 14 N 1.46506 * 109.46674 * 181.33062 * 13 11 10 15 15 C 1.36931 * 120.00130 * 269.99903 * 14 13 11 16 16 H 1.08007 * 119.99562 * 141.10081 * 15 14 13 17 17 C 1.38809 * 120.00748 * 321.10522 * 15 14 13 18 18 N 1.31609 * 120.00682 * 156.22825 * 17 15 14 19 19 Si 1.86804 * 119.99379 * 336.23652 * 17 15 14 20 20 H 1.48500 * 109.47465 * 92.70427 * 19 17 15 21 21 H 1.48504 * 109.46714 * 212.70444 * 19 17 15 22 22 H 1.48501 * 109.46933 * 332.70061 * 19 17 15 23 23 C 1.46503 * 119.99823 * 90.00346 * 14 13 11 24 24 C 1.52993 * 117.50001 * 184.84250 * 23 14 13 25 25 C 1.53000 * 117.49977 * 116.21630 * 23 14 13 26 26 C 1.47425 * 125.65044 * 179.72459 * 8 6 5 27 27 H 1.09002 * 109.47100 * 299.99863 * 1 2 3 28 28 H 1.08998 * 109.47485 * 60.00395 * 1 2 3 29 29 H 1.09001 * 109.46895 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46744 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46669 * 300.00105 * 3 2 1 32 32 H 1.09002 * 109.47072 * 60.00120 * 3 2 1 33 33 H 1.09001 * 109.46807 * 299.99626 * 4 2 1 34 34 H 1.08998 * 109.47386 * 59.99297 * 4 2 1 35 35 H 1.09007 * 109.47470 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.88125 * 298.40216 * 9 8 6 37 37 H 1.09003 * 109.88321 * 59.55942 * 9 8 6 38 38 H 1.09005 * 110.85117 * 219.67652 * 10 9 8 39 39 H 1.08997 * 110.66851 * 96.52278 * 10 9 8 40 40 H 1.08997 * 109.47894 * 301.32989 * 13 11 10 41 41 H 1.09003 * 109.47068 * 61.33711 * 13 11 10 42 42 H 0.96996 * 120.00725 * 179.97438 * 18 17 15 43 43 H 1.08999 * 115.55002 * 330.55078 * 23 14 13 44 44 H 1.09006 * 117.50007 * 0.02562 * 24 23 14 45 45 H 1.08994 * 117.50351 * 145.02175 * 24 23 14 46 46 H 1.08991 * 117.50380 * 214.97764 * 25 23 14 47 47 H 1.09009 * 117.49471 * 359.97438 * 25 23 14 48 48 H 1.08996 * 110.36502 * 322.93140 * 26 8 6 49 49 H 1.09001 * 110.36492 * 85.14388 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3384 7 8 0.9517 -2.5097 0.5036 8 7 2.0631 -2.6639 2.4197 9 6 2.9151 -2.1416 3.4981 10 6 3.0969 -3.2759 4.5286 11 6 1.8803 -4.1982 4.2513 12 1 0.9880 -3.8308 4.7580 13 6 2.1823 -5.6423 4.6568 14 7 1.0250 -6.4873 4.3516 15 6 0.0447 -6.6706 5.2899 16 1 -0.9920 -6.7032 4.9885 17 6 0.3831 -6.8145 6.6284 18 7 -0.4964 -6.5267 7.5643 19 14 2.0870 -7.4165 7.1014 20 1 2.9818 -6.2510 7.3165 21 1 2.0013 -8.2122 8.3523 22 1 2.6325 -8.2649 6.0114 23 6 0.9167 -7.1361 3.0426 24 6 -0.3672 -7.9125 2.7431 25 6 0.9380 -8.6656 3.0083 26 6 1.7378 -4.0714 2.7140 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 3.8836 -1.8456 3.0949 37 1 2.4317 -1.2870 3.9716 38 1 3.0609 -2.8855 5.5457 39 1 4.0319 -3.8081 4.3540 40 1 3.0501 -6.0012 4.1035 41 1 2.3904 -5.6835 5.7260 42 1 -0.2601 -6.6276 8.4996 43 1 1.3902 -6.6076 2.2153 44 1 -1.1315 -7.9402 3.5198 45 1 -0.7387 -7.8948 1.7185 46 1 1.4251 -9.1433 2.1583 47 1 1.0331 -9.1890 3.9598 48 1 0.7163 -4.2966 2.4078 49 1 2.4395 -4.7362 2.2102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741780586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:10 Heat of formation + Delta-G solvation = -44.592844 kcal Electronic energy + Delta-G solvation = -27338.532438 eV Core-core repulsion = 23687.856300 eV Total energy + Delta-G solvation = -3650.676138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.85674 -40.04266 -38.66929 -37.54737 -35.52964 -34.98334 -33.76179 -32.08781 -30.11485 -28.36067 -28.27635 -27.30661 -26.03830 -24.21705 -23.03719 -22.55350 -21.52077 -21.26792 -20.36886 -18.93733 -18.53208 -17.67824 -17.45676 -17.24498 -16.94597 -16.26414 -16.06501 -15.49125 -15.31587 -14.96374 -14.68552 -14.49406 -14.29368 -14.07399 -13.98489 -13.85835 -13.41867 -13.32548 -13.09030 -12.92955 -12.85639 -12.81793 -12.63361 -12.45059 -12.33365 -12.26054 -12.17594 -12.07683 -11.77890 -11.64968 -11.48264 -11.38121 -11.22284 -11.10134 -10.93955 -10.55898 -9.76006 -8.59781 -8.18391 -5.56570 1.07867 1.31014 1.45028 1.55989 1.74269 2.43388 2.89341 3.00217 3.19118 3.35460 3.66928 3.71504 3.77291 3.80915 3.95976 3.99075 4.23032 4.30928 4.38358 4.41551 4.47725 4.49842 4.56919 4.62005 4.64244 4.74679 4.76752 4.82863 4.84294 4.85751 4.88939 4.89569 4.93804 4.99949 5.03146 5.11619 5.19932 5.24256 5.29171 5.31304 5.36694 5.45720 5.47428 5.53110 5.97359 6.23870 6.45176 7.02374 7.25752 7.65428 8.06216 9.01195 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.003680 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.052725 B = 7606.046428 C = 8243.896670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.122 3.878 3 C -0.133 4.133 4 C -0.178 4.178 5 O -0.364 6.364 6 C 0.660 3.340 7 O -0.596 6.596 8 N -0.607 5.607 9 C 0.110 3.890 10 C -0.121 4.121 11 C -0.109 4.109 12 H 0.057 0.943 13 C 0.147 3.853 14 N -0.584 5.584 15 C -0.253 4.253 16 H 0.039 0.961 17 C -0.013 4.013 18 N -0.946 5.946 19 Si 0.933 3.067 20 H -0.258 1.258 21 H -0.314 1.314 22 H -0.260 1.260 23 C 0.107 3.893 24 C -0.193 4.193 25 C -0.209 4.209 26 C 0.147 3.853 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.263 0.737 43 H 0.120 0.880 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.109 0.891 47 H 0.062 0.938 48 H 0.053 0.947 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.326 13.959 -14.443 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.190 4.190 4 C -0.235 4.235 5 O -0.278 6.278 6 C 0.415 3.585 7 O -0.487 6.487 8 N -0.348 5.348 9 C -0.012 4.012 10 C -0.159 4.159 11 C -0.130 4.130 12 H 0.075 0.925 13 C 0.022 3.978 14 N -0.303 5.303 15 C -0.383 4.383 16 H 0.056 0.944 17 C -0.210 4.210 18 N -0.589 5.589 19 Si 0.761 3.239 20 H -0.185 1.185 21 H -0.243 1.243 22 H -0.184 1.184 23 C 0.000 4.000 24 C -0.231 4.231 25 C -0.250 4.250 26 C 0.026 3.974 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.138 0.862 44 H 0.086 0.914 45 H 0.123 0.877 46 H 0.128 0.872 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.056 13.954 -14.642 23.051 hybrid contribution -0.277 -0.758 0.877 1.192 sum 10.779 13.196 -13.765 21.904 Atomic orbital electron populations 1.22483 0.94488 1.03359 1.03513 1.22459 0.94329 0.92982 0.81649 1.21869 1.02537 0.90247 1.04303 1.22459 1.01717 1.02047 0.97297 1.86317 1.71509 1.22529 1.47484 1.17687 0.78588 0.80850 0.81328 1.90883 1.42566 1.71236 1.44065 1.47416 1.52858 1.13289 1.21257 1.22149 0.94804 0.97200 0.87058 1.22728 0.98410 0.95315 0.99484 1.22807 0.98903 0.97660 0.93665 0.92475 1.21255 0.89263 0.88156 0.99124 1.43760 1.23079 1.51773 1.11691 1.18493 0.87776 1.44979 0.87026 0.94364 1.26051 1.00654 0.98426 0.95823 1.70008 1.38296 1.50189 1.00454 0.86037 0.81968 0.79285 0.76586 1.18467 1.24283 1.18401 1.21495 1.00294 0.89575 0.88659 1.23015 0.92116 1.06626 1.01371 1.23342 1.01764 0.98148 1.01733 1.22129 1.00489 0.79073 0.95675 0.92349 0.88729 0.92581 0.90900 0.87774 0.91407 0.92380 0.88879 0.91675 0.89146 0.91118 0.88972 0.88309 0.90589 0.93473 0.92838 0.86227 0.91388 0.87660 0.87242 0.91895 0.92810 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.02 8.37 71.98 0.60 -3.42 16 2 C 0.12 2.58 1.13 -10.79 -0.01 2.56 16 3 C -0.13 -1.78 8.85 71.98 0.64 -1.14 16 4 C -0.18 -3.60 8.37 71.98 0.60 -3.00 16 5 O -0.36 -9.78 9.49 -55.53 -0.53 -10.31 16 6 C 0.66 21.15 7.93 129.79 1.03 22.18 16 7 O -0.60 -22.02 12.14 19.81 0.24 -21.78 16 8 N -0.61 -18.17 3.33 -942.06 -3.13 -21.31 16 9 C 0.11 2.54 6.90 86.73 0.60 3.14 16 10 C -0.12 -2.89 6.42 31.79 0.20 -2.69 16 11 C -0.11 -3.62 3.29 -9.40 -0.03 -3.65 16 12 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 13 C 0.15 5.52 4.08 86.38 0.35 5.88 16 14 N -0.58 -25.93 2.30 -678.03 -1.56 -27.49 16 15 C -0.25 -13.87 8.94 84.03 0.75 -13.11 16 16 H 0.04 2.39 6.81 -2.91 -0.02 2.37 16 17 C -0.01 -0.72 5.27 84.86 0.45 -0.27 16 18 N -0.95 -57.94 13.97 21.65 0.30 -57.64 16 19 Si 0.93 43.87 25.32 68.60 1.74 45.61 16 20 H -0.26 -11.02 6.54 99.48 0.65 -10.37 16 21 H -0.31 -15.34 7.11 99.48 0.71 -14.63 16 22 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 23 C 0.11 4.10 6.08 44.99 0.27 4.37 16 24 C -0.19 -7.40 9.81 30.59 0.30 -7.10 16 25 C -0.21 -7.61 10.33 30.60 0.32 -7.30 16 26 C 0.15 4.73 4.97 86.86 0.43 5.16 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.65 5.88 -2.39 -0.01 1.63 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.57 5.88 -2.39 -0.01 1.55 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.10 1.94 8.04 -2.39 -0.02 1.92 16 40 H 0.08 2.40 8.03 -2.39 -0.02 2.38 16 41 H 0.05 1.95 3.49 -2.39 -0.01 1.94 16 42 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.12 3.93 6.66 -2.39 -0.02 3.91 16 44 H 0.07 3.09 6.43 -2.38 -0.02 3.08 16 45 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 46 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 48 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 49 H 0.08 2.31 7.38 -2.39 -0.02 2.29 16 Total: -1.00 -69.46 376.99 4.42 -65.04 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.86 Total: 26.27 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 6.50 Total: 1.61 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -4.39 Total: -106.44 kcal Atomic # 8 Polarization: -31.80 SS G_CDS: -0.29 Total: -32.09 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.74 Total: 45.61 kcal Total: -69.46 4.42 -65.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741780586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.443 kcal (2) G-P(sol) polarization free energy of solvation -69.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds