Wall clock time and date at job start Tue Mar 31 2020 10:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47035 * 2 1 4 4 C 1.53003 * 109.47224 * 240.00288 * 2 1 3 5 5 O 1.45194 * 109.47311 * 119.99945 * 2 1 3 6 6 C 1.34642 * 116.99941 * 60.00270 * 5 2 1 7 7 O 1.21510 * 120.00002 * 359.97438 * 6 5 2 8 8 N 1.34770 * 119.99954 * 180.02562 * 6 5 2 9 9 C 1.46507 * 119.99917 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47071 * 179.97438 * 9 8 6 11 11 C 1.54302 * 111.89792 * 299.11299 * 10 9 8 12 12 C 1.56073 * 103.47865 * 211.26192 * 11 10 9 13 13 C 1.55043 * 101.64518 * 41.29897 * 12 11 10 14 14 C 1.54306 * 103.96238 * 319.19245 * 13 12 11 15 15 H 1.09003 * 111.89962 * 147.43502 * 14 13 12 16 16 C 1.54306 * 108.79723 * 272.62766 * 14 13 12 17 17 N 1.48111 * 104.71345 * 137.20124 * 16 14 13 18 18 C 1.36941 * 127.84691 * 140.17557 * 17 16 14 19 19 H 1.08000 * 119.99712 * 344.25315 * 18 17 16 20 20 C 1.38810 * 120.00431 * 164.25099 * 18 17 16 21 21 N 1.31626 * 119.99483 * 350.56010 * 20 18 17 22 22 Si 1.86799 * 120.00384 * 170.56054 * 20 18 17 23 23 H 1.48500 * 109.46895 * 59.99556 * 22 20 18 24 24 H 1.48495 * 109.47225 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46728 * 299.99826 * 22 20 18 26 26 C 1.48111 * 104.31061 * 320.20857 * 17 16 14 27 27 H 1.08997 * 109.47340 * 299.99809 * 1 2 3 28 28 H 1.08997 * 109.47061 * 60.00002 * 1 2 3 29 29 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47541 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47182 * 300.00458 * 3 2 1 32 32 H 1.09004 * 109.46958 * 60.00311 * 3 2 1 33 33 H 1.09000 * 109.46887 * 299.99788 * 4 2 1 34 34 H 1.08999 * 109.46902 * 59.99598 * 4 2 1 35 35 H 1.09003 * 109.46601 * 179.97438 * 4 2 1 36 36 H 0.97003 * 120.00828 * 359.97438 * 8 6 5 37 37 H 1.09000 * 109.46601 * 299.98851 * 9 8 6 38 38 H 1.08994 * 109.47544 * 59.99205 * 9 8 6 39 39 H 1.08993 * 110.53275 * 331.18459 * 11 10 9 40 40 H 1.08998 * 110.52804 * 93.94712 * 11 10 9 41 41 H 1.08994 * 111.72261 * 282.98649 * 12 11 10 42 42 H 1.08997 * 110.55337 * 159.09249 * 12 11 10 43 43 H 1.08999 * 110.53250 * 200.57509 * 13 12 11 44 44 H 1.09003 * 110.53412 * 77.81252 * 13 12 11 45 45 H 1.08999 * 110.38917 * 256.00180 * 16 14 13 46 46 H 1.08995 * 110.39322 * 18.27752 * 16 14 13 47 47 H 0.97000 * 119.99620 * 180.02562 * 21 20 18 48 48 H 1.08996 * 110.38698 * 280.98359 * 26 17 16 49 49 H 1.09001 * 110.38819 * 158.60133 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5040 8 7 2.0673 -2.6654 2.4170 9 6 1.6742 -4.0669 2.5830 10 6 2.2742 -4.6149 3.8793 11 6 3.8163 -4.5629 3.8667 12 6 4.2288 -5.7905 4.7377 13 6 3.2240 -6.8683 4.2553 14 6 1.8933 -6.1000 4.1138 15 1 1.2790 -6.4965 3.3054 16 6 1.1661 -6.1103 5.4747 17 7 0.6507 -4.7312 5.6363 18 6 -0.5590 -4.3406 6.1455 19 1 -1.3584 -5.0592 6.2496 20 6 -0.7576 -3.0211 6.5280 21 7 0.2617 -2.1898 6.5779 22 14 -2.4714 -2.4252 6.9721 23 1 -2.9875 -3.2132 8.1201 24 1 -2.4154 -0.9883 7.3425 25 1 -3.3739 -2.6004 5.8059 26 6 1.7405 -3.8705 5.1212 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1301 -0.7207 -1.2494 36 1 2.6269 -2.2366 3.0833 37 1 0.5873 -4.1365 2.6275 38 1 2.0413 -4.6498 1.7383 39 1 4.1932 -4.6435 2.8472 40 1 4.1717 -3.6452 4.3353 41 1 4.1034 -5.5905 5.8018 42 1 5.2539 -6.0885 4.5180 43 1 3.1301 -7.6623 4.9961 44 1 3.5339 -7.2766 3.2933 45 1 0.3424 -6.8241 5.4597 46 1 1.8636 -6.3532 6.2762 47 1 0.1230 -1.2679 6.8455 48 1 2.5271 -3.7659 5.8684 49 1 1.3507 -2.8923 4.8393 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844358792.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:12 Heat of formation + Delta-G solvation = -87.635211 kcal Electronic energy + Delta-G solvation = -27815.460148 eV Core-core repulsion = 24162.917552 eV Total energy + Delta-G solvation = -3652.542596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84383 -40.91216 -38.29764 -36.10459 -35.73637 -34.82871 -33.30112 -31.34999 -30.00037 -28.35512 -28.27855 -27.72876 -26.13117 -25.41188 -23.28327 -22.50159 -21.30912 -20.79569 -19.68938 -18.91033 -18.75246 -17.60293 -17.26388 -16.73626 -16.65637 -15.99192 -15.64122 -15.53986 -15.35676 -15.31715 -14.91797 -14.65773 -14.39827 -13.92721 -13.52450 -13.33038 -13.24199 -13.09883 -12.90523 -12.86683 -12.84531 -12.80114 -12.69451 -12.43785 -12.31423 -12.18417 -11.88286 -11.70003 -11.61446 -11.56947 -11.37791 -11.36738 -11.26719 -11.21464 -11.06557 -10.67253 -10.11695 -8.83151 -7.89740 -5.23265 1.23719 1.41856 1.44892 1.50269 1.81174 2.47255 3.19441 3.30224 3.60493 3.69531 3.77617 3.78184 3.81823 3.94541 3.96666 4.31549 4.36465 4.45678 4.51580 4.56486 4.62181 4.62940 4.67252 4.73552 4.76984 4.81247 4.82910 4.86926 4.88783 4.98703 5.02120 5.09561 5.11104 5.24357 5.29768 5.30690 5.33158 5.37087 5.40464 5.46827 5.53248 5.58481 5.58909 5.62242 5.78225 6.23416 6.45121 7.05527 7.37184 7.73146 8.51922 9.22689 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010393 B = 0.005333 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2693.349000 B = 5248.926023 C = 7219.218233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.121 3.879 3 C -0.135 4.135 4 C -0.175 4.175 5 O -0.373 6.373 6 C 0.646 3.354 7 O -0.596 6.596 8 N -0.696 5.696 9 C 0.176 3.824 10 C -0.090 4.090 11 C -0.105 4.105 12 C -0.117 4.117 13 C -0.106 4.106 14 C -0.089 4.089 15 H 0.081 0.919 16 C 0.127 3.873 17 N -0.621 5.621 18 C -0.237 4.237 19 H 0.074 0.926 20 C -0.057 4.057 21 N -0.940 5.940 22 Si 0.966 3.034 23 H -0.274 1.274 24 H -0.293 1.293 25 H -0.285 1.285 26 C 0.177 3.823 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.410 0.590 37 H 0.035 0.965 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.043 0.957 46 H 0.026 0.974 47 H 0.247 0.753 48 H 0.001 0.999 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.390 0.311 -13.279 16.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.085 3.915 3 C -0.191 4.191 4 C -0.232 4.232 5 O -0.288 6.288 6 C 0.400 3.600 7 O -0.487 6.487 8 N -0.354 5.354 9 C 0.054 3.946 10 C -0.092 4.092 11 C -0.142 4.142 12 C -0.155 4.155 13 C -0.144 4.144 14 C -0.109 4.109 15 H 0.099 0.901 16 C 0.002 3.998 17 N -0.345 5.345 18 C -0.366 4.366 19 H 0.091 0.909 20 C -0.251 4.251 21 N -0.587 5.587 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.219 1.219 25 H -0.211 1.211 26 C 0.051 3.949 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.245 0.755 37 H 0.053 0.947 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.019 0.981 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.893 0.298 -13.611 16.261 hybrid contribution -1.146 0.718 1.096 1.741 sum 7.747 1.016 -12.515 14.753 Atomic orbital electron populations 1.22485 0.94733 1.03402 1.03248 1.22458 0.94185 0.93022 0.81835 1.21884 1.02607 0.90508 1.04143 1.22440 1.01776 1.02096 0.96903 1.86324 1.71642 1.23077 1.47742 1.18201 0.78663 0.80807 0.82373 1.90848 1.42171 1.71123 1.44586 1.44768 1.54750 1.12969 1.22915 1.21064 0.98083 0.78334 0.97120 1.22502 0.96417 0.96489 0.93761 1.22589 0.91930 0.99038 1.00686 1.22666 0.99509 0.94760 0.98521 1.22398 0.92749 0.97178 1.02039 1.22732 0.97652 0.93376 0.97170 0.90099 1.21942 0.95789 0.86993 0.95102 1.45208 1.15058 1.02141 1.72065 1.19263 0.88693 0.94526 1.34143 0.90868 1.25552 1.00613 0.97467 1.01448 1.70048 1.29911 1.04735 1.54049 0.85339 0.80158 0.76906 0.78100 1.19970 1.21921 1.21134 1.21432 0.88367 0.94650 0.90405 0.93109 0.88453 0.92404 0.90770 0.87491 0.91996 0.92096 0.88756 0.91516 0.75453 0.94667 0.90244 0.89665 0.92260 0.93153 0.89322 0.91004 0.89590 0.93806 0.95631 0.94376 0.98111 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.90 8.37 71.98 0.60 -4.29 16 2 C 0.12 3.10 1.13 -10.79 -0.01 3.08 16 3 C -0.13 -2.44 8.85 71.98 0.64 -1.80 16 4 C -0.18 -3.98 8.37 71.98 0.60 -3.38 16 5 O -0.37 -12.14 9.94 -55.52 -0.55 -12.69 16 6 C 0.65 23.54 8.06 129.79 1.05 24.58 16 7 O -0.60 -23.66 11.88 19.81 0.24 -23.43 16 8 N -0.70 -24.40 4.89 -590.85 -2.89 -27.29 16 9 C 0.18 6.24 4.58 86.38 0.40 6.64 16 10 C -0.09 -3.08 0.62 -50.57 -0.03 -3.12 16 11 C -0.10 -2.83 5.19 32.10 0.17 -2.66 16 12 C -0.12 -2.88 6.80 32.36 0.22 -2.66 16 13 C -0.11 -2.54 6.06 31.74 0.19 -2.35 16 14 C -0.09 -2.86 3.61 -9.19 -0.03 -2.89 16 15 H 0.08 2.50 7.89 -2.39 -0.02 2.48 16 16 C 0.13 5.14 6.59 86.51 0.57 5.71 16 17 N -0.62 -31.64 3.38 -688.66 -2.32 -33.97 16 18 C -0.24 -13.44 10.35 84.03 0.87 -12.57 16 19 H 0.07 4.03 7.85 -2.91 -0.02 4.01 16 20 C -0.06 -3.25 5.39 84.86 0.46 -2.79 16 21 N -0.94 -56.15 10.89 21.65 0.24 -55.91 16 22 Si 0.97 46.69 29.56 68.60 2.03 48.72 16 23 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 26 C 0.18 8.23 4.63 86.51 0.40 8.63 16 27 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.94 5.88 -2.39 -0.01 1.93 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.06 1.76 5.88 -2.39 -0.01 1.74 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.41 13.82 7.83 -92.71 -0.73 13.09 16 37 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.08 1.96 7.98 -2.39 -0.02 1.94 16 40 H 0.06 1.66 7.82 -2.39 -0.02 1.65 16 41 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.64 7.78 -2.39 -0.02 1.62 16 44 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.03 1.03 7.61 -2.39 -0.02 1.02 16 47 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 48 H 0.00 0.05 7.66 -2.39 -0.02 0.03 16 49 H 0.06 2.96 5.65 -2.39 -0.01 2.95 16 Total: -1.00 -69.25 374.44 3.01 -66.23 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.20 Total: 28.21 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 6.08 Total: 10.13 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -4.98 Total: -117.17 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.32 Total: -36.11 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -69.25 3.01 -66.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844358792.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.402 kcal (2) G-P(sol) polarization free energy of solvation -69.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds