Wall clock time and date at job start Tue Mar 31 2020 10:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47272 * 2 1 4 4 H 1.08994 * 110.33064 * 52.75067 * 3 2 1 5 5 O 1.44431 * 110.46556 * 290.43972 * 3 2 1 6 6 C 1.44647 * 105.36589 * 200.68710 * 5 3 2 7 7 C 1.54479 * 104.69830 * 40.34390 * 6 5 3 8 8 C 1.54480 * 110.37426 * 175.00370 * 3 2 1 9 9 H 1.08996 * 110.50926 * 24.27302 * 8 3 2 10 10 C 1.50701 * 110.62669 * 261.62008 * 8 3 2 11 11 O 1.21284 * 119.99947 * 3.83808 * 10 8 3 12 12 N 1.34771 * 120.00199 * 183.82944 * 10 8 3 13 13 C 1.46499 * 120.00050 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.46862 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.49839 * 55.06970 * 14 13 12 16 16 C 1.53043 * 109.49633 * 175.16360 * 14 13 12 17 17 C 1.53036 * 109.53778 * 181.31718 * 16 14 13 18 18 C 1.53190 * 109.31725 * 298.63455 * 17 16 14 19 19 N 1.46931 * 108.76932 * 54.63370 * 18 17 16 20 20 C 1.36942 * 120.62707 * 126.37440 * 19 18 17 21 21 H 1.07994 * 120.00052 * 207.69447 * 20 19 18 22 22 C 1.38813 * 120.00034 * 27.69814 * 20 19 18 23 23 N 1.31618 * 120.00180 * 17.34896 * 22 20 19 24 24 Si 1.86796 * 119.99838 * 197.35174 * 22 20 19 25 25 H 1.48498 * 109.47148 * 89.99927 * 24 22 20 26 26 H 1.48493 * 109.47047 * 209.99705 * 24 22 20 27 27 H 1.48501 * 109.47321 * 329.99770 * 24 22 20 28 28 C 1.46924 * 118.74059 * 306.39338 * 19 18 17 29 29 H 1.09001 * 109.46869 * 299.99933 * 1 2 3 30 30 H 1.08995 * 109.47028 * 60.00166 * 1 2 3 31 31 H 1.08997 * 109.46845 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46869 * 240.00067 * 2 1 3 33 33 H 1.09002 * 109.47565 * 120.00214 * 2 1 3 34 34 H 1.09007 * 110.33885 * 281.58681 * 6 5 3 35 35 H 1.09007 * 110.50416 * 159.18608 * 6 5 3 36 36 H 1.09000 * 110.51174 * 217.47346 * 7 6 5 37 37 H 1.09003 * 110.50621 * 94.90443 * 7 6 5 38 38 H 0.97003 * 119.99966 * 0.02562 * 12 10 8 39 39 H 1.09000 * 109.47355 * 300.00476 * 13 12 10 40 40 H 1.08996 * 109.46948 * 60.01074 * 13 12 10 41 41 H 1.09004 * 109.46078 * 301.33921 * 16 14 13 42 42 H 1.09004 * 109.45757 * 61.29625 * 16 14 13 43 43 H 1.09001 * 109.49559 * 178.68170 * 17 16 14 44 44 H 1.09006 * 109.52178 * 58.60557 * 17 16 14 45 45 H 1.08999 * 109.58278 * 294.85569 * 18 17 16 46 46 H 1.08993 * 109.59291 * 174.42046 * 18 17 16 47 47 H 0.96996 * 120.00001 * 180.02562 * 23 22 20 48 48 H 1.09009 * 109.58696 * 293.81941 * 28 19 18 49 49 H 1.09006 * 109.58373 * 173.40326 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5831 2.0057 0.8136 5 8 1.7629 2.0761 -1.2680 6 6 2.6823 3.1898 -1.3490 7 6 4.0105 2.6438 -0.7796 8 6 3.5795 1.4686 0.1261 9 1 4.0080 0.5328 -0.2326 10 6 3.9910 1.7235 1.5533 11 8 3.1485 1.8047 2.4220 12 7 5.2950 1.8612 1.8643 13 6 5.6951 2.1084 3.2517 14 6 7.2187 2.2247 3.3302 15 1 7.5611 2.9930 2.6369 16 6 7.6294 2.6021 4.7554 17 6 9.1509 2.7508 4.8271 18 6 9.8080 1.4131 4.4728 19 7 9.3058 0.9715 3.1645 20 6 10.1746 0.6507 2.1558 21 1 9.8708 0.7623 1.1255 22 6 11.4459 0.1818 2.4576 23 7 11.7092 -0.2771 3.6627 24 14 12.7829 0.2024 1.1533 25 1 13.5146 1.4932 1.2148 26 1 13.7297 -0.9152 1.3973 27 1 12.1675 0.0458 -0.1891 28 6 7.8538 0.8811 2.9589 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.3236 4.0222 -0.7435 35 1 2.8135 3.5020 -2.3851 36 1 4.5191 3.4102 -0.1948 37 1 4.6541 2.2893 -1.5848 38 1 5.9688 1.7965 1.1694 39 1 5.2417 3.0362 3.6008 40 1 5.3607 1.2821 3.8790 41 1 7.1589 3.5459 5.0310 42 1 7.3079 1.8213 5.4447 43 1 9.4407 3.0424 5.8366 44 1 9.4760 3.5144 4.1204 45 1 9.5567 0.6706 5.2302 46 1 10.8897 1.5384 4.4256 47 1 12.5975 -0.6044 3.8737 48 1 7.4432 0.0951 3.5929 49 1 7.6463 0.6553 1.9129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806922034.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:30 Heat of formation + Delta-G solvation = -104.687821 kcal Electronic energy + Delta-G solvation = -26637.867506 eV Core-core repulsion = 22984.585454 eV Total energy + Delta-G solvation = -3653.282052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.57752 -39.89521 -39.09442 -36.28782 -34.76378 -34.48663 -33.43779 -32.29864 -31.69287 -29.36065 -27.29601 -26.95258 -24.81845 -23.84197 -23.33646 -22.51153 -22.10183 -21.20628 -20.49932 -18.74557 -18.35431 -17.24928 -17.06983 -16.83916 -16.64171 -16.28812 -15.98497 -15.71595 -15.33089 -15.02352 -14.71536 -14.56511 -14.47925 -14.19263 -14.11309 -13.97058 -13.76914 -13.62293 -13.07873 -13.00450 -12.87106 -12.51958 -12.51180 -12.34584 -12.25851 -11.95282 -11.91437 -11.82526 -11.75594 -11.69994 -11.58067 -11.33444 -11.10932 -10.92676 -10.65119 -10.52952 -10.09164 -8.68264 -7.86335 -5.32030 1.47954 1.49545 1.55598 1.57822 2.13134 2.51655 2.86532 3.28439 3.50925 3.57949 3.59584 3.74083 3.98774 4.00963 4.02532 4.07230 4.15825 4.21112 4.29715 4.40474 4.42924 4.53109 4.57602 4.61635 4.76244 4.77786 4.82367 4.85861 4.87908 4.90440 4.98957 5.01017 5.03278 5.08246 5.10461 5.20422 5.23091 5.33125 5.37465 5.39313 5.47543 5.57599 5.67256 5.78369 5.83199 6.39128 6.50249 7.15261 7.17134 7.86804 8.38730 9.19935 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.017057 B = 0.003021 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.175463 B = 9265.770109 C =10024.884253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.092 3.908 4 H 0.066 0.934 5 O -0.383 6.383 6 C 0.041 3.959 7 C -0.143 4.143 8 C -0.141 4.141 9 H 0.126 0.874 10 C 0.522 3.478 11 O -0.579 6.579 12 N -0.715 5.715 13 C 0.137 3.863 14 C -0.099 4.099 15 H 0.078 0.922 16 C -0.098 4.098 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.609 5.609 20 C -0.260 4.260 21 H 0.073 0.927 22 C -0.053 4.053 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.286 1.286 26 H -0.299 1.299 27 H -0.265 1.265 28 C 0.153 3.847 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.412 0.588 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.054 0.946 45 H -0.009 1.009 46 H 0.051 0.949 47 H 0.248 0.752 48 H 0.004 0.996 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.049 7.024 -8.112 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.084 0.916 5 O -0.302 6.302 6 C -0.036 4.036 7 C -0.180 4.180 8 C -0.162 4.162 9 H 0.144 0.856 10 C 0.309 3.691 11 O -0.459 6.459 12 N -0.366 5.366 13 C 0.013 3.987 14 C -0.120 4.120 15 H 0.097 0.903 16 C -0.136 4.136 17 C -0.169 4.169 18 C 0.046 3.954 19 N -0.332 5.332 20 C -0.390 4.390 21 H 0.090 0.910 22 C -0.248 4.248 23 N -0.583 5.583 24 Si 0.795 3.205 25 H -0.213 1.213 26 H -0.226 1.226 27 H -0.189 1.189 28 C 0.027 3.973 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.134 0.866 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.249 0.751 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.009 0.991 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.022 0.978 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.649 6.937 -7.605 20.432 hybrid contribution 1.612 -0.376 -0.209 1.668 sum -16.037 6.562 -7.814 19.008 Atomic orbital electron populations 1.21686 0.94693 1.02253 1.01739 1.21583 0.97411 0.93554 1.02863 1.22868 0.91748 0.95511 0.86527 0.91634 1.89145 1.59313 1.44407 1.37368 1.23613 0.87425 0.89280 1.03262 1.22996 0.99182 0.96342 0.99523 1.22775 0.98360 1.03174 0.91896 0.85568 1.20662 0.82196 0.75333 0.90894 1.90677 1.51642 1.52351 1.51218 1.46022 1.07505 1.72214 1.10859 1.21272 0.93890 1.01152 0.82397 1.21713 0.92628 0.99007 0.98639 0.90329 1.21340 0.95391 1.01535 0.95295 1.21994 0.96069 0.98156 1.00656 1.20640 0.97886 0.91573 0.85289 1.44316 1.00906 1.76768 1.11238 1.19563 0.94848 1.36306 0.88313 0.90961 1.25806 1.01647 0.98738 0.98636 1.70201 1.20851 1.45067 1.22208 0.85280 0.79165 0.76653 0.79443 1.21327 1.22632 1.18918 1.21024 0.83742 0.94007 0.98523 0.93302 0.92463 0.91449 0.90256 0.90991 0.92275 0.86615 0.89625 0.87505 0.75143 0.90986 0.92627 0.90187 0.92787 0.91371 0.92756 0.99053 0.93024 0.94244 0.97791 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.85 71.98 0.71 -1.90 16 2 C -0.12 -2.23 5.56 30.59 0.17 -2.06 16 3 C 0.09 1.94 2.57 31.10 0.08 2.02 16 4 H 0.07 1.68 6.97 -2.39 -0.02 1.67 16 5 O -0.38 -7.99 11.14 -148.98 -1.66 -9.65 16 6 C 0.04 0.62 7.65 72.48 0.55 1.18 16 7 C -0.14 -2.04 6.66 31.61 0.21 -1.83 16 8 C -0.14 -2.64 3.05 -10.53 -0.03 -2.67 16 9 H 0.13 2.03 7.87 -2.39 -0.02 2.02 16 10 C 0.52 12.79 6.98 87.66 0.61 13.40 16 11 O -0.58 -18.49 15.50 -3.04 -0.05 -18.54 16 12 N -0.71 -16.34 5.22 -463.06 -2.42 -18.76 16 13 C 0.14 3.53 5.07 86.38 0.44 3.96 16 14 C -0.10 -2.92 2.38 -10.72 -0.03 -2.94 16 15 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 16 C -0.10 -2.88 5.17 30.62 0.16 -2.72 16 17 C -0.13 -4.59 6.08 30.67 0.19 -4.40 16 18 C 0.17 8.11 5.31 86.36 0.46 8.57 16 19 N -0.61 -29.23 2.99 -699.10 -2.09 -31.33 16 20 C -0.26 -13.69 9.59 84.03 0.81 -12.88 16 21 H 0.07 3.62 7.89 -2.91 -0.02 3.59 16 22 C -0.05 -2.89 4.91 84.86 0.42 -2.48 16 23 N -0.94 -54.92 11.19 21.65 0.24 -54.68 16 24 Si 0.97 43.63 29.59 68.60 2.03 45.65 16 25 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 27 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 28 C 0.15 5.80 5.60 86.36 0.48 6.28 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.04 8.01 -2.39 -0.02 1.02 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 34 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.09 1.20 7.68 -2.39 -0.02 1.18 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.41 8.14 7.68 -92.71 -0.71 7.43 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 45 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 46 H 0.05 2.79 6.03 -2.39 -0.01 2.77 16 47 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 48 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 49 H 0.06 2.08 7.13 -2.38 -0.02 2.06 16 Total: -1.00 -67.01 381.22 1.48 -65.53 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.20 Total: 20.23 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 5.23 Total: 1.53 kcal Atomic # 7 Polarization: -100.49 SS G_CDS: -4.27 Total: -104.76 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -1.71 Total: -28.19 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -67.01 1.48 -65.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806922034.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.156 kcal (2) G-P(sol) polarization free energy of solvation -67.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds