Wall clock time and date at job start Tue Mar 31 2020 10:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 C 1.53003 * 109.47224 * 240.00288 * 2 1 3 5 5 O 1.45194 * 109.47311 * 119.99945 * 2 1 3 6 6 C 1.34642 * 116.99941 * 60.00270 * 5 2 1 7 7 O 1.21510 * 120.00002 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99954 * 180.02562 * 6 5 2 9 9 C 1.46507 * 119.99917 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47071 * 179.97438 * 9 8 6 11 11 C 1.54302 * 111.89792 * 299.11299 * 10 9 8 12 12 C 1.56073 * 103.47865 * 211.26192 * 11 10 9 13 13 C 1.55043 * 101.64518 * 41.29897 * 12 11 10 14 14 C 1.54306 * 103.96238 * 319.19245 * 13 12 11 15 15 H 1.09003 * 111.89962 * 147.43502 * 14 13 12 16 16 C 1.54306 * 108.79723 * 272.62766 * 14 13 12 17 17 N 1.48111 * 104.71345 * 137.20124 * 16 14 13 18 18 C 1.36941 * 127.84691 * 140.17557 * 17 16 14 19 19 H 1.08000 * 119.99712 * 344.25315 * 18 17 16 20 20 C 1.38810 * 120.00431 * 164.25099 * 18 17 16 21 21 N 1.31626 * 119.99483 * 350.56010 * 20 18 17 22 22 Si 1.86799 * 120.00384 * 170.56054 * 20 18 17 23 23 H 1.48500 * 109.46895 * 59.99556 * 22 20 18 24 24 H 1.48495 * 109.47225 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46728 * 299.99826 * 22 20 18 26 26 C 1.48111 * 104.31061 * 320.20857 * 17 16 14 27 27 H 1.08997 * 109.47340 * 299.99809 * 1 2 3 28 28 H 1.08997 * 109.47061 * 60.00002 * 1 2 3 29 29 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47541 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47182 * 300.00458 * 3 2 1 32 32 H 1.09004 * 109.46958 * 60.00311 * 3 2 1 33 33 H 1.09000 * 109.46887 * 299.99788 * 4 2 1 34 34 H 1.08999 * 109.46902 * 59.99598 * 4 2 1 35 35 H 1.09003 * 109.46601 * 179.97438 * 4 2 1 36 36 H 0.97003 * 120.00828 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.46601 * 299.98851 * 9 8 6 38 38 H 1.08994 * 109.47544 * 59.99205 * 9 8 6 39 39 H 1.08993 * 110.53275 * 331.18459 * 11 10 9 40 40 H 1.08998 * 110.52804 * 93.94712 * 11 10 9 41 41 H 1.08994 * 111.72261 * 282.98649 * 12 11 10 42 42 H 1.08997 * 110.55337 * 159.09249 * 12 11 10 43 43 H 1.08999 * 110.53250 * 200.57509 * 13 12 11 44 44 H 1.09003 * 110.53412 * 77.81252 * 13 12 11 45 45 H 1.08999 * 110.38917 * 256.00180 * 16 14 13 46 46 H 1.08995 * 110.39322 * 18.27752 * 16 14 13 47 47 H 0.97000 * 119.99620 * 180.02562 * 21 20 18 48 48 H 1.08996 * 110.38698 * 280.98359 * 26 17 16 49 49 H 1.09001 * 110.38819 * 158.60133 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0673 -2.6654 2.4170 9 6 1.6742 -4.0669 2.5830 10 6 2.2742 -4.6149 3.8793 11 6 3.8163 -4.5629 3.8667 12 6 4.2288 -5.7905 4.7377 13 6 3.2240 -6.8683 4.2553 14 6 1.8933 -6.1000 4.1138 15 1 1.2790 -6.4965 3.3054 16 6 1.1661 -6.1103 5.4747 17 7 0.6507 -4.7312 5.6363 18 6 -0.5590 -4.3406 6.1455 19 1 -1.3584 -5.0592 6.2496 20 6 -0.7576 -3.0211 6.5280 21 7 0.2617 -2.1898 6.5779 22 14 -2.4714 -2.4252 6.9721 23 1 -2.9875 -3.2132 8.1201 24 1 -2.4154 -0.9883 7.3425 25 1 -3.3739 -2.6004 5.8059 26 6 1.7405 -3.8705 5.1212 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1301 -0.7207 -1.2494 36 1 2.6269 -2.2366 3.0833 37 1 0.5873 -4.1365 2.6275 38 1 2.0413 -4.6498 1.7383 39 1 4.1932 -4.6435 2.8472 40 1 4.1717 -3.6452 4.3353 41 1 4.1034 -5.5905 5.8018 42 1 5.2539 -6.0885 4.5180 43 1 3.1301 -7.6623 4.9961 44 1 3.5339 -7.2766 3.2933 45 1 0.3424 -6.8241 5.4597 46 1 1.8636 -6.3532 6.2762 47 1 0.1230 -1.2679 6.8455 48 1 2.5271 -3.7659 5.8684 49 1 1.3507 -2.8923 4.8393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844358792.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:13 Heat of formation + Delta-G solvation = -69.288561 kcal Electronic energy + Delta-G solvation = -27814.664578 eV Core-core repulsion = 24162.917552 eV Total energy + Delta-G solvation = -3651.747025 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.51401 -39.49456 -37.01846 -34.47791 -34.19050 -33.68649 -31.41804 -29.94382 -28.44698 -27.39652 -27.31307 -25.92842 -24.67148 -23.84545 -21.90225 -20.89727 -20.05659 -19.46115 -18.32787 -17.51043 -16.78915 -16.36761 -15.92534 -15.39625 -14.77578 -14.64162 -14.38467 -14.20492 -14.02695 -13.67530 -13.36351 -13.31194 -13.18810 -12.48863 -12.43112 -12.13473 -11.85359 -11.82397 -11.77481 -11.74554 -11.36197 -11.21766 -11.14778 -10.97768 -10.82278 -10.62108 -10.50648 -10.37778 -10.20919 -10.14231 -9.89995 -9.84762 -9.78795 -9.73480 -9.56602 -8.69421 -8.61031 -6.82299 -5.77684 -3.10896 2.50415 3.21431 3.39931 3.45090 3.45845 4.45178 4.48610 4.76722 4.80437 4.94676 4.96068 4.98938 5.11484 5.45321 5.46262 5.53182 5.55019 5.64697 5.67093 5.69205 5.76943 5.79751 5.80587 5.90207 5.90959 5.96210 5.98749 6.04746 6.07208 6.15521 6.22458 6.31015 6.36441 6.39591 6.42933 6.55281 6.64388 6.68749 6.74075 6.82606 6.88403 7.02900 7.30598 7.54528 7.72906 7.84988 8.23647 8.75049 9.13653 9.76919 10.54446 11.36263 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010393 B = 0.005333 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.349000 B = 5248.926023 C = 7219.218233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.366 6.366 6 C 0.649 3.351 7 O -0.577 6.577 8 N -0.697 5.697 9 C 0.167 3.833 10 C -0.101 4.101 11 C -0.111 4.111 12 C -0.120 4.120 13 C -0.116 4.116 14 C -0.094 4.094 15 H 0.073 0.927 16 C 0.131 3.869 17 N -0.594 5.594 18 C -0.225 4.225 19 H 0.074 0.926 20 C -0.004 4.004 21 N -0.915 5.915 22 Si 0.908 3.092 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.168 3.832 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.407 0.593 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.043 0.957 46 H 0.025 0.975 47 H 0.253 0.747 48 H 0.023 0.977 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.043 0.698 -11.563 14.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.281 6.281 6 C 0.402 3.598 7 O -0.468 6.468 8 N -0.355 5.355 9 C 0.045 3.955 10 C -0.104 4.104 11 C -0.149 4.149 12 C -0.158 4.158 13 C -0.154 4.154 14 C -0.114 4.114 15 H 0.092 0.908 16 C 0.005 3.995 17 N -0.317 5.317 18 C -0.354 4.354 19 H 0.092 0.908 20 C -0.201 4.201 21 N -0.561 5.561 22 Si 0.738 3.262 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.042 3.958 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.242 0.758 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.042 0.958 47 H 0.063 0.937 48 H 0.041 0.959 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.529 0.707 -11.892 14.093 hybrid contribution -0.689 0.597 0.569 1.075 sum 6.840 1.305 -11.323 13.293 Atomic orbital electron populations 1.22515 0.94112 1.05260 1.02237 1.21972 0.94373 0.91393 0.82311 1.21849 1.02048 0.92870 1.02970 1.22507 1.01292 1.03643 0.96445 1.86307 1.71647 1.24071 1.46101 1.18070 0.78913 0.80236 0.82550 1.90854 1.41456 1.70534 1.43922 1.44777 1.54830 1.12970 1.22902 1.21212 1.00348 0.77693 0.96285 1.22660 0.94245 0.96878 0.96571 1.22603 0.94782 0.98463 0.99076 1.22681 0.97701 0.95380 1.00014 1.22416 0.95227 0.97488 1.00231 1.22763 0.95973 0.93377 0.99310 0.90836 1.21745 0.95517 0.89262 0.92991 1.44900 1.15220 0.99735 1.71891 1.18933 0.87327 0.94282 1.34820 0.90805 1.24839 0.97436 0.97189 1.00599 1.69869 1.28418 1.05004 1.52810 0.86264 0.83929 0.77699 0.78283 1.21034 1.21600 1.21150 1.21632 0.89656 0.95540 0.88955 0.92063 0.91531 0.89228 0.91626 0.90440 0.91411 0.89302 0.91496 0.92394 0.75765 0.90860 0.92327 0.92046 0.91850 0.91042 0.92430 0.91897 0.92379 0.93804 0.95777 0.93652 0.95903 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.37 37.16 0.31 -2.21 16 2 C 0.14 1.82 1.13 -90.62 -0.10 1.72 16 3 C -0.14 -1.43 8.85 37.16 0.33 -1.10 16 4 C -0.18 -2.22 8.37 37.16 0.31 -1.90 16 5 O -0.37 -5.95 9.94 -40.33 -0.40 -6.35 16 6 C 0.65 11.63 8.06 54.05 0.44 12.07 16 7 O -0.58 -11.22 11.88 -19.28 -0.23 -11.45 16 8 N -0.70 -12.01 4.89 -65.28 -0.32 -12.33 16 9 C 0.17 2.94 4.58 -4.04 -0.02 2.92 16 10 C -0.10 -1.76 0.62 -152.03 -0.09 -1.86 16 11 C -0.11 -1.62 5.19 -24.40 -0.13 -1.74 16 12 C -0.12 -1.65 6.80 -24.01 -0.16 -1.81 16 13 C -0.12 -1.58 6.06 -24.97 -0.15 -1.73 16 14 C -0.09 -1.57 3.61 -88.14 -0.32 -1.89 16 15 H 0.07 1.20 7.89 -51.93 -0.41 0.79 16 16 C 0.13 2.65 6.59 -2.47 -0.02 2.64 16 17 N -0.59 -14.71 3.38 -169.02 -0.57 -15.28 16 18 C -0.23 -6.20 10.35 -15.06 -0.16 -6.36 16 19 H 0.07 1.98 7.85 -52.49 -0.41 1.57 16 20 C 0.00 -0.10 5.39 -17.43 -0.09 -0.19 16 21 N -0.91 -26.31 10.89 55.49 0.60 -25.71 16 22 Si 0.91 22.15 29.56 -169.99 -5.03 17.12 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.17 3.77 4.63 -2.47 -0.01 3.76 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.09 1.47 5.88 -51.93 -0.31 1.16 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.30 5.88 -51.93 -0.31 1.00 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.41 6.70 7.83 -40.82 -0.32 6.38 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.82 7.98 -51.93 -0.41 0.40 16 40 H 0.06 0.92 7.82 -51.93 -0.41 0.52 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.82 7.78 -51.93 -0.40 0.42 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.02 0.49 7.61 -51.93 -0.40 0.10 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.02 0.55 7.66 -51.93 -0.40 0.15 16 49 H 0.09 2.24 5.65 -51.93 -0.29 1.95 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -30.46 374.44 -8.86 -39.31 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -8.69 Total: 6.73 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 0.14 Total: 2.31 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.29 Total: -53.32 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.63 Total: -17.80 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.46 -8.86 -39.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844358792.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.976 kcal (2) G-P(sol) polarization free energy of solvation -30.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds