Wall clock time and date at job start Tue Mar 31 2020 09:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47502 * 2 1 4 4 C 1.53004 * 109.47353 * 240.00068 * 2 1 3 5 5 O 1.45198 * 109.46841 * 120.00371 * 2 1 3 6 6 C 1.34638 * 117.00226 * 60.00132 * 5 2 1 7 7 O 1.21507 * 120.00189 * 359.97438 * 6 5 2 8 8 N 1.34784 * 119.99962 * 179.97438 * 6 5 2 9 9 C 1.47644 * 125.80598 * 359.69197 * 8 6 5 10 10 C 1.55234 * 104.72421 * 155.87956 * 9 8 6 11 11 C 1.55324 * 101.55285 * 36.95308 * 10 9 8 12 12 C 1.46257 * 125.80399 * 179.97438 * 8 6 5 13 13 C 1.53899 * 110.86434 * 60.27357 * 12 8 6 14 14 C 1.55092 * 102.75425 * 217.76149 * 13 12 8 15 15 N 1.48594 * 103.31793 * 36.83113 * 14 13 12 16 16 C 1.46896 * 111.00357 * 200.67963 * 15 14 13 17 17 C 1.50707 * 109.46981 * 307.42722 * 16 15 14 18 18 H 1.07996 * 119.99589 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99938 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99853 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99834 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47450 * 0.02562 * 21 19 17 23 23 H 1.48512 * 109.47270 * 119.99987 * 21 19 17 24 24 H 1.48497 * 109.47566 * 239.99845 * 21 19 17 25 25 C 1.48096 * 105.84567 * 321.20900 * 15 14 13 26 26 H 1.08998 * 109.47144 * 299.99721 * 1 2 3 27 27 H 1.08999 * 109.46619 * 59.99987 * 1 2 3 28 28 H 1.08996 * 109.46980 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47145 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47198 * 300.00218 * 3 2 1 31 31 H 1.09006 * 109.46544 * 59.99729 * 3 2 1 32 32 H 1.09005 * 109.46836 * 300.00480 * 4 2 1 33 33 H 1.08999 * 109.46845 * 60.00089 * 4 2 1 34 34 H 1.08994 * 109.47403 * 180.02562 * 4 2 1 35 35 H 1.08997 * 110.36193 * 274.82656 * 9 8 6 36 36 H 1.09003 * 110.36569 * 37.13947 * 9 8 6 37 37 H 1.08999 * 111.20751 * 278.81951 * 10 9 8 38 38 H 1.09000 * 110.90563 * 154.95284 * 10 9 8 39 39 H 1.08997 * 110.75452 * 206.57559 * 11 10 9 40 40 H 1.08996 * 110.91790 * 83.27420 * 11 10 9 41 41 H 1.09001 * 110.75441 * 336.07942 * 13 12 8 42 42 H 1.09006 * 110.75681 * 99.44034 * 13 12 8 43 43 H 1.09000 * 110.64987 * 278.37377 * 14 13 12 44 44 H 1.09002 * 110.78737 * 155.35942 * 14 13 12 45 45 H 1.09000 * 109.46787 * 67.42294 * 16 15 14 46 46 H 1.08994 * 109.47238 * 187.42967 * 16 15 14 47 47 H 0.97001 * 119.99926 * 180.02562 * 20 19 17 48 48 H 1.08993 * 109.99819 * 265.85394 * 25 15 14 49 49 H 1.09000 * 109.99655 * 144.51607 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0139 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9509 -2.5095 0.5039 8 7 2.0680 -2.6659 2.4166 9 6 2.9245 -2.1453 3.5007 10 6 2.6020 -3.0443 4.7245 11 6 2.4067 -4.4297 4.0499 12 6 1.7522 -4.0637 2.7089 13 6 2.2707 -4.9877 1.5927 14 6 1.1502 -6.0543 1.4829 15 7 -0.0918 -5.2705 1.7094 16 6 -1.1970 -6.1439 2.1258 17 6 -1.3416 -7.2754 1.1408 18 1 -0.6784 -7.3394 0.2909 19 6 -2.3198 -8.2294 1.3255 20 7 -3.1270 -8.1516 2.3608 21 14 -2.4994 -9.6314 0.1043 22 1 -1.4773 -9.4915 -0.9639 23 1 -2.3076 -10.9264 0.8056 24 1 -3.8555 -9.5916 -0.4993 25 6 0.2370 -4.2890 2.7686 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -1.7489 -1.2493 33 1 1.6768 -0.2074 -2.1392 34 1 3.1300 -0.7216 -1.2490 35 1 3.9762 -2.2335 3.2286 36 1 2.6735 -1.1068 3.7169 37 1 1.6880 -2.7200 5.2220 38 1 3.4382 -3.0647 5.4233 39 1 1.7439 -5.0587 4.6442 40 1 3.3652 -4.9235 3.8904 41 1 2.3761 -4.4404 0.6560 42 1 3.2158 -5.4485 1.8804 43 1 1.2689 -6.8172 2.2524 44 1 1.1433 -6.5077 0.4917 45 1 -0.9870 -6.5486 3.1158 46 1 -2.1225 -5.5690 2.1570 47 1 -3.8150 -8.8229 2.4909 48 1 -0.0427 -4.6859 3.7444 49 1 -0.2867 -3.3512 2.5832 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839678190.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:34:48 Heat of formation + Delta-G solvation = -86.810312 kcal Electronic energy + Delta-G solvation = -28001.763947 eV Core-core repulsion = 24349.257122 eV Total energy + Delta-G solvation = -3652.506825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12672 -40.69418 -38.06321 -37.34960 -35.16523 -34.78776 -32.50620 -32.25484 -29.96479 -28.58752 -28.34656 -28.25230 -25.80563 -24.84654 -23.77589 -22.71781 -21.91268 -21.04765 -19.92821 -18.65952 -18.25275 -17.57163 -17.21078 -16.83243 -16.63989 -16.11473 -15.89391 -15.48305 -15.39098 -14.94126 -14.70417 -14.39374 -14.24373 -14.10174 -13.65918 -13.44793 -13.30335 -13.27219 -13.04819 -12.98273 -12.90315 -12.84280 -12.79600 -12.61759 -12.51592 -12.37308 -12.20330 -12.16917 -12.02124 -11.95389 -11.55970 -11.44252 -11.31566 -11.22146 -10.86678 -10.67136 -9.68777 -9.01361 -8.24853 -6.35014 1.11066 1.37146 1.38790 1.52519 1.88909 2.37717 2.94913 3.08119 3.29819 3.54498 3.60649 3.70499 3.80378 3.83236 3.93494 3.97953 4.17860 4.32317 4.37531 4.40066 4.52791 4.62476 4.64495 4.66567 4.75634 4.77472 4.78415 4.82988 4.85208 4.90299 4.91157 4.99891 5.01270 5.06517 5.10219 5.15291 5.18501 5.29341 5.31735 5.33291 5.38422 5.50592 5.57285 5.61294 5.94595 6.27853 6.51664 6.58766 6.81515 7.35102 7.43983 8.87714 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.004061 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.748440 B = 6892.919096 C = 7956.713070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.130 4.130 4 C -0.178 4.178 5 O -0.365 6.365 6 C 0.653 3.347 7 O -0.570 6.570 8 N -0.596 5.596 9 C 0.100 3.900 10 C -0.121 4.121 11 C -0.117 4.117 12 C 0.179 3.821 13 C -0.115 4.115 14 C 0.061 3.939 15 N -0.521 5.521 16 C 0.202 3.798 17 C -0.528 4.528 18 H 0.061 0.939 19 C 0.003 3.997 20 N -0.933 5.933 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.278 1.278 25 C 0.046 3.954 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.059 0.941 42 H 0.103 0.897 43 H 0.036 0.964 44 H 0.058 0.942 45 H -0.030 1.030 46 H -0.009 1.009 47 H 0.265 0.735 48 H 0.038 0.962 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.611 17.730 2.301 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.187 4.187 4 C -0.235 4.235 5 O -0.280 6.280 6 C 0.408 3.592 7 O -0.458 6.458 8 N -0.337 5.337 9 C -0.021 4.021 10 C -0.158 4.158 11 C -0.155 4.155 12 C 0.094 3.906 13 C -0.154 4.154 14 C -0.068 4.068 15 N -0.245 5.245 16 C 0.075 3.925 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.195 4.195 20 N -0.573 5.573 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.197 1.197 24 H -0.204 1.204 25 C -0.083 4.083 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.055 0.945 44 H 0.077 0.923 45 H -0.012 1.012 46 H 0.009 0.991 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.032 17.885 1.517 24.744 hybrid contribution -0.990 -1.339 0.046 1.666 sum 16.042 16.546 1.563 23.099 Atomic orbital electron populations 1.22465 0.94885 1.03171 1.03267 1.22347 0.93921 0.92956 0.81639 1.21845 1.02526 0.90094 1.04245 1.22445 1.01620 1.01990 0.97469 1.86271 1.71681 1.22841 1.47227 1.17779 0.78965 0.80785 0.81693 1.91042 1.40865 1.70533 1.43370 1.47170 1.53059 1.11604 1.21865 1.22685 0.94808 0.99085 0.85507 1.22892 1.03943 0.92552 0.96445 1.22798 1.02073 0.98878 0.91792 1.21250 0.93082 0.79487 0.96828 1.22828 0.98142 0.95888 0.98557 1.22869 0.88813 0.94836 1.00237 1.64727 1.05663 1.14988 1.39109 1.19521 0.89087 0.90502 0.93343 1.21502 1.16604 1.08629 1.09881 0.92115 1.25934 0.94989 1.00992 0.97581 1.70098 1.20187 1.36665 1.30371 0.85308 0.78142 0.78321 0.78690 1.18959 1.19740 1.20396 1.23020 0.95679 0.96361 0.93280 0.92152 0.89264 0.92991 0.90766 0.88139 0.91153 0.92759 0.89341 0.91594 0.89302 0.89652 0.90994 0.86036 0.90213 0.87520 0.92208 0.87901 0.94523 0.92330 1.01197 0.99079 0.92572 0.94381 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.66 8.37 71.98 0.60 -4.06 16 2 C 0.13 2.98 1.13 -10.79 -0.01 2.97 16 3 C -0.13 -1.91 8.85 71.98 0.64 -1.28 16 4 C -0.18 -4.25 8.37 71.98 0.60 -3.65 16 5 O -0.36 -10.09 9.43 -55.47 -0.52 -10.61 16 6 C 0.65 21.73 7.03 129.79 0.91 22.64 16 7 O -0.57 -23.40 10.26 19.82 0.20 -23.19 16 8 N -0.60 -17.06 2.84 -894.82 -2.54 -19.60 16 9 C 0.10 1.84 6.96 86.93 0.60 2.45 16 10 C -0.12 -1.87 7.10 32.16 0.23 -1.64 16 11 C -0.12 -2.52 6.03 31.61 0.19 -2.32 16 12 C 0.18 5.52 0.77 4.27 0.00 5.52 16 13 C -0.12 -3.83 6.08 31.61 0.19 -3.64 16 14 C 0.06 2.59 5.55 86.69 0.48 3.07 16 15 N -0.52 -25.78 5.40 -887.95 -4.79 -30.58 16 16 C 0.20 11.78 4.79 85.56 0.41 12.19 16 17 C -0.53 -31.89 8.56 25.60 0.22 -31.67 16 18 H 0.06 3.63 6.52 -2.91 -0.02 3.61 16 19 C 0.00 0.19 5.46 84.65 0.46 0.65 16 20 N -0.93 -58.18 13.29 21.45 0.28 -57.89 16 21 Si 0.97 46.10 29.54 68.60 2.03 48.13 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 C 0.05 1.90 5.49 86.18 0.47 2.37 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.81 5.88 -2.39 -0.01 1.80 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.05 1.75 5.88 -2.38 -0.01 1.73 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.09 1.45 8.05 -2.39 -0.02 1.43 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.88 7.32 -2.39 -0.02 1.86 16 40 H 0.11 1.78 7.42 -2.39 -0.02 1.76 16 41 H 0.06 2.23 6.77 -2.39 -0.02 2.22 16 42 H 0.10 2.62 7.39 -2.38 -0.02 2.61 16 43 H 0.04 1.56 8.01 -2.39 -0.02 1.54 16 44 H 0.06 2.67 7.15 -2.39 -0.02 2.65 16 45 H -0.03 -1.79 7.82 -2.39 -0.02 -1.81 16 46 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 47 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 48 H 0.04 1.57 6.65 -2.39 -0.02 1.55 16 49 H 0.05 2.05 7.27 -2.39 -0.02 2.03 16 Total: -1.00 -77.21 372.63 1.58 -75.63 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 0.91 Total: 14.52 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 6.01 Total: 3.60 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -7.05 Total: -108.07 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.32 Total: -33.81 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -77.21 1.58 -75.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839678190.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.180 kcal (2) G-P(sol) polarization free energy of solvation -77.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds