Wall clock time and date at job start Tue Mar 31 2020 10:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 H 1.08994 * 110.33064 * 52.75067 * 3 2 1 5 5 O 1.44431 * 110.46556 * 290.43972 * 3 2 1 6 6 C 1.44647 * 105.36589 * 200.68710 * 5 3 2 7 7 C 1.54479 * 104.69830 * 40.34390 * 6 5 3 8 8 C 1.54480 * 110.37426 * 175.00370 * 3 2 1 9 9 H 1.08996 * 110.50926 * 24.27302 * 8 3 2 10 10 C 1.50701 * 110.62669 * 261.62008 * 8 3 2 11 11 O 1.21284 * 119.99947 * 3.83808 * 10 8 3 12 12 N 1.34771 * 120.00199 * 183.82944 * 10 8 3 13 13 C 1.46499 * 120.00050 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.46862 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.49839 * 55.06970 * 14 13 12 16 16 C 1.53043 * 109.49633 * 175.16360 * 14 13 12 17 17 C 1.53036 * 109.53778 * 181.31718 * 16 14 13 18 18 C 1.53190 * 109.31725 * 298.63455 * 17 16 14 19 19 N 1.46931 * 108.76932 * 54.63370 * 18 17 16 20 20 C 1.36942 * 120.62707 * 126.37440 * 19 18 17 21 21 H 1.07994 * 120.00052 * 207.69447 * 20 19 18 22 22 C 1.38813 * 120.00034 * 27.69814 * 20 19 18 23 23 N 1.31618 * 120.00180 * 17.34896 * 22 20 19 24 24 Si 1.86796 * 119.99838 * 197.35174 * 22 20 19 25 25 H 1.48498 * 109.47148 * 89.99927 * 24 22 20 26 26 H 1.48493 * 109.47047 * 209.99705 * 24 22 20 27 27 H 1.48501 * 109.47321 * 329.99770 * 24 22 20 28 28 C 1.46924 * 118.74059 * 306.39338 * 19 18 17 29 29 H 1.09001 * 109.46869 * 299.99933 * 1 2 3 30 30 H 1.08995 * 109.47028 * 60.00166 * 1 2 3 31 31 H 1.08997 * 109.46845 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46869 * 240.00067 * 2 1 3 33 33 H 1.09002 * 109.47565 * 120.00214 * 2 1 3 34 34 H 1.09007 * 110.33885 * 281.58681 * 6 5 3 35 35 H 1.09007 * 110.50416 * 159.18608 * 6 5 3 36 36 H 1.09000 * 110.51174 * 217.47346 * 7 6 5 37 37 H 1.09003 * 110.50621 * 94.90443 * 7 6 5 38 38 H 0.97003 * 119.99966 * 0.02562 * 12 10 8 39 39 H 1.09000 * 109.47355 * 300.00476 * 13 12 10 40 40 H 1.08996 * 109.46948 * 60.01074 * 13 12 10 41 41 H 1.09004 * 109.46078 * 301.33921 * 16 14 13 42 42 H 1.09004 * 109.45757 * 61.29625 * 16 14 13 43 43 H 1.09001 * 109.49559 * 178.68170 * 17 16 14 44 44 H 1.09006 * 109.52178 * 58.60557 * 17 16 14 45 45 H 1.08999 * 109.58278 * 294.85569 * 18 17 16 46 46 H 1.08993 * 109.59291 * 174.42046 * 18 17 16 47 47 H 0.96996 * 120.00001 * 180.02562 * 23 22 20 48 48 H 1.09009 * 109.58696 * 293.81941 * 28 19 18 49 49 H 1.09006 * 109.58373 * 173.40326 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5831 2.0057 0.8136 5 8 1.7629 2.0761 -1.2680 6 6 2.6823 3.1898 -1.3490 7 6 4.0105 2.6438 -0.7796 8 6 3.5795 1.4686 0.1261 9 1 4.0080 0.5328 -0.2326 10 6 3.9910 1.7235 1.5533 11 8 3.1485 1.8047 2.4220 12 7 5.2950 1.8612 1.8643 13 6 5.6951 2.1084 3.2517 14 6 7.2187 2.2247 3.3302 15 1 7.5611 2.9930 2.6369 16 6 7.6294 2.6021 4.7554 17 6 9.1509 2.7508 4.8271 18 6 9.8080 1.4131 4.4728 19 7 9.3058 0.9715 3.1645 20 6 10.1746 0.6507 2.1558 21 1 9.8708 0.7623 1.1255 22 6 11.4459 0.1818 2.4576 23 7 11.7092 -0.2771 3.6627 24 14 12.7829 0.2024 1.1533 25 1 13.5146 1.4932 1.2148 26 1 13.7297 -0.9152 1.3973 27 1 12.1675 0.0458 -0.1891 28 6 7.8538 0.8811 2.9589 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.3236 4.0222 -0.7435 35 1 2.8135 3.5020 -2.3851 36 1 4.5191 3.4102 -0.1948 37 1 4.6541 2.2893 -1.5848 38 1 5.9688 1.7965 1.1694 39 1 5.2417 3.0362 3.6008 40 1 5.3607 1.2821 3.8790 41 1 7.1589 3.5459 5.0310 42 1 7.3079 1.8213 5.4447 43 1 9.4407 3.0424 5.8366 44 1 9.4760 3.5144 4.1204 45 1 9.5567 0.6706 5.2302 46 1 10.8897 1.5384 4.4256 47 1 12.5975 -0.6044 3.8737 48 1 7.4432 0.0951 3.5929 49 1 7.6463 0.6553 1.9129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806922034.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:31 Heat of formation + Delta-G solvation = -85.910373 kcal Electronic energy + Delta-G solvation = -26637.053255 eV Core-core repulsion = 22984.585454 eV Total energy + Delta-G solvation = -3652.467801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.64318 -38.80075 -37.72064 -34.91466 -33.73770 -33.20227 -32.44514 -30.49905 -30.27758 -28.58993 -25.80110 -25.31500 -23.90925 -22.57092 -22.09854 -21.42126 -20.93566 -20.09750 -19.09045 -17.55427 -16.71479 -16.32624 -16.11655 -15.83348 -15.18152 -15.05097 -14.82449 -14.29459 -13.86431 -13.74626 -13.63760 -13.48722 -13.36780 -13.32885 -12.83907 -12.48016 -12.40065 -12.21937 -12.11844 -11.76884 -11.59645 -11.34853 -11.16373 -11.06591 -10.99836 -10.93136 -10.76289 -10.54173 -10.27288 -10.22778 -10.07549 -9.97256 -9.80217 -9.56739 -9.47435 -8.99495 -8.51397 -6.73351 -5.83970 -3.27014 2.56939 3.13283 3.33382 3.40277 3.41556 3.64004 4.26539 4.36637 4.43336 4.58101 4.73401 4.95773 4.97482 5.00285 5.08148 5.17467 5.24281 5.29091 5.38766 5.41277 5.45219 5.49167 5.56854 5.62243 5.65790 5.76268 5.78080 5.83493 5.89685 5.94850 5.97522 6.14215 6.18080 6.27534 6.32407 6.44858 6.53859 6.60470 6.65284 6.72047 6.80913 6.90655 7.35271 7.50504 7.62607 7.73472 8.18230 8.39117 9.15480 9.78999 10.35653 11.24239 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017057 B = 0.003021 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.175463 B = 9265.770109 C =10024.884253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.088 0.912 5 O -0.370 6.370 6 C 0.047 3.953 7 C -0.148 4.148 8 C -0.145 4.145 9 H 0.112 0.888 10 C 0.521 3.479 11 O -0.543 6.543 12 N -0.720 5.720 13 C 0.126 3.874 14 C -0.118 4.118 15 H 0.073 0.927 16 C -0.099 4.099 17 C -0.142 4.142 18 C 0.168 3.832 19 N -0.591 5.591 20 C -0.255 4.255 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.901 5.901 24 Si 0.902 3.098 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.154 3.846 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.404 0.596 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.087 0.913 47 H 0.254 0.746 48 H 0.018 0.982 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.305 5.823 -6.440 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.106 0.894 5 O -0.289 6.289 6 C -0.030 4.030 7 C -0.186 4.186 8 C -0.166 4.166 9 H 0.130 0.870 10 C 0.306 3.694 11 O -0.421 6.421 12 N -0.371 5.371 13 C 0.003 3.997 14 C -0.138 4.138 15 H 0.091 0.909 16 C -0.138 4.138 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.314 5.314 20 C -0.385 4.385 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.545 5.545 24 Si 0.732 3.268 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.027 3.973 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.239 0.761 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.036 0.964 46 H 0.105 0.895 47 H 0.064 0.936 48 H 0.036 0.964 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.887 5.718 -5.905 18.782 hybrid contribution 1.431 0.013 -0.746 1.614 sum -15.456 5.731 -6.652 17.776 Atomic orbital electron populations 1.21705 0.95102 1.01562 1.02214 1.21572 0.96963 0.94059 1.02766 1.22959 0.91320 0.95343 0.87039 0.89421 1.89157 1.58433 1.43634 1.37676 1.23413 0.87778 0.89959 1.01867 1.22969 0.99071 0.97137 0.99432 1.22769 0.98797 1.01647 0.93407 0.86977 1.20244 0.82643 0.76352 0.90123 1.90687 1.50732 1.50743 1.49920 1.46088 1.07294 1.72566 1.11196 1.21484 0.95516 1.01071 0.81658 1.21958 0.91790 1.01497 0.98584 0.90896 1.21341 0.97231 0.99913 0.95282 1.22170 0.94644 1.01524 0.99742 1.20808 0.99430 0.89577 0.85907 1.44043 0.99227 1.76517 1.11583 1.19165 0.94310 1.37669 0.87341 0.91721 1.25040 0.99478 0.98291 0.96766 1.70038 1.20890 1.43358 1.20214 0.86292 0.82018 0.77265 0.81192 1.21431 1.21749 1.20444 1.20890 0.86053 0.92143 0.98166 0.92649 0.92204 0.92709 0.91167 0.90414 0.92144 0.88732 0.89905 0.89423 0.76129 0.91981 0.91530 0.93455 0.92465 0.93161 0.92767 0.96437 0.89510 0.93578 0.96370 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.85 37.16 0.37 -1.01 16 2 C -0.12 -1.17 5.56 -26.73 -0.15 -1.32 16 3 C 0.09 1.01 2.57 -25.96 -0.07 0.94 16 4 H 0.09 1.12 6.97 -51.93 -0.36 0.76 16 5 O -0.37 -4.14 11.14 -35.23 -0.39 -4.54 16 6 C 0.05 0.41 7.65 37.93 0.29 0.70 16 7 C -0.15 -1.26 6.66 -25.17 -0.17 -1.43 16 8 C -0.14 -1.49 3.05 -90.21 -0.27 -1.77 16 9 H 0.11 1.04 7.87 -51.93 -0.41 0.63 16 10 C 0.52 6.77 6.98 -10.99 -0.08 6.70 16 11 O -0.54 -8.86 15.50 5.55 0.09 -8.77 16 12 N -0.72 -9.00 5.22 -60.29 -0.31 -9.31 16 13 C 0.13 1.76 5.07 -4.04 -0.02 1.74 16 14 C -0.12 -1.85 2.38 -90.50 -0.21 -2.07 16 15 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 16 C -0.10 -1.59 5.17 -26.69 -0.14 -1.72 16 17 C -0.14 -2.60 6.08 -26.61 -0.16 -2.76 16 18 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 19 N -0.59 -14.18 2.99 -172.32 -0.52 -14.70 16 20 C -0.26 -6.74 9.59 -15.06 -0.14 -6.89 16 21 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 22 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 23 N -0.90 -25.66 11.19 55.49 0.62 -25.04 16 24 Si 0.90 21.12 29.59 -169.99 -5.03 16.10 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.15 3.00 5.60 -3.72 -0.02 2.98 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.57 8.01 -51.93 -0.42 0.15 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.70 7.68 -51.93 -0.40 0.30 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.40 4.53 7.68 -40.82 -0.31 4.21 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 2.27 6.03 -51.93 -0.31 1.95 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 49 H 0.05 0.92 7.13 -51.93 -0.37 0.55 16 LS Contribution 381.22 15.07 5.74 5.74 Total: -1.00 -30.56 381.22 -9.58 -40.14 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -8.90 Total: 2.39 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -0.88 Total: -2.01 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.21 Total: -49.06 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.31 Total: -13.31 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.56 -9.58 -40.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806922034.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.766 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds