Wall clock time and date at job start Tue Mar 31 2020 10:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 C 1.53008 * 109.47305 * 240.00005 * 2 1 3 5 5 O 1.45201 * 109.47008 * 120.00137 * 2 1 3 6 6 C 1.34636 * 117.00358 * 60.00020 * 5 2 1 7 7 O 1.21520 * 119.99370 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00348 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00174 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.27074 * 327.08905 * 9 8 6 11 11 C 1.54595 * 110.39283 * 89.23153 * 9 8 6 12 12 C 1.54945 * 102.91929 * 140.91869 * 11 9 8 13 13 N 1.48534 * 103.22458 * 322.58712 * 12 11 9 14 14 C 1.46898 * 110.99882 * 159.72471 * 13 12 11 15 15 C 1.52999 * 109.47231 * 57.73585 * 14 13 12 16 16 C 1.50696 * 115.55111 * 268.67922 * 15 14 13 17 17 H 1.08006 * 119.99534 * 114.49967 * 16 15 14 18 18 C 1.37870 * 120.00275 * 294.49823 * 16 15 14 19 19 N 1.31514 * 120.00410 * 350.35338 * 18 16 15 20 20 Si 1.86805 * 120.00052 * 170.35536 * 18 16 15 21 21 H 1.48500 * 109.47131 * 59.99712 * 20 18 16 22 22 H 1.48503 * 109.47358 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46702 * 300.00006 * 20 18 16 24 24 C 1.53006 * 117.49384 * 122.97432 * 15 14 13 25 25 C 1.52995 * 59.99794 * 252.50935 * 24 15 14 26 26 C 1.47903 * 105.82422 * 39.20764 * 13 12 11 27 27 H 1.08996 * 109.47095 * 300.00449 * 1 2 3 28 28 H 1.09002 * 109.46618 * 60.00050 * 1 2 3 29 29 H 1.09003 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47442 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47223 * 300.00339 * 3 2 1 32 32 H 1.09002 * 109.47009 * 59.99706 * 3 2 1 33 33 H 1.08991 * 109.46879 * 300.00246 * 4 2 1 34 34 H 1.09004 * 109.46707 * 59.99958 * 4 2 1 35 35 H 1.08997 * 109.46871 * 180.02562 * 4 2 1 36 36 H 0.96997 * 120.00019 * 359.97438 * 8 6 5 37 37 H 1.09002 * 110.72399 * 259.27376 * 11 9 8 38 38 H 1.09000 * 110.72607 * 22.38336 * 11 9 8 39 39 H 1.09002 * 110.66239 * 204.15320 * 12 11 9 40 40 H 1.09000 * 110.66903 * 81.02178 * 12 11 9 41 41 H 1.09001 * 109.47582 * 177.74178 * 14 13 12 42 42 H 1.09005 * 109.46858 * 297.74004 * 14 13 12 43 43 H 0.96998 * 120.00214 * 185.01642 * 19 18 16 44 44 H 1.08993 * 117.49942 * 0.02562 * 24 15 14 45 45 H 1.09005 * 117.49559 * 145.02053 * 24 15 14 46 46 H 1.09004 * 117.50325 * 252.50945 * 25 24 15 47 47 H 1.09006 * 117.49530 * 107.49301 * 25 24 15 48 48 H 1.09002 * 109.91554 * 94.02115 * 26 13 12 49 49 H 1.08993 * 109.91764 * 215.11995 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5039 8 7 2.0672 -2.6654 2.4171 9 6 1.6740 -4.0669 2.5831 10 1 0.6806 -4.2324 2.1661 11 6 2.7032 -4.9992 1.9037 12 6 2.8044 -6.1849 2.8960 13 7 2.7105 -5.5259 4.2238 14 6 2.3100 -6.4860 5.2609 15 6 3.3152 -7.6387 5.3044 16 6 2.9858 -8.8216 4.4308 17 1 3.6239 -9.0703 3.5956 18 6 1.8701 -9.5863 4.6977 19 7 1.2009 -9.4056 5.8154 20 14 1.3087 -10.8791 3.4717 21 1 2.3899 -11.8781 3.2759 22 1 0.0942 -11.5586 3.9900 23 1 0.9955 -10.2280 2.1743 24 6 4.0140 -7.9166 6.6369 25 6 4.7922 -7.2816 5.4828 26 6 1.7000 -4.4565 4.0727 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7488 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7216 -1.2490 36 1 2.6267 -2.2366 3.0833 37 1 2.3365 -5.3375 0.9346 38 1 3.6656 -4.4987 1.7971 39 1 3.7606 -6.6969 2.7873 40 1 1.9765 -6.8791 2.7517 41 1 2.2878 -5.9865 6.2295 42 1 1.3188 -6.8768 5.0309 43 1 0.4603 -9.9912 6.0373 44 1 3.7573 -7.2786 7.4824 45 1 4.2355 -8.9554 6.8819 46 1 5.5258 -7.9025 4.9685 47 1 5.0478 -6.2255 5.5691 48 1 0.7206 -4.8255 4.3772 49 1 1.9774 -3.5950 4.6801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878083492.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:00 Heat of formation + Delta-G solvation = -70.774687 kcal Electronic energy + Delta-G solvation = -26804.094832 eV Core-core repulsion = 23152.283364 eV Total energy + Delta-G solvation = -3651.811468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.84285 -40.27323 -38.52244 -37.51079 -35.51517 -34.63094 -34.02272 -31.61645 -29.46627 -28.33240 -28.26015 -27.65608 -26.30429 -23.80093 -22.78990 -22.33208 -21.60023 -21.03747 -20.59066 -19.27077 -18.08947 -17.77739 -17.13835 -16.86215 -16.55680 -16.36639 -15.78299 -15.48597 -15.33709 -15.32028 -14.77478 -14.47464 -14.38201 -13.87801 -13.59273 -13.31874 -13.13544 -13.12948 -12.92090 -12.87232 -12.82944 -12.77938 -12.74726 -12.56844 -12.39688 -12.36902 -12.27204 -12.10373 -11.90118 -11.77966 -11.35593 -11.17541 -11.06666 -10.80910 -10.39093 -10.18618 -9.96114 -9.18166 -8.08685 -6.15873 1.17030 1.39994 1.42749 1.48145 1.78188 2.42332 3.09146 3.16843 3.20831 3.54746 3.77387 3.78867 3.79445 3.83947 3.98266 4.15997 4.33064 4.42651 4.49628 4.54441 4.64397 4.65883 4.69287 4.74315 4.77429 4.79742 4.83491 4.88529 4.91276 4.97196 5.01305 5.08017 5.11544 5.15050 5.21604 5.28457 5.31598 5.33377 5.34231 5.43673 5.61768 5.64797 5.71364 5.81920 6.17045 6.25504 6.45516 6.47845 6.89605 7.37666 7.48852 8.98367 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.022536 B = 0.002970 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.164133 B = 9426.807395 C =10029.906054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.124 3.876 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.368 6.368 6 C 0.648 3.352 7 O -0.594 6.594 8 N -0.688 5.688 9 C 0.166 3.834 10 H 0.085 0.915 11 C -0.126 4.126 12 C 0.060 3.940 13 N -0.506 5.506 14 C 0.109 3.891 15 C 0.031 3.969 16 C -0.499 4.499 17 H 0.051 0.949 18 C 0.029 3.971 19 N -0.905 5.905 20 Si 0.936 3.064 21 H -0.274 1.274 22 H -0.288 1.288 23 H -0.272 1.272 24 C -0.183 4.183 25 C -0.167 4.167 26 C 0.031 3.969 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.417 0.583 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.027 0.973 41 H 0.049 0.951 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.091 0.909 48 H 0.046 0.954 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.957 21.003 -9.854 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 C -0.192 4.192 4 C -0.238 4.238 5 O -0.282 6.282 6 C 0.401 3.599 7 O -0.485 6.485 8 N -0.348 5.348 9 C 0.061 3.939 10 H 0.103 0.897 11 C -0.165 4.165 12 C -0.068 4.068 13 N -0.230 5.230 14 C -0.019 4.019 15 C 0.030 3.970 16 C -0.537 4.537 17 H 0.069 0.931 18 C -0.171 4.171 19 N -0.543 5.543 20 Si 0.762 3.238 21 H -0.199 1.199 22 H -0.214 1.214 23 H -0.197 1.197 24 C -0.221 4.221 25 C -0.205 4.205 26 C -0.098 4.098 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.255 0.745 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.067 0.933 42 H 0.034 0.966 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.110 0.890 48 H 0.064 0.936 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.892 21.005 -10.060 23.307 hybrid contribution -1.125 -1.623 -0.167 1.982 sum -0.233 19.382 -10.227 21.916 Atomic orbital electron populations 1.22478 0.94092 1.03584 1.03595 1.22418 0.94532 0.92774 0.81487 1.21881 1.02453 0.90514 1.04341 1.22477 1.01645 1.02186 0.97460 1.86315 1.71566 1.22910 1.47428 1.18234 0.78570 0.80790 0.82288 1.90898 1.42364 1.71142 1.44095 1.44768 1.54949 1.11604 1.23491 1.21610 0.98586 0.78307 0.95404 0.89721 1.22922 0.99787 0.95688 0.98116 1.22913 1.01233 0.94814 0.87844 1.64880 1.42246 1.10678 1.05170 1.21513 0.96423 0.90894 0.93065 1.18820 0.89256 0.93737 0.95179 1.20689 1.08592 1.11811 1.12568 0.93102 1.25546 0.96511 0.98775 0.96289 1.70073 1.21841 1.38844 1.23528 0.85959 0.77717 0.79869 0.80222 1.19924 1.21374 1.19713 1.22675 1.08051 0.98581 0.92787 1.22704 0.95701 0.99385 1.02667 1.23134 0.95050 0.96886 0.94697 0.91898 0.89091 0.92179 0.91176 0.87963 0.91136 0.92163 0.89090 0.91954 0.74495 0.90979 0.89740 0.90686 0.95433 0.93278 0.96636 0.93234 0.91113 0.92550 0.91211 0.89050 0.93576 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 8.37 71.98 0.60 -2.70 16 2 C 0.12 2.27 1.13 -10.79 -0.01 2.26 16 3 C -0.13 -1.55 8.85 71.98 0.64 -0.91 16 4 C -0.18 -3.35 8.37 71.98 0.60 -2.75 16 5 O -0.37 -8.40 9.94 -55.45 -0.55 -8.95 16 6 C 0.65 17.17 8.06 129.79 1.05 18.22 16 7 O -0.59 -18.79 11.53 19.78 0.23 -18.56 16 8 N -0.69 -16.30 5.07 -565.93 -2.87 -19.16 16 9 C 0.17 4.57 3.34 45.87 0.15 4.72 16 10 H 0.08 2.57 7.56 -2.39 -0.02 2.55 16 11 C -0.13 -3.71 6.78 31.80 0.22 -3.50 16 12 C 0.06 2.20 5.01 86.65 0.43 2.63 16 13 N -0.51 -18.11 5.13 -883.00 -4.53 -22.63 16 14 C 0.11 4.76 4.78 86.30 0.41 5.17 16 15 C 0.03 1.45 0.79 -52.93 -0.04 1.41 16 16 C -0.50 -26.15 7.35 25.60 0.19 -25.97 16 17 H 0.05 2.68 7.83 -2.91 -0.02 2.66 16 18 C 0.03 1.56 5.16 84.65 0.44 2.00 16 19 N -0.91 -50.74 12.85 21.44 0.28 -50.47 16 20 Si 0.94 42.82 29.55 68.60 2.03 44.85 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 24 C -0.18 -8.39 9.88 30.59 0.30 -8.09 16 25 C -0.17 -6.99 9.71 30.59 0.30 -6.69 16 26 C 0.03 0.91 6.46 86.45 0.56 1.47 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.42 8.02 8.47 -92.71 -0.79 7.24 16 37 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 2.33 8.06 -2.39 -0.02 2.31 16 39 H 0.07 2.92 7.78 -2.39 -0.02 2.90 16 40 H 0.03 1.16 7.72 -2.39 -0.02 1.14 16 41 H 0.05 2.08 7.87 -2.39 -0.02 2.06 16 42 H 0.02 0.77 7.26 -2.38 -0.02 0.75 16 43 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 44 H 0.07 3.06 8.03 -2.39 -0.02 3.04 16 45 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 46 H 0.07 2.90 8.14 -2.38 -0.02 2.88 16 47 H 0.09 3.47 8.14 -2.38 -0.02 3.46 16 48 H 0.05 1.45 7.66 -2.39 -0.02 1.43 16 49 H 0.10 2.50 7.66 -2.39 -0.02 2.48 16 Total: -1.00 -60.93 384.97 0.55 -60.38 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.13 Total: 27.27 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 5.83 Total: -12.73 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -7.12 Total: -92.27 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.32 Total: -27.50 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -60.93 0.55 -60.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878083492.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.399 kcal (2) G-P(sol) polarization free energy of solvation -60.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds