Wall clock time and date at job start Tue Mar 31 2020 10:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47281 * 2 1 4 4 N 1.46496 * 109.47436 * 239.99796 * 2 1 3 5 5 C 1.34777 * 120.00089 * 55.08758 * 4 2 1 6 6 O 1.21281 * 119.99788 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00498 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47356 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47128 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47412 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47640 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99527 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00358 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99554 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47310 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46832 * 119.99896 * 15 13 11 18 18 H 1.48495 * 109.47265 * 239.99694 * 15 13 11 19 19 C 1.50703 * 109.47374 * 119.99746 * 2 1 3 20 20 O 1.21278 * 120.00204 * 256.50561 * 19 2 1 21 21 N 1.34772 * 119.99841 * 76.22584 * 19 2 1 22 22 C 1.47025 * 125.65078 * 354.49959 * 21 19 2 23 23 C 1.54314 * 107.27913 * 180.96596 * 22 21 19 24 24 C 1.55156 * 102.86297 * 22.52589 * 23 22 21 25 25 C 1.47431 * 125.64941 * 174.80629 * 21 19 2 26 26 H 1.09008 * 109.47261 * 300.00064 * 1 2 3 27 27 H 1.08996 * 109.47095 * 60.00022 * 1 2 3 28 28 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47663 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47190 * 300.00217 * 3 2 1 31 31 H 1.09004 * 109.47429 * 60.00035 * 3 2 1 32 32 H 0.97004 * 120.00658 * 235.08998 * 4 2 1 33 33 H 1.08999 * 109.47331 * 300.00228 * 7 5 4 34 34 H 1.08999 * 109.46663 * 60.00142 * 7 5 4 35 35 H 1.09001 * 109.47200 * 299.99814 * 8 7 5 36 36 H 1.08993 * 109.47286 * 59.99878 * 8 7 5 37 37 H 1.08999 * 109.47240 * 299.99885 * 9 8 7 38 38 H 1.09004 * 109.47365 * 60.00158 * 9 8 7 39 39 H 1.08999 * 109.46970 * 300.00229 * 10 9 8 40 40 H 1.09004 * 109.46582 * 59.99856 * 10 9 8 41 41 H 0.97000 * 119.99169 * 179.97438 * 14 13 11 42 42 H 1.08998 * 109.88054 * 300.51329 * 22 21 19 43 43 H 1.09001 * 109.88080 * 61.67497 * 22 21 19 44 44 H 1.08997 * 110.92484 * 264.11506 * 23 22 21 45 45 H 1.09000 * 110.58772 * 140.78596 * 23 22 21 46 46 H 1.08996 * 111.00523 * 206.22699 * 24 23 22 47 47 H 1.09005 * 111.00397 * 82.37679 * 24 23 22 48 48 H 1.09000 * 110.36152 * 274.67308 * 25 21 19 49 49 H 1.08999 * 110.36700 * 36.88708 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.6132 -0.2908 -2.4178 6 8 0.8447 0.6411 -2.5269 7 6 2.1151 -1.0015 -3.6482 8 6 1.5074 -0.3547 -4.8944 9 6 2.0164 -1.0767 -6.1435 10 6 1.4082 -0.4303 -7.3898 11 6 1.9101 -1.1410 -8.6202 12 1 2.5942 -1.9711 -8.5230 13 6 1.4961 -0.7316 -9.8700 14 7 0.6627 0.2789 -9.9882 15 14 2.1177 -1.6131 -11.3951 16 1 3.0365 -2.7086 -10.9937 17 1 0.9668 -2.1816 -12.1418 18 1 2.8434 -0.6504 -12.2620 19 6 2.0323 -0.7104 1.2305 20 8 2.4656 -0.0709 2.1655 21 7 1.9950 -2.0561 1.2942 22 6 1.3896 -2.9449 0.2916 23 6 1.5640 -4.3923 0.7973 24 6 1.7463 -4.2043 2.3266 25 6 2.5488 -2.8804 2.3837 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.6333 -1.4357 -1.1089 33 1 3.2015 -0.9264 -3.6934 34 1 1.8249 -2.0513 -3.6051 35 1 0.4209 -0.4295 -4.8495 36 1 1.7978 0.6950 -4.9373 37 1 3.1030 -1.0023 -6.1888 38 1 1.7256 -2.1263 -6.1005 39 1 0.3218 -0.5050 -7.3444 40 1 1.6987 0.6194 -7.4331 41 1 0.3717 0.5671 -10.8675 42 1 0.3300 -2.7134 0.1827 43 1 1.8976 -2.8248 -0.6652 44 1 2.4478 -4.8544 0.3576 45 1 0.6726 -4.9826 0.5849 46 1 2.3184 -5.0267 2.7560 47 1 0.7826 -4.0987 2.8250 48 1 3.6084 -3.0715 2.2138 49 1 2.4024 -2.3872 3.3447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813554462.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:43 Heat of formation + Delta-G solvation = -87.016091 kcal Electronic energy + Delta-G solvation = -26269.127083 eV Core-core repulsion = 22616.611334 eV Total energy + Delta-G solvation = -3652.515748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.24784 -39.55376 -37.92518 -35.94197 -34.81520 -32.75949 -32.05150 -31.80254 -29.59233 -29.45759 -27.44063 -25.77916 -25.12311 -23.05635 -22.02713 -21.58476 -20.04403 -20.00330 -19.68279 -17.98701 -17.13340 -16.56554 -16.21183 -15.99492 -15.70155 -15.16712 -14.79602 -14.48715 -14.22600 -14.11937 -13.87919 -13.70059 -13.53604 -13.17859 -12.76111 -12.69088 -12.53017 -12.39966 -12.20162 -11.93108 -11.80048 -11.73014 -11.69829 -11.57470 -11.50487 -11.20835 -11.00206 -10.55622 -10.48930 -10.42999 -10.35698 -9.63131 -9.59761 -9.33195 -9.21118 -9.12670 -8.97594 -8.31509 -5.96159 -3.98578 2.01665 2.44573 2.63093 3.04205 3.32411 3.39739 3.43416 3.82528 4.03530 4.20850 4.36609 4.48158 4.64140 4.65881 4.75837 4.83447 4.86395 5.06057 5.21228 5.25755 5.29875 5.32080 5.32793 5.39444 5.40016 5.42184 5.53711 5.56522 5.61472 5.69283 5.79709 5.82096 6.02801 6.10740 6.12848 6.23298 6.28629 6.52679 6.82183 6.96417 7.00172 7.18364 7.30637 7.65886 7.73528 7.89151 8.05333 8.17222 8.47127 9.09419 9.65213 11.15206 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021475 B = 0.002392 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.527061 B =11704.786850 C =12590.154565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.166 3.834 3 C -0.147 4.147 4 N -0.734 5.734 5 C 0.517 3.483 6 O -0.523 6.523 7 C -0.139 4.139 8 C -0.102 4.102 9 C -0.110 4.110 10 C 0.020 3.980 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.055 3.945 14 N -0.895 5.895 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.534 3.466 20 O -0.526 6.526 21 N -0.619 5.619 22 C 0.092 3.908 23 C -0.134 4.134 24 C -0.134 4.134 25 C 0.102 3.898 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.399 0.601 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -9.356 27.006 28.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.077 3.923 3 C -0.205 4.205 4 N -0.392 5.392 5 C 0.306 3.694 6 O -0.398 6.398 7 C -0.179 4.179 8 C -0.140 4.140 9 C -0.148 4.148 10 C -0.017 4.017 11 C -0.558 4.558 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.534 5.534 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.211 1.211 19 C 0.321 3.679 20 O -0.401 6.401 21 N -0.355 5.355 22 C -0.031 4.031 23 C -0.171 4.171 24 C -0.172 4.172 25 C -0.020 4.020 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.237 0.763 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.095 0.905 48 H 0.088 0.912 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.008 -8.124 27.303 28.557 hybrid contribution 0.632 -0.928 -0.835 1.399 sum 2.639 -9.052 26.468 28.097 Atomic orbital electron populations 1.22310 0.91853 1.03076 1.05202 1.20468 0.96324 0.93531 0.81983 1.22017 1.01460 0.93064 1.03989 1.46499 1.50377 1.37056 1.05317 1.21093 0.80369 0.83814 0.84165 1.90646 1.34385 1.28434 1.86375 1.21822 1.02418 1.00823 0.92823 1.21448 1.00666 1.00019 0.91918 1.21648 0.99579 0.98774 0.94784 1.19098 0.96081 0.95959 0.90609 1.21316 1.27275 1.15907 0.91278 0.92730 1.25045 0.95228 0.95179 0.99157 1.69987 1.33338 1.26706 1.23417 0.86562 0.78645 0.79659 0.83275 1.19789 1.21058 1.21051 1.20367 0.77993 0.80490 0.89025 1.90727 1.45866 1.64972 1.38502 1.48580 1.58147 1.05088 1.23659 1.22364 0.99092 0.89684 0.91939 1.22682 1.03501 0.95255 0.95708 1.22795 1.01070 0.96862 0.96460 1.22284 0.97650 0.90673 0.91397 0.91464 0.87945 0.92178 0.92221 0.89723 0.90904 0.76342 0.89109 0.89136 0.91727 0.91726 0.93504 0.93505 0.96593 0.96598 0.93096 0.90629 0.90753 0.90089 0.89614 0.89564 0.90498 0.91159 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 8.24 37.15 0.31 -1.42 16 2 C 0.17 1.76 0.66 -132.98 -0.09 1.68 16 3 C -0.15 -1.73 7.90 37.16 0.29 -1.43 16 4 N -0.73 -7.07 3.89 -48.69 -0.19 -7.26 16 5 C 0.52 6.43 7.25 -10.99 -0.08 6.35 16 6 O -0.52 -8.33 12.21 5.56 0.07 -8.26 16 7 C -0.14 -1.67 5.70 -27.89 -0.16 -1.83 16 8 C -0.10 -1.73 4.50 -26.73 -0.12 -1.85 16 9 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 10 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 11 C -0.52 -14.80 9.11 -34.44 -0.31 -15.12 16 12 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 13 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 14 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 15 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 C 0.53 5.82 6.63 -10.99 -0.07 5.75 16 20 O -0.53 -7.43 16.23 5.56 0.09 -7.34 16 21 N -0.62 -4.98 3.23 -170.52 -0.55 -5.53 16 22 C 0.09 0.54 5.64 -3.07 -0.02 0.52 16 23 C -0.13 -0.52 6.95 -24.90 -0.17 -0.69 16 24 C -0.13 -0.54 7.08 -24.58 -0.17 -0.72 16 25 C 0.10 0.66 6.94 -2.52 -0.02 0.64 16 26 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.10 1.28 5.82 -51.93 -0.30 0.98 16 28 H 0.06 0.54 5.90 -51.93 -0.31 0.24 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.11 6.53 -51.93 -0.34 0.77 16 31 H 0.07 0.84 7.93 -51.93 -0.41 0.43 16 32 H 0.40 2.98 6.07 -40.82 -0.25 2.74 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.08 0.47 6.20 -51.93 -0.32 0.15 16 43 H 0.07 0.39 5.52 -51.93 -0.29 0.11 16 44 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.08 0.60 7.98 -51.93 -0.41 0.19 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -34.35 381.94 -8.61 -42.95 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.51 Total: -1.82 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -0.99 Total: -8.60 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.00 Total: -39.39 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.16 Total: -15.60 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.35 -8.61 -42.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813554462.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.061 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds