Wall clock time and date at job start Tue Mar 31 2020 09:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46901 * 110.99546 * 2 1 4 4 C 1.53000 * 109.47199 * 288.75847 * 3 2 1 5 5 C 1.50694 * 115.55407 * 302.76615 * 4 3 2 6 6 H 1.07993 * 120.00143 * 143.28186 * 5 4 3 7 7 C 1.37881 * 119.99573 * 323.27949 * 5 4 3 8 8 N 1.31511 * 119.99734 * 168.96313 * 7 5 4 9 9 Si 1.86796 * 120.00285 * 348.95748 * 7 5 4 10 10 H 1.48497 * 109.47073 * 95.56392 * 9 7 5 11 11 H 1.48500 * 109.47279 * 215.57028 * 9 7 5 12 12 H 1.48508 * 109.46981 * 335.56984 * 9 7 5 13 13 C 1.53005 * 117.49450 * 157.08731 * 4 3 2 14 14 C 1.53003 * 117.49348 * 88.43542 * 4 3 2 15 15 C 1.46900 * 111.00043 * 123.95328 * 2 1 3 16 16 C 1.53500 * 114.20393 * 65.45893 * 15 2 1 17 17 N 1.47066 * 87.98317 * 220.34438 * 16 15 2 18 18 C 1.34779 * 136.05393 * 207.08385 * 17 16 15 19 19 O 1.21502 * 120.00050 * 0.02562 * 18 17 16 20 20 O 1.34637 * 119.99533 * 179.72432 * 18 17 16 21 21 C 1.45201 * 116.99567 * 180.27957 * 20 18 17 22 22 C 1.52992 * 109.47599 * 60.00355 * 21 20 18 23 23 C 1.53004 * 109.46820 * 180.02562 * 21 20 18 24 24 C 1.52998 * 109.46878 * 299.99816 * 21 20 18 25 25 C 1.47063 * 87.88439 * 27.34280 * 17 16 15 26 26 H 1.09004 * 109.47029 * 303.99634 * 1 2 3 27 27 H 1.08997 * 109.47360 * 63.99664 * 1 2 3 28 28 H 1.08998 * 109.47004 * 183.99716 * 1 2 3 29 29 H 1.08995 * 109.47469 * 48.76484 * 3 2 1 30 30 H 1.09002 * 109.46644 * 168.76423 * 3 2 1 31 31 H 0.97004 * 120.00115 * 180.02562 * 8 7 5 32 32 H 1.08995 * 117.50150 * 0.02562 * 13 4 3 33 33 H 1.09005 * 117.49312 * 145.02514 * 13 4 3 34 34 H 1.09004 * 117.49715 * 214.97649 * 14 4 3 35 35 H 1.09001 * 117.50277 * 359.97438 * 14 4 3 36 36 H 1.08997 * 113.28107 * 198.52307 * 15 2 1 37 37 H 1.09005 * 113.46437 * 105.56482 * 16 15 2 38 38 H 1.09001 * 113.46755 * 335.12322 * 16 15 2 39 39 H 1.09000 * 109.47350 * 59.99144 * 22 21 20 40 40 H 1.08992 * 109.47625 * 180.02562 * 22 21 20 41 41 H 1.09006 * 109.46652 * 300.00081 * 22 21 20 42 42 H 1.09002 * 109.47581 * 59.99751 * 23 21 20 43 43 H 1.08997 * 109.47097 * 180.02562 * 23 21 20 44 44 H 1.09005 * 109.46907 * 299.99651 * 23 21 20 45 45 H 1.08999 * 109.47137 * 60.00831 * 24 21 20 46 46 H 1.09007 * 109.47154 * 180.02562 * 24 21 20 47 47 H 1.09002 * 109.47238 * 300.00075 * 24 21 20 48 48 H 1.09000 * 113.46751 * 87.44150 * 25 17 16 49 49 H 1.09000 * 113.46845 * 217.87378 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7451 2.0138 -1.3659 5 6 2.3271 1.2795 -2.5461 6 1 1.7879 1.2468 -3.4811 7 6 3.5483 0.6495 -2.4319 8 7 3.9574 -0.1678 -3.3776 9 14 4.6215 0.9568 -0.9343 10 1 4.3883 -0.1123 0.0696 11 1 6.0501 0.9522 -1.3397 12 1 4.2793 2.2750 -0.3421 13 6 1.7098 3.5421 -1.4319 14 6 0.4139 2.7395 -1.5718 15 6 1.9955 -0.7660 1.1376 16 6 1.6782 -2.2669 1.0865 17 7 1.4251 -2.2098 2.5341 18 6 1.4903 -3.0749 3.5655 19 8 1.8340 -4.2244 3.3735 20 8 1.1805 -2.6637 4.8096 21 6 1.2791 -3.6477 5.8727 22 6 2.7163 -4.1655 5.9569 23 6 0.8907 -3.0010 7.2038 24 6 0.3334 -4.8137 5.5776 25 6 1.0632 -0.7951 2.3598 26 1 -0.3633 0.5746 0.8520 27 1 -0.3634 0.4505 -0.9236 28 1 -0.3633 -1.0252 0.0716 29 1 1.4932 1.9534 0.7728 30 1 3.0666 1.3495 0.2002 31 1 4.8163 -0.6113 -3.2972 32 1 1.8653 4.0897 -0.5025 33 1 2.1074 4.0163 -2.3293 34 1 -0.0406 2.6861 -2.5612 35 1 -0.2836 2.7589 -0.7345 36 1 3.0362 -0.5367 1.3666 37 1 2.5368 -2.8833 0.8199 38 1 0.7905 -2.5032 0.4996 39 1 3.3900 -3.3348 6.1670 40 1 2.7901 -4.9045 6.7546 41 1 2.9925 -4.6263 5.0085 42 1 -0.1334 -2.6324 7.1436 43 1 0.9651 -3.7395 8.0020 44 1 1.5641 -2.1701 7.4142 45 1 0.6097 -5.2746 4.6293 46 1 0.4070 -5.5522 6.3759 47 1 -0.6906 -4.4448 5.5177 48 1 0.0134 -0.6433 2.1087 49 1 1.3977 -0.1574 3.1781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878631108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:37 Heat of formation + Delta-G solvation = 22.242421 kcal Electronic energy + Delta-G solvation = -27296.976567 eV Core-core repulsion = 23649.198623 eV Total energy + Delta-G solvation = -3647.777944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98722 -39.82781 -37.52091 -36.55222 -34.44292 -33.96473 -32.07169 -29.00532 -27.71733 -27.62806 -27.56402 -26.01932 -25.56859 -24.08711 -21.94868 -21.41878 -20.04629 -19.11403 -18.94552 -17.85422 -16.78819 -16.68252 -16.29576 -15.74488 -15.65002 -15.13892 -14.52964 -14.48413 -13.96423 -13.83609 -13.56505 -13.25500 -13.00814 -12.77850 -12.71652 -12.62180 -12.39654 -12.09227 -12.06498 -11.93189 -11.78733 -11.75420 -11.57369 -11.42070 -11.34900 -10.86733 -10.75674 -10.57425 -10.49564 -10.24859 -10.07726 -9.67633 -9.41997 -9.19662 -8.72365 -8.63077 -8.26717 -7.68280 -6.03789 -3.95115 1.93938 2.84536 3.24594 3.35648 3.42396 3.71279 4.19073 4.45319 4.51519 4.54964 4.57545 4.69726 4.91895 4.96274 5.12507 5.20331 5.23573 5.31645 5.40285 5.43179 5.46195 5.46861 5.54255 5.65628 5.66139 5.68070 5.72835 5.78829 5.79554 5.86515 5.90296 6.08558 6.09864 6.12843 6.15138 6.21741 6.39974 6.43985 6.48806 6.60910 6.71511 6.95378 7.14703 7.48803 7.58352 7.73253 7.86770 8.32088 8.58505 8.99629 9.63387 11.09453 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.003535 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.810957 B = 7918.165302 C = 8375.747838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.490 5.490 3 C 0.080 3.920 4 C 0.022 3.978 5 C -0.466 4.466 6 H 0.073 0.927 7 C 0.092 3.908 8 N -0.893 5.893 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.305 1.305 12 H -0.268 1.268 13 C -0.211 4.211 14 C -0.192 4.192 15 C 0.049 3.951 16 C 0.136 3.864 17 N -0.632 5.632 18 C 0.681 3.319 19 O -0.570 6.570 20 O -0.363 6.363 21 C 0.135 3.865 22 C -0.184 4.184 23 C -0.140 4.140 24 C -0.183 4.183 25 C 0.062 3.938 26 H 0.020 0.980 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.263 0.737 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.096 0.904 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 -3.697 18.613 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.211 5.211 3 C -0.046 4.046 4 C 0.020 3.980 5 C -0.503 4.503 6 H 0.091 0.909 7 C -0.111 4.111 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.234 1.234 12 H -0.195 1.195 13 C -0.250 4.250 14 C -0.230 4.230 15 C -0.062 4.062 16 C 0.015 3.985 17 N -0.374 5.374 18 C 0.437 3.563 19 O -0.459 6.459 20 O -0.278 6.278 21 C 0.098 3.902 22 C -0.241 4.241 23 C -0.197 4.197 24 C -0.240 4.240 25 C -0.063 4.063 26 H 0.038 0.962 27 H 0.104 0.896 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.382 -4.605 18.296 19.917 hybrid contribution 0.279 0.485 1.632 1.725 sum -6.103 -4.121 19.928 21.245 Atomic orbital electron populations 1.22546 0.87496 1.00810 1.01500 1.61642 1.07498 1.14378 1.37607 1.22148 0.98917 0.86886 0.96661 1.19264 0.95922 0.89113 0.93658 1.20131 1.03664 1.30933 0.95549 0.90867 1.24788 0.97487 0.93357 0.95456 1.69914 1.20962 1.27519 1.34550 0.87030 0.78630 0.78537 0.83685 1.20209 1.23405 1.19498 1.23169 1.02780 0.98264 1.00793 1.22819 0.90958 1.08531 1.00677 1.23764 0.99510 0.94370 0.88532 1.23149 1.02180 0.96898 0.76265 1.48017 1.69559 1.12466 1.07329 1.17209 0.76814 0.82365 0.79890 1.90888 1.53528 1.17046 1.84472 1.86311 1.82236 1.43827 1.15407 1.22055 0.96506 0.87237 0.84396 1.22521 0.94905 1.01885 1.04790 1.21850 1.02628 1.01578 0.93615 1.22515 0.98945 0.97893 1.04666 1.24125 1.01589 0.81290 0.99286 0.96193 0.89565 0.92096 0.95930 0.91451 0.92742 0.91727 0.89629 0.90010 0.91356 0.86457 0.89625 0.88689 0.92191 0.91206 0.89298 0.91533 0.90176 0.91515 0.89336 0.91198 0.92252 0.88663 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 7.68 60.07 0.46 0.83 16 2 N -0.49 -8.94 4.41 -234.49 -1.03 -9.97 16 3 C 0.08 1.58 3.64 -3.82 -0.01 1.56 16 4 C 0.02 0.48 1.05 -155.66 -0.16 0.31 16 5 C -0.47 -12.42 9.32 -34.44 -0.32 -12.74 16 6 H 0.07 2.16 8.06 -52.49 -0.42 1.73 16 7 C 0.09 2.52 5.43 -17.82 -0.10 2.43 16 8 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 9 Si 0.89 21.08 23.97 -169.99 -4.08 17.00 16 10 H -0.27 -6.11 5.21 56.52 0.29 -5.81 16 11 H -0.31 -7.52 7.11 56.52 0.40 -7.12 16 12 H -0.27 -6.09 6.38 56.52 0.36 -5.73 16 13 C -0.21 -4.24 9.96 -26.69 -0.27 -4.50 16 14 C -0.19 -3.66 8.33 -26.69 -0.22 -3.88 16 15 C 0.05 0.79 4.03 -67.46 -0.27 0.52 16 16 C 0.14 2.12 8.15 -8.51 -0.07 2.05 16 17 N -0.63 -9.69 3.69 -190.95 -0.70 -10.39 16 18 C 0.68 10.97 8.26 54.06 0.45 11.42 16 19 O -0.57 -10.15 12.66 -19.27 -0.24 -10.40 16 20 O -0.36 -5.15 9.91 -40.32 -0.40 -5.55 16 21 C 0.13 1.52 1.13 -90.62 -0.10 1.42 16 22 C -0.18 -2.03 8.37 37.15 0.31 -1.72 16 23 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 24 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 25 C 0.06 0.84 7.76 -8.38 -0.07 0.78 16 26 H 0.02 0.26 6.73 -51.93 -0.35 -0.09 16 27 H 0.09 1.43 6.39 -51.93 -0.33 1.10 16 28 H 0.06 0.83 6.23 -51.93 -0.32 0.50 16 29 H 0.02 0.40 7.95 -51.93 -0.41 -0.02 16 30 H 0.07 1.42 2.13 -51.93 -0.11 1.31 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 34 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.07 1.14 8.02 -51.93 -0.42 0.72 16 36 H 0.12 2.04 6.13 -51.93 -0.32 1.72 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.10 1.39 6.65 -51.93 -0.35 1.04 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.22 5.88 -51.93 -0.31 0.92 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.09 1.18 5.88 -51.93 -0.31 0.88 16 46 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.10 1.17 5.53 -51.93 -0.29 0.89 16 49 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 369.24 15.07 5.56 5.56 Total: -1.00 -30.32 369.24 -8.14 -38.46 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.29 Total: 4.85 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 0.27 Total: -3.99 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.97 Total: -45.95 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.64 Total: -15.95 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.08 Total: 17.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.32 -8.14 -38.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878631108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.706 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds