Wall clock time and date at job start Tue Mar 31 2020 09:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47502 * 2 1 4 4 C 1.53004 * 109.47353 * 240.00068 * 2 1 3 5 5 O 1.45198 * 109.46841 * 120.00371 * 2 1 3 6 6 C 1.34638 * 117.00226 * 60.00132 * 5 2 1 7 7 O 1.21507 * 120.00189 * 359.97438 * 6 5 2 8 8 N 1.34784 * 119.99962 * 179.97438 * 6 5 2 9 9 C 1.47644 * 125.80598 * 359.69197 * 8 6 5 10 10 C 1.55234 * 104.72421 * 155.87956 * 9 8 6 11 11 C 1.55324 * 101.55285 * 36.95308 * 10 9 8 12 12 C 1.46257 * 125.80399 * 179.97438 * 8 6 5 13 13 C 1.53899 * 110.86434 * 60.27357 * 12 8 6 14 14 C 1.55092 * 102.75425 * 217.76149 * 13 12 8 15 15 N 1.48594 * 103.31793 * 36.83113 * 14 13 12 16 16 C 1.46896 * 111.00357 * 200.67963 * 15 14 13 17 17 C 1.50707 * 109.46981 * 307.42722 * 16 15 14 18 18 H 1.07996 * 119.99589 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99938 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99853 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99834 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47450 * 0.02562 * 21 19 17 23 23 H 1.48512 * 109.47270 * 119.99987 * 21 19 17 24 24 H 1.48497 * 109.47566 * 239.99845 * 21 19 17 25 25 C 1.48096 * 105.84567 * 321.20900 * 15 14 13 26 26 H 1.08998 * 109.47144 * 299.99721 * 1 2 3 27 27 H 1.08999 * 109.46619 * 59.99987 * 1 2 3 28 28 H 1.08996 * 109.46980 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47145 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47198 * 300.00218 * 3 2 1 31 31 H 1.09006 * 109.46544 * 59.99729 * 3 2 1 32 32 H 1.09005 * 109.46836 * 300.00480 * 4 2 1 33 33 H 1.08999 * 109.46845 * 60.00089 * 4 2 1 34 34 H 1.08994 * 109.47403 * 180.02562 * 4 2 1 35 35 H 1.08997 * 110.36193 * 274.82656 * 9 8 6 36 36 H 1.09003 * 110.36569 * 37.13947 * 9 8 6 37 37 H 1.08999 * 111.20751 * 278.81951 * 10 9 8 38 38 H 1.09000 * 110.90563 * 154.95284 * 10 9 8 39 39 H 1.08997 * 110.75452 * 206.57559 * 11 10 9 40 40 H 1.08996 * 110.91790 * 83.27420 * 11 10 9 41 41 H 1.09001 * 110.75441 * 336.07942 * 13 12 8 42 42 H 1.09006 * 110.75681 * 99.44034 * 13 12 8 43 43 H 1.09000 * 110.64987 * 278.37377 * 14 13 12 44 44 H 1.09002 * 110.78737 * 155.35942 * 14 13 12 45 45 H 1.09000 * 109.46787 * 67.42294 * 16 15 14 46 46 H 1.08994 * 109.47238 * 187.42967 * 16 15 14 47 47 H 0.97001 * 119.99926 * 180.02562 * 20 19 17 48 48 H 1.08993 * 109.99819 * 265.85394 * 25 15 14 49 49 H 1.09000 * 109.99655 * 144.51607 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0139 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0680 -2.6659 2.4166 9 6 2.9245 -2.1453 3.5007 10 6 2.6020 -3.0443 4.7245 11 6 2.4067 -4.4297 4.0499 12 6 1.7522 -4.0637 2.7089 13 6 2.2707 -4.9877 1.5927 14 6 1.1502 -6.0543 1.4829 15 7 -0.0918 -5.2705 1.7094 16 6 -1.1970 -6.1439 2.1258 17 6 -1.3416 -7.2754 1.1408 18 1 -0.6784 -7.3394 0.2909 19 6 -2.3198 -8.2294 1.3255 20 7 -3.1270 -8.1516 2.3608 21 14 -2.4994 -9.6314 0.1043 22 1 -1.4773 -9.4915 -0.9639 23 1 -2.3076 -10.9264 0.8056 24 1 -3.8555 -9.5916 -0.4993 25 6 0.2370 -4.2890 2.7686 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6768 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 3.9762 -2.2335 3.2286 36 1 2.6735 -1.1068 3.7169 37 1 1.6880 -2.7200 5.2220 38 1 3.4382 -3.0647 5.4233 39 1 1.7439 -5.0587 4.6442 40 1 3.3652 -4.9235 3.8904 41 1 2.3761 -4.4404 0.6560 42 1 3.2158 -5.4485 1.8804 43 1 1.2689 -6.8172 2.2524 44 1 1.1433 -6.5077 0.4917 45 1 -0.9870 -6.5486 3.1158 46 1 -2.1225 -5.5690 2.1570 47 1 -3.8150 -8.8229 2.4909 48 1 -0.0427 -4.6859 3.7444 49 1 -0.2867 -3.3512 2.5832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839678190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:48 Heat of formation + Delta-G solvation = -64.615606 kcal Electronic energy + Delta-G solvation = -28000.801513 eV Core-core repulsion = 24349.257122 eV Total energy + Delta-G solvation = -3651.544391 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.91723 -39.47178 -36.59627 -36.09970 -33.98014 -32.79298 -31.43809 -30.61801 -28.45493 -27.45257 -27.33856 -26.68382 -24.52318 -23.15067 -22.25713 -21.78762 -20.05892 -19.96572 -18.71571 -17.34118 -16.44035 -16.15198 -16.06866 -15.54484 -15.03596 -14.72559 -14.43561 -14.33107 -13.86672 -13.59196 -13.41174 -13.23163 -12.84250 -12.65115 -12.54952 -12.30239 -12.21566 -11.93298 -11.88400 -11.82064 -11.66856 -11.37266 -11.32414 -11.22912 -11.18236 -11.05903 -10.77486 -10.65311 -10.54273 -10.35598 -10.22529 -10.19940 -9.74794 -9.61404 -9.04852 -8.47258 -8.40960 -7.11052 -5.98704 -3.99237 2.22198 3.13050 3.33936 3.41221 3.46754 3.95690 4.46750 4.48168 4.57054 4.71298 4.73600 4.83553 4.89837 5.06567 5.16981 5.26247 5.36106 5.38147 5.42024 5.49346 5.57103 5.58399 5.65443 5.66404 5.71179 5.73566 5.84953 5.87651 5.89712 5.93133 6.02441 6.09677 6.15637 6.25151 6.34744 6.40550 6.44989 6.55926 6.72168 6.77399 6.87748 7.30579 7.44467 7.71800 7.83640 8.08555 8.30446 8.60636 8.64902 9.09226 9.65029 11.12896 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.004061 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.748440 B = 6892.919096 C = 7956.713070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.138 3.862 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.370 6.370 6 C 0.659 3.341 7 O -0.530 6.530 8 N -0.594 5.594 9 C 0.105 3.895 10 C -0.133 4.133 11 C -0.121 4.121 12 C 0.174 3.826 13 C -0.130 4.130 14 C 0.060 3.940 15 N -0.500 5.500 16 C 0.184 3.816 17 C -0.508 4.508 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.896 3.104 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.043 3.957 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.077 0.923 45 H -0.009 1.009 46 H 0.030 0.970 47 H 0.260 0.740 48 H 0.040 0.960 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.896 16.815 2.012 22.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.286 6.286 6 C 0.414 3.586 7 O -0.416 6.416 8 N -0.335 5.335 9 C -0.018 4.018 10 C -0.171 4.171 11 C -0.159 4.159 12 C 0.090 3.910 13 C -0.169 4.169 14 C -0.069 4.069 15 N -0.224 5.224 16 C 0.058 3.942 17 C -0.546 4.546 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.210 1.210 25 C -0.087 4.087 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.008 0.992 46 H 0.049 0.951 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.282 16.935 1.205 22.186 hybrid contribution -0.085 -1.131 0.158 1.145 sum 14.197 15.804 1.363 21.288 Atomic orbital electron populations 1.22523 0.93931 1.05657 1.02045 1.21985 0.94428 0.91170 0.82324 1.21839 1.01930 0.92925 1.02864 1.22513 1.01141 1.03999 0.96378 1.86259 1.71920 1.24109 1.46275 1.17515 0.79315 0.80179 0.81638 1.91047 1.39198 1.69589 1.41751 1.47063 1.52965 1.12033 1.21432 1.22373 0.94475 0.98463 0.86524 1.22871 1.02629 0.95006 0.96590 1.22785 1.01575 0.97223 0.94327 1.21312 0.96137 0.78638 0.94901 1.22920 0.98093 0.97117 0.98733 1.22913 0.88556 0.93877 1.01514 1.64916 1.05167 1.14850 1.37491 1.19914 0.89028 0.90829 0.94453 1.21258 1.16068 1.07700 1.09592 0.91789 1.24986 0.95717 0.98233 0.95642 1.69976 1.19701 1.35516 1.28653 0.86464 0.78021 0.81835 0.81253 1.19655 1.21163 1.21019 1.23054 0.92240 0.98649 0.94726 0.92450 0.91427 0.88764 0.91750 0.90348 0.91697 0.88956 0.91403 0.92540 0.91545 0.90539 0.90381 0.89853 0.89405 0.90179 0.90318 0.91771 0.94342 0.90421 0.99170 0.95149 0.93065 0.94149 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.37 37.16 0.31 -2.03 16 2 C 0.14 1.67 1.13 -90.62 -0.10 1.56 16 3 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 4 C -0.18 -2.22 8.37 37.16 0.31 -1.91 16 5 O -0.37 -5.23 9.43 -40.32 -0.38 -5.61 16 6 C 0.66 10.80 7.03 54.06 0.38 11.18 16 7 O -0.53 -10.27 10.26 -19.28 -0.20 -10.47 16 8 N -0.59 -8.73 2.84 -161.36 -0.46 -9.19 16 9 C 0.10 1.12 6.96 -2.23 -0.02 1.10 16 10 C -0.13 -1.26 7.10 -24.32 -0.17 -1.44 16 11 C -0.12 -1.45 6.03 -25.17 -0.15 -1.60 16 12 C 0.17 2.73 0.77 -130.99 -0.10 2.63 16 13 C -0.13 -2.18 6.08 -25.16 -0.15 -2.33 16 14 C 0.06 1.24 5.55 -1.78 -0.01 1.23 16 15 N -0.50 -11.65 5.40 -232.01 -1.25 -12.90 16 16 C 0.18 5.01 4.79 -4.97 -0.02 4.99 16 17 C -0.51 -14.71 8.56 -34.44 -0.29 -15.01 16 18 H 0.06 1.84 6.52 -52.49 -0.34 1.50 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 21 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 25 C 0.04 0.84 5.49 -3.00 -0.02 0.82 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.53 5.88 -51.93 -0.31 1.23 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.42 5.88 -51.93 -0.31 1.11 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.76 8.05 -51.93 -0.42 0.34 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.10 7.32 -51.93 -0.38 0.72 16 40 H 0.08 0.84 7.42 -51.93 -0.39 0.46 16 41 H 0.08 1.45 6.77 -51.93 -0.35 1.10 16 42 H 0.06 0.91 7.39 -51.93 -0.38 0.52 16 43 H 0.04 0.80 8.01 -51.93 -0.42 0.38 16 44 H 0.08 1.69 7.15 -51.93 -0.37 1.32 16 45 H -0.01 -0.27 7.82 -51.93 -0.41 -0.67 16 46 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.04 0.79 6.65 -51.93 -0.35 0.44 16 49 H 0.07 1.44 7.27 -51.93 -0.38 1.06 16 LS Contribution 372.63 15.07 5.62 5.62 Total: -1.00 -32.93 372.63 -9.34 -42.27 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -8.57 Total: -0.13 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 0.19 Total: -0.18 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.97 Total: -48.63 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.58 Total: -16.08 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.93 -9.34 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839678190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.343 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds