Wall clock time and date at job start Tue Mar 31 2020 10:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47281 * 2 1 4 4 N 1.46496 * 109.47436 * 239.99796 * 2 1 3 5 5 C 1.34777 * 120.00089 * 55.08758 * 4 2 1 6 6 O 1.21281 * 119.99788 * 0.02562 * 5 4 2 7 7 C 1.50697 * 120.00498 * 180.02562 * 5 4 2 8 8 C 1.52997 * 109.47356 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47128 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47412 * 179.97438 * 9 8 7 11 11 C 1.50697 * 109.47640 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99527 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00358 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99554 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00020 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47310 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46832 * 119.99896 * 15 13 11 18 18 H 1.48495 * 109.47265 * 239.99694 * 15 13 11 19 19 C 1.50703 * 109.47374 * 119.99746 * 2 1 3 20 20 O 1.21278 * 120.00204 * 256.50561 * 19 2 1 21 21 N 1.34772 * 119.99841 * 76.22584 * 19 2 1 22 22 C 1.47025 * 125.65078 * 354.49959 * 21 19 2 23 23 C 1.54314 * 107.27913 * 180.96596 * 22 21 19 24 24 C 1.55156 * 102.86297 * 22.52589 * 23 22 21 25 25 C 1.47431 * 125.64941 * 174.80629 * 21 19 2 26 26 H 1.09008 * 109.47261 * 300.00064 * 1 2 3 27 27 H 1.08996 * 109.47095 * 60.00022 * 1 2 3 28 28 H 1.09002 * 109.47221 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47663 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47190 * 300.00217 * 3 2 1 31 31 H 1.09004 * 109.47429 * 60.00035 * 3 2 1 32 32 H 0.97004 * 120.00658 * 235.08998 * 4 2 1 33 33 H 1.08999 * 109.47331 * 300.00228 * 7 5 4 34 34 H 1.08999 * 109.46663 * 60.00142 * 7 5 4 35 35 H 1.09001 * 109.47200 * 299.99814 * 8 7 5 36 36 H 1.08993 * 109.47286 * 59.99878 * 8 7 5 37 37 H 1.08999 * 109.47240 * 299.99885 * 9 8 7 38 38 H 1.09004 * 109.47365 * 60.00158 * 9 8 7 39 39 H 1.08999 * 109.46970 * 300.00229 * 10 9 8 40 40 H 1.09004 * 109.46582 * 59.99856 * 10 9 8 41 41 H 0.97000 * 119.99169 * 179.97438 * 14 13 11 42 42 H 1.08998 * 109.88054 * 300.51329 * 22 21 19 43 43 H 1.09001 * 109.88080 * 61.67497 * 22 21 19 44 44 H 1.08997 * 110.92484 * 264.11506 * 23 22 21 45 45 H 1.09000 * 110.58772 * 140.78596 * 23 22 21 46 46 H 1.08996 * 111.00523 * 206.22699 * 24 23 22 47 47 H 1.09005 * 111.00397 * 82.37679 * 24 23 22 48 48 H 1.09000 * 110.36152 * 274.67308 * 25 21 19 49 49 H 1.08999 * 110.36700 * 36.88708 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 1.6132 -0.2908 -2.4178 6 8 0.8447 0.6411 -2.5269 7 6 2.1151 -1.0015 -3.6482 8 6 1.5074 -0.3547 -4.8944 9 6 2.0164 -1.0767 -6.1435 10 6 1.4082 -0.4303 -7.3898 11 6 1.9101 -1.1410 -8.6202 12 1 2.5942 -1.9711 -8.5230 13 6 1.4961 -0.7316 -9.8700 14 7 0.6627 0.2789 -9.9882 15 14 2.1177 -1.6131 -11.3951 16 1 3.0365 -2.7086 -10.9937 17 1 0.9668 -2.1816 -12.1418 18 1 2.8434 -0.6504 -12.2620 19 6 2.0323 -0.7104 1.2305 20 8 2.4656 -0.0709 2.1655 21 7 1.9950 -2.0561 1.2942 22 6 1.3896 -2.9449 0.2916 23 6 1.5640 -4.3923 0.7973 24 6 1.7463 -4.2043 2.3266 25 6 2.5488 -2.8804 2.3837 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.6333 -1.4357 -1.1089 33 1 3.2015 -0.9264 -3.6934 34 1 1.8249 -2.0513 -3.6051 35 1 0.4209 -0.4295 -4.8495 36 1 1.7978 0.6950 -4.9373 37 1 3.1030 -1.0023 -6.1888 38 1 1.7256 -2.1263 -6.1005 39 1 0.3218 -0.5050 -7.3444 40 1 1.6987 0.6194 -7.4331 41 1 0.3717 0.5671 -10.8675 42 1 0.3300 -2.7134 0.1827 43 1 1.8976 -2.8248 -0.6652 44 1 2.4478 -4.8544 0.3576 45 1 0.6726 -4.9826 0.5849 46 1 2.3184 -5.0267 2.7560 47 1 0.7826 -4.0987 2.8250 48 1 3.6084 -3.0715 2.2138 49 1 2.4024 -2.3872 3.3447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813554462.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:42 Heat of formation + Delta-G solvation = -108.833412 kcal Electronic energy + Delta-G solvation = -26270.073153 eV Core-core repulsion = 22616.611334 eV Total energy + Delta-G solvation = -3653.461819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.08268 -40.46778 -38.57930 -37.04824 -36.34025 -34.60522 -32.98886 -32.59314 -31.06493 -30.05318 -28.33856 -27.45073 -25.94822 -24.40256 -23.08923 -22.05478 -21.67747 -20.96034 -20.49362 -18.76350 -18.38573 -17.94260 -17.21497 -16.92510 -16.79870 -16.49678 -15.94759 -15.63185 -15.46903 -15.11666 -14.53312 -14.43413 -14.31589 -14.26259 -14.01507 -13.73656 -13.59473 -13.47782 -13.37413 -13.21020 -13.06249 -12.92413 -12.79601 -12.40235 -12.29409 -12.17302 -12.13135 -12.08339 -12.06623 -11.56426 -11.33979 -11.32976 -11.25195 -11.05232 -10.53703 -10.46507 -10.25277 -9.78688 -8.17132 -6.28786 1.16581 1.41845 1.42425 1.55806 1.65127 1.75977 2.14074 2.43353 3.15890 3.15945 3.63053 3.65544 3.75532 3.87922 3.91360 4.06263 4.08702 4.20740 4.25865 4.40356 4.51058 4.58826 4.62672 4.68998 4.72855 4.73740 4.75197 4.83374 4.89528 4.92484 4.94852 4.97113 5.10660 5.12546 5.18780 5.21107 5.24695 5.31560 5.37165 5.39431 5.44294 5.61044 5.82331 5.91518 6.25923 6.27954 6.45900 6.86064 6.90477 7.23501 7.40905 8.95252 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021475 B = 0.002392 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.527061 B =11704.786850 C =12590.154565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.168 3.832 3 C -0.144 4.144 4 N -0.715 5.715 5 C 0.520 3.480 6 O -0.563 6.563 7 C -0.128 4.128 8 C -0.095 4.095 9 C -0.096 4.096 10 C 0.018 3.982 11 C -0.539 4.539 12 H 0.066 0.934 13 C -0.008 4.008 14 N -0.938 5.938 15 Si 0.968 3.032 16 H -0.257 1.257 17 H -0.279 1.279 18 H -0.281 1.281 19 C 0.534 3.466 20 O -0.566 6.566 21 N -0.613 5.613 22 C 0.083 3.917 23 C -0.126 4.126 24 C -0.125 4.125 25 C 0.094 3.906 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.414 0.586 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.058 0.942 38 H 0.063 0.937 39 H -0.014 1.014 40 H -0.017 1.017 41 H 0.262 0.738 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.105 0.895 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.762 -12.716 27.306 30.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.079 3.921 3 C -0.202 4.202 4 N -0.373 5.373 5 C 0.309 3.691 6 O -0.441 6.441 7 C -0.168 4.168 8 C -0.133 4.133 9 C -0.133 4.133 10 C -0.019 4.019 11 C -0.577 4.577 12 H 0.084 0.916 13 C -0.205 4.205 14 N -0.579 5.579 15 Si 0.792 3.208 16 H -0.180 1.180 17 H -0.205 1.205 18 H -0.207 1.207 19 C 0.321 3.679 20 O -0.444 6.444 21 N -0.347 5.347 22 C -0.039 4.039 23 C -0.164 4.164 24 C -0.163 4.163 25 C -0.027 4.027 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.253 0.747 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.004 0.996 40 H 0.001 0.999 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.124 0.876 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.373 -11.557 27.623 30.132 hybrid contribution 0.185 0.130 -0.896 0.924 sum 3.558 -11.427 26.726 29.283 Atomic orbital electron populations 1.22228 0.91633 1.03792 1.04242 1.20368 0.96457 0.92983 0.82334 1.21943 1.01236 0.93978 1.03050 1.46247 1.49917 1.36926 1.04229 1.21142 0.79803 0.83226 0.84921 1.90659 1.36317 1.30249 1.86912 1.21697 1.03389 1.01856 0.89816 1.21232 0.99863 0.98925 0.93277 1.21444 0.99755 0.99182 0.92943 1.19063 0.94564 0.94635 0.93638 1.21795 1.27342 1.16247 0.92277 0.91576 1.26081 0.95325 0.95948 1.03106 1.70140 1.34813 1.28502 1.24441 0.85358 0.78295 0.78642 0.78497 1.18022 1.20509 1.20652 1.20243 0.77824 0.81401 0.88390 1.90709 1.47952 1.66065 1.39650 1.48652 1.57040 1.04455 1.24534 1.22602 0.98898 0.90567 0.91847 1.22703 1.04726 0.93818 0.95166 1.22783 1.00782 0.95841 0.96937 1.22476 0.98617 0.91457 0.90179 0.91248 0.90030 0.90629 0.92411 0.91325 0.91113 0.74655 0.86697 0.85768 0.93405 0.93967 0.92328 0.91864 0.99581 0.99878 0.92917 0.90829 0.89764 0.88785 0.88395 0.87642 0.90744 0.90284 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.24 71.98 0.59 -2.71 16 2 C 0.17 3.48 0.66 2.86 0.00 3.48 16 3 C -0.14 -3.46 7.90 71.98 0.57 -2.89 16 4 N -0.71 -12.52 3.89 -426.35 -1.66 -14.18 16 5 C 0.52 12.25 7.25 87.66 0.64 12.88 16 6 O -0.56 -18.17 12.21 -3.03 -0.04 -18.21 16 7 C -0.13 -2.74 5.70 29.85 0.17 -2.57 16 8 C -0.09 -3.16 4.50 30.59 0.14 -3.03 16 9 C -0.10 -3.71 5.15 30.59 0.16 -3.56 16 10 C 0.02 0.97 4.97 29.85 0.15 1.12 16 11 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 12 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 13 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 14 N -0.94 -58.58 13.29 21.45 0.28 -58.30 16 15 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 16 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 19 C 0.53 11.24 6.63 87.66 0.58 11.82 16 20 O -0.57 -16.08 16.23 -3.02 -0.05 -16.12 16 21 N -0.61 -8.77 3.23 -811.80 -2.63 -11.40 16 22 C 0.08 0.72 5.64 86.72 0.49 1.21 16 23 C -0.13 -0.52 6.95 31.78 0.22 -0.30 16 24 C -0.13 -0.66 7.08 31.99 0.23 -0.43 16 25 C 0.09 1.05 6.94 86.85 0.60 1.66 16 26 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.08 2.09 5.82 -2.39 -0.01 2.08 16 28 H 0.07 1.28 5.90 -2.39 -0.01 1.26 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.88 6.53 -2.38 -0.02 1.86 16 31 H 0.07 1.70 7.93 -2.39 -0.02 1.68 16 32 H 0.41 4.94 6.07 -92.71 -0.56 4.38 16 33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 36 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 39 H -0.01 -0.84 8.14 -2.39 -0.02 -0.85 16 40 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 41 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 42 H 0.07 0.71 6.20 -2.39 -0.01 0.70 16 43 H 0.08 0.57 5.52 -2.39 -0.01 0.56 16 44 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.07 0.45 8.14 -2.38 -0.02 0.44 16 48 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.06 0.93 7.98 -2.39 -0.02 0.91 16 Total: -1.00 -77.59 381.94 3.54 -74.05 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.36 Total: 11.59 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 5.23 Total: -13.76 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -4.00 Total: -83.87 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.09 Total: -34.33 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -77.59 3.54 -74.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813554462.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.780 kcal (2) G-P(sol) polarization free energy of solvation -77.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds