Wall clock time and date at job start Tue Mar 31 2020 10:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 C 1.53008 * 109.47305 * 240.00005 * 2 1 3 5 5 O 1.45201 * 109.47008 * 120.00137 * 2 1 3 6 6 C 1.34636 * 117.00358 * 60.00020 * 5 2 1 7 7 O 1.21520 * 119.99370 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00348 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00174 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.27074 * 327.08905 * 9 8 6 11 11 C 1.54595 * 110.39283 * 89.23153 * 9 8 6 12 12 C 1.54945 * 102.91929 * 140.91869 * 11 9 8 13 13 N 1.48534 * 103.22458 * 322.58712 * 12 11 9 14 14 C 1.46898 * 110.99882 * 159.72471 * 13 12 11 15 15 C 1.52999 * 109.47231 * 57.73585 * 14 13 12 16 16 C 1.50696 * 115.55111 * 268.67922 * 15 14 13 17 17 H 1.08006 * 119.99534 * 114.49967 * 16 15 14 18 18 C 1.37870 * 120.00275 * 294.49823 * 16 15 14 19 19 N 1.31514 * 120.00410 * 350.35338 * 18 16 15 20 20 Si 1.86805 * 120.00052 * 170.35536 * 18 16 15 21 21 H 1.48500 * 109.47131 * 59.99712 * 20 18 16 22 22 H 1.48503 * 109.47358 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46702 * 300.00006 * 20 18 16 24 24 C 1.53006 * 117.49384 * 122.97432 * 15 14 13 25 25 C 1.52995 * 59.99794 * 252.50935 * 24 15 14 26 26 C 1.47903 * 105.82422 * 39.20764 * 13 12 11 27 27 H 1.08996 * 109.47095 * 300.00449 * 1 2 3 28 28 H 1.09002 * 109.46618 * 60.00050 * 1 2 3 29 29 H 1.09003 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47442 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47223 * 300.00339 * 3 2 1 32 32 H 1.09002 * 109.47009 * 59.99706 * 3 2 1 33 33 H 1.08991 * 109.46879 * 300.00246 * 4 2 1 34 34 H 1.09004 * 109.46707 * 59.99958 * 4 2 1 35 35 H 1.08997 * 109.46871 * 180.02562 * 4 2 1 36 36 H 0.96997 * 120.00019 * 359.97438 * 8 6 5 37 37 H 1.09002 * 110.72399 * 259.27376 * 11 9 8 38 38 H 1.09000 * 110.72607 * 22.38336 * 11 9 8 39 39 H 1.09002 * 110.66239 * 204.15320 * 12 11 9 40 40 H 1.09000 * 110.66903 * 81.02178 * 12 11 9 41 41 H 1.09001 * 109.47582 * 177.74178 * 14 13 12 42 42 H 1.09005 * 109.46858 * 297.74004 * 14 13 12 43 43 H 0.96998 * 120.00214 * 185.01642 * 19 18 16 44 44 H 1.08993 * 117.49942 * 0.02562 * 24 15 14 45 45 H 1.09005 * 117.49559 * 145.02053 * 24 15 14 46 46 H 1.09004 * 117.50325 * 252.50945 * 25 24 15 47 47 H 1.09006 * 117.49530 * 107.49301 * 25 24 15 48 48 H 1.09002 * 109.91554 * 94.02115 * 26 13 12 49 49 H 1.08993 * 109.91764 * 215.11995 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5039 8 7 2.0672 -2.6654 2.4171 9 6 1.6740 -4.0669 2.5831 10 1 0.6806 -4.2324 2.1661 11 6 2.7032 -4.9992 1.9037 12 6 2.8044 -6.1849 2.8960 13 7 2.7105 -5.5259 4.2238 14 6 2.3100 -6.4860 5.2609 15 6 3.3152 -7.6387 5.3044 16 6 2.9858 -8.8216 4.4308 17 1 3.6239 -9.0703 3.5956 18 6 1.8701 -9.5863 4.6977 19 7 1.2009 -9.4056 5.8154 20 14 1.3087 -10.8791 3.4717 21 1 2.3899 -11.8781 3.2759 22 1 0.0942 -11.5586 3.9900 23 1 0.9955 -10.2280 2.1743 24 6 4.0140 -7.9166 6.6369 25 6 4.7922 -7.2816 5.4828 26 6 1.7000 -4.4565 4.0727 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7216 -1.2490 36 1 2.6267 -2.2366 3.0833 37 1 2.3365 -5.3375 0.9346 38 1 3.6656 -4.4987 1.7971 39 1 3.7606 -6.6969 2.7873 40 1 1.9765 -6.8791 2.7517 41 1 2.2878 -5.9865 6.2295 42 1 1.3188 -6.8768 5.0309 43 1 0.4603 -9.9912 6.0373 44 1 3.7573 -7.2786 7.4824 45 1 4.2355 -8.9554 6.8819 46 1 5.5258 -7.9025 4.9685 47 1 5.0478 -6.2255 5.5691 48 1 0.7206 -4.8255 4.3772 49 1 1.9774 -3.5950 4.6801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878083492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:01 Heat of formation + Delta-G solvation = -53.542397 kcal Electronic energy + Delta-G solvation = -26803.347584 eV Core-core repulsion = 23152.283364 eV Total energy + Delta-G solvation = -3651.064220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82571 -38.92076 -37.24630 -36.03977 -34.44065 -33.58597 -32.00838 -30.21303 -28.11969 -27.62628 -27.55955 -25.73966 -24.65736 -22.74539 -21.02457 -20.82619 -20.36444 -20.06273 -18.78379 -18.23548 -16.77587 -16.21787 -16.12696 -15.71219 -15.00502 -14.63168 -14.52999 -14.45326 -14.12689 -13.76928 -13.62466 -13.12916 -12.81452 -12.74570 -12.59436 -12.28167 -12.09056 -12.07830 -11.96848 -11.63172 -11.49029 -11.36888 -11.34971 -11.19197 -10.92499 -10.81212 -10.67829 -10.50762 -10.44298 -10.39956 -10.08902 -10.05367 -9.32032 -9.05923 -8.87357 -8.45868 -8.12169 -7.58931 -6.05466 -4.09047 2.15083 2.85304 3.27750 3.33581 3.36318 4.11023 4.37675 4.51715 4.55637 4.64046 4.70199 4.83679 5.10371 5.18987 5.23816 5.32012 5.36475 5.42844 5.46723 5.55171 5.60223 5.66185 5.71760 5.75705 5.77063 5.92993 6.04232 6.10662 6.12712 6.18276 6.26550 6.40776 6.47349 6.54648 6.58613 6.68618 6.74446 6.85038 6.89196 6.97213 7.16009 7.39388 7.46498 7.53303 7.72980 7.87700 7.91744 8.40498 8.46610 8.90776 9.53799 11.02152 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.002970 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.164133 B = 9426.807395 C =10029.906054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.367 6.367 6 C 0.649 3.351 7 O -0.570 6.570 8 N -0.698 5.698 9 C 0.153 3.847 10 H 0.095 0.905 11 C -0.139 4.139 12 C 0.056 3.944 13 N -0.511 5.511 14 C 0.094 3.906 15 C 0.053 3.947 16 C -0.493 4.493 17 H 0.059 0.941 18 C 0.071 3.929 19 N -0.878 5.878 20 Si 0.883 3.117 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.175 4.175 25 C -0.194 4.194 26 C 0.028 3.972 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.406 0.594 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.048 0.952 43 H 0.261 0.739 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.053 0.947 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.305 18.694 -8.924 20.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.282 6.282 6 C 0.402 3.598 7 O -0.460 6.460 8 N -0.356 5.356 9 C 0.049 3.951 10 H 0.113 0.887 11 C -0.178 4.178 12 C -0.072 4.072 13 N -0.235 5.235 14 C -0.034 4.034 15 C 0.052 3.948 16 C -0.531 4.531 17 H 0.077 0.923 18 C -0.132 4.132 19 N -0.514 5.514 20 Si 0.711 3.289 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.201 1.201 24 C -0.214 4.214 25 C -0.231 4.231 26 C -0.101 4.101 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.241 0.759 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.217 18.671 -9.129 20.784 hybrid contribution -0.941 -0.954 -0.422 1.405 sum -0.725 17.717 -9.551 20.140 Atomic orbital electron populations 1.22519 0.94090 1.05164 1.02305 1.22025 0.94303 0.91441 0.82279 1.21857 1.02246 0.92664 1.02990 1.22516 1.01558 1.03646 0.96364 1.86298 1.71673 1.23942 1.46327 1.18131 0.78898 0.80279 0.82517 1.90892 1.41375 1.70491 1.43223 1.44972 1.54968 1.12373 1.23317 1.21920 0.99324 0.77456 0.96367 0.88739 1.23044 0.98948 0.96841 0.98969 1.23066 1.03170 0.94129 0.86820 1.64902 1.41443 1.11233 1.05959 1.21826 0.98699 0.90854 0.91973 1.18724 0.87448 0.93493 0.95125 1.20464 1.08805 1.11128 1.12675 0.92332 1.24963 0.96284 0.96891 0.95063 1.69978 1.21374 1.37917 1.22153 0.86797 0.78245 0.81862 0.81986 1.20262 1.21354 1.20066 1.22723 1.07172 0.99234 0.92238 1.22744 0.97151 0.98547 1.04655 1.23099 0.96116 0.97241 0.93623 0.92242 0.91295 0.89272 0.91485 0.90262 0.91529 0.89244 0.91306 0.92189 0.75856 0.91068 0.90857 0.89393 0.92568 0.93563 0.93329 0.92963 0.92164 0.90604 0.91230 0.90936 0.92857 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 2 C 0.14 1.38 1.13 -90.62 -0.10 1.28 16 3 C -0.14 -1.02 8.85 37.16 0.33 -0.69 16 4 C -0.18 -1.85 8.37 37.16 0.31 -1.54 16 5 O -0.37 -4.51 9.94 -40.31 -0.40 -4.91 16 6 C 0.65 8.98 8.06 54.05 0.44 9.41 16 7 O -0.57 -9.10 11.53 -19.29 -0.22 -9.32 16 8 N -0.70 -8.86 5.07 -57.40 -0.29 -9.16 16 9 C 0.15 2.19 3.34 -66.57 -0.22 1.97 16 10 H 0.09 1.45 7.56 -51.93 -0.39 1.06 16 11 C -0.14 -2.11 6.78 -24.87 -0.17 -2.28 16 12 C 0.06 1.03 5.01 -1.89 -0.01 1.02 16 13 N -0.51 -9.35 5.13 -230.45 -1.18 -10.54 16 14 C 0.09 2.04 4.78 -3.83 -0.02 2.02 16 15 C 0.05 1.24 0.79 -155.66 -0.12 1.12 16 16 C -0.49 -12.75 7.35 -34.44 -0.25 -13.00 16 17 H 0.06 1.52 7.83 -52.48 -0.41 1.11 16 18 C 0.07 1.88 5.16 -17.82 -0.09 1.79 16 19 N -0.88 -24.14 12.85 55.43 0.71 -23.42 16 20 Si 0.88 20.58 29.55 -169.99 -5.02 15.55 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.18 -4.05 9.88 -26.73 -0.26 -4.31 16 25 C -0.19 -4.16 9.71 -26.74 -0.26 -4.42 16 26 C 0.03 0.43 6.46 -2.75 -0.02 0.41 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.11 5.88 -51.93 -0.31 0.81 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.41 4.42 8.47 -40.82 -0.35 4.07 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.08 8.06 -51.93 -0.42 0.67 16 39 H 0.09 1.71 7.78 -51.93 -0.40 1.31 16 40 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 41 H 0.05 0.99 7.87 -51.93 -0.41 0.58 16 42 H 0.05 1.18 7.26 -51.93 -0.38 0.81 16 43 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 44 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 45 H 0.08 1.84 8.14 -51.93 -0.42 1.42 16 46 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 47 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 48 H 0.05 0.85 7.66 -51.93 -0.40 0.45 16 49 H 0.08 1.04 7.66 -51.93 -0.40 0.64 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -28.11 384.97 -9.52 -37.63 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.77 Total: 7.10 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.14 Total: -8.72 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.76 Total: -43.12 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.62 Total: -14.24 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.11 -9.52 -37.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878083492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.917 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds