Wall clock time and date at job start Tue Mar 31 2020 09:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46901 * 110.99546 * 2 1 4 4 C 1.53000 * 109.47199 * 288.75847 * 3 2 1 5 5 C 1.50694 * 115.55407 * 302.76615 * 4 3 2 6 6 H 1.07993 * 120.00143 * 143.28186 * 5 4 3 7 7 C 1.37881 * 119.99573 * 323.27949 * 5 4 3 8 8 N 1.31511 * 119.99734 * 168.96313 * 7 5 4 9 9 Si 1.86796 * 120.00285 * 348.95748 * 7 5 4 10 10 H 1.48497 * 109.47073 * 95.56392 * 9 7 5 11 11 H 1.48500 * 109.47279 * 215.57028 * 9 7 5 12 12 H 1.48508 * 109.46981 * 335.56984 * 9 7 5 13 13 C 1.53005 * 117.49450 * 157.08731 * 4 3 2 14 14 C 1.53003 * 117.49348 * 88.43542 * 4 3 2 15 15 C 1.46900 * 111.00043 * 123.95328 * 2 1 3 16 16 C 1.53500 * 114.20393 * 65.45893 * 15 2 1 17 17 N 1.47066 * 87.98317 * 220.34438 * 16 15 2 18 18 C 1.34779 * 136.05393 * 207.08385 * 17 16 15 19 19 O 1.21502 * 120.00050 * 0.02562 * 18 17 16 20 20 O 1.34637 * 119.99533 * 179.72432 * 18 17 16 21 21 C 1.45201 * 116.99567 * 180.27957 * 20 18 17 22 22 C 1.52992 * 109.47599 * 60.00355 * 21 20 18 23 23 C 1.53004 * 109.46820 * 180.02562 * 21 20 18 24 24 C 1.52998 * 109.46878 * 299.99816 * 21 20 18 25 25 C 1.47063 * 87.88439 * 27.34280 * 17 16 15 26 26 H 1.09004 * 109.47029 * 303.99634 * 1 2 3 27 27 H 1.08997 * 109.47360 * 63.99664 * 1 2 3 28 28 H 1.08998 * 109.47004 * 183.99716 * 1 2 3 29 29 H 1.08995 * 109.47469 * 48.76484 * 3 2 1 30 30 H 1.09002 * 109.46644 * 168.76423 * 3 2 1 31 31 H 0.97004 * 120.00115 * 180.02562 * 8 7 5 32 32 H 1.08995 * 117.50150 * 0.02562 * 13 4 3 33 33 H 1.09005 * 117.49312 * 145.02514 * 13 4 3 34 34 H 1.09004 * 117.49715 * 214.97649 * 14 4 3 35 35 H 1.09001 * 117.50277 * 359.97438 * 14 4 3 36 36 H 1.08997 * 113.28107 * 198.52307 * 15 2 1 37 37 H 1.09005 * 113.46437 * 105.56482 * 16 15 2 38 38 H 1.09001 * 113.46755 * 335.12322 * 16 15 2 39 39 H 1.09000 * 109.47350 * 59.99144 * 22 21 20 40 40 H 1.08992 * 109.47625 * 180.02562 * 22 21 20 41 41 H 1.09006 * 109.46652 * 300.00081 * 22 21 20 42 42 H 1.09002 * 109.47581 * 59.99751 * 23 21 20 43 43 H 1.08997 * 109.47097 * 180.02562 * 23 21 20 44 44 H 1.09005 * 109.46907 * 299.99651 * 23 21 20 45 45 H 1.08999 * 109.47137 * 60.00831 * 24 21 20 46 46 H 1.09007 * 109.47154 * 180.02562 * 24 21 20 47 47 H 1.09002 * 109.47238 * 300.00075 * 24 21 20 48 48 H 1.09000 * 113.46751 * 87.44150 * 25 17 16 49 49 H 1.09000 * 113.46845 * 217.87378 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.7451 2.0138 -1.3659 5 6 2.3271 1.2795 -2.5461 6 1 1.7879 1.2468 -3.4811 7 6 3.5483 0.6495 -2.4319 8 7 3.9574 -0.1678 -3.3776 9 14 4.6215 0.9568 -0.9343 10 1 4.3883 -0.1123 0.0696 11 1 6.0501 0.9522 -1.3397 12 1 4.2793 2.2750 -0.3421 13 6 1.7098 3.5421 -1.4319 14 6 0.4139 2.7395 -1.5718 15 6 1.9955 -0.7660 1.1376 16 6 1.6782 -2.2669 1.0865 17 7 1.4251 -2.2098 2.5341 18 6 1.4903 -3.0749 3.5655 19 8 1.8340 -4.2244 3.3735 20 8 1.1805 -2.6637 4.8096 21 6 1.2791 -3.6477 5.8727 22 6 2.7163 -4.1655 5.9569 23 6 0.8907 -3.0010 7.2038 24 6 0.3334 -4.8137 5.5776 25 6 1.0632 -0.7951 2.3598 26 1 -0.3633 0.5746 0.8520 27 1 -0.3634 0.4505 -0.9236 28 1 -0.3633 -1.0252 0.0716 29 1 1.4932 1.9534 0.7728 30 1 3.0666 1.3495 0.2002 31 1 4.8163 -0.6113 -3.2972 32 1 1.8653 4.0897 -0.5025 33 1 2.1074 4.0163 -2.3293 34 1 -0.0406 2.6861 -2.5612 35 1 -0.2836 2.7589 -0.7345 36 1 3.0362 -0.5367 1.3666 37 1 2.5368 -2.8833 0.8199 38 1 0.7905 -2.5032 0.4996 39 1 3.3900 -3.3348 6.1670 40 1 2.7901 -4.9045 6.7546 41 1 2.9925 -4.6263 5.0085 42 1 -0.1334 -2.6324 7.1436 43 1 0.9651 -3.7395 8.0020 44 1 1.5641 -2.1701 7.4142 45 1 0.6097 -5.2746 4.6293 46 1 0.4070 -5.5522 6.3759 47 1 -0.6906 -4.4448 5.5177 48 1 0.0134 -0.6433 2.1087 49 1 1.3977 -0.1574 3.1781 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878631108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:36 Heat of formation + Delta-G solvation = 1.765168 kcal Electronic energy + Delta-G solvation = -27297.864527 eV Core-core repulsion = 23649.198623 eV Total energy + Delta-G solvation = -3648.665904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.13839 -40.97841 -38.99208 -37.74394 -35.75102 -34.96780 -34.14091 -30.24945 -29.11644 -28.40337 -28.32737 -27.40367 -27.15270 -25.50654 -23.06883 -22.94696 -21.18492 -20.80694 -20.17530 -18.98741 -18.25544 -17.86256 -17.76691 -17.24894 -16.84345 -16.32152 -15.82615 -15.50928 -15.32920 -15.14216 -14.89358 -14.74605 -14.33646 -14.19125 -13.90553 -13.40036 -13.34644 -13.30204 -13.18852 -13.04764 -12.93496 -12.90488 -12.79074 -12.56562 -12.47245 -12.31051 -12.23992 -12.05029 -11.93409 -11.44635 -11.34714 -11.26894 -11.17418 -10.98465 -10.37151 -10.16343 -9.91161 -8.96417 -8.15325 -6.09177 0.84607 1.35083 1.45593 1.53045 1.65063 2.46621 2.65973 2.88594 3.13471 3.38300 3.63787 3.71325 3.76164 3.80386 3.91202 3.96189 4.08818 4.19909 4.26268 4.38097 4.39734 4.52115 4.54997 4.56000 4.58127 4.60334 4.63956 4.69935 4.72633 4.78469 4.83388 4.84570 4.90488 4.99194 5.02160 5.09310 5.15363 5.24588 5.28500 5.29829 5.36488 5.41456 5.60271 5.83700 6.25127 6.25284 6.47702 6.56596 6.88436 7.14859 7.52771 9.01931 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.003535 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.810957 B = 7918.165302 C = 8375.747838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.520 5.520 3 C 0.086 3.914 4 C -0.008 4.008 5 C -0.464 4.464 6 H 0.024 0.976 7 C 0.039 3.961 8 N -0.948 5.948 9 Si 0.945 3.055 10 H -0.256 1.256 11 H -0.323 1.323 12 H -0.245 1.245 13 C -0.205 4.205 14 C -0.169 4.169 15 C 0.048 3.952 16 C 0.134 3.866 17 N -0.635 5.635 18 C 0.676 3.324 19 O -0.595 6.595 20 O -0.365 6.365 21 C 0.121 3.879 22 C -0.181 4.181 23 C -0.133 4.133 24 C -0.179 4.179 25 C 0.079 3.921 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.260 0.740 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.063 0.937 48 H 0.115 0.885 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 -2.409 22.702 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.242 5.242 3 C -0.040 4.040 4 C -0.009 4.009 5 C -0.501 4.501 6 H 0.042 0.958 7 C -0.158 4.158 8 N -0.589 5.589 9 Si 0.776 3.224 10 H -0.182 1.182 11 H -0.254 1.254 12 H -0.170 1.170 13 C -0.243 4.243 14 C -0.206 4.206 15 C -0.063 4.063 16 C 0.012 3.988 17 N -0.378 5.378 18 C 0.433 3.567 19 O -0.486 6.486 20 O -0.279 6.279 21 C 0.085 3.915 22 C -0.238 4.238 23 C -0.190 4.190 24 C -0.236 4.236 25 C -0.045 4.045 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.124 0.876 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.082 0.918 48 H 0.133 0.867 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.002 -3.283 22.418 24.028 hybrid contribution 0.681 0.064 0.274 0.737 sum -7.321 -3.219 22.692 24.060 Atomic orbital electron populations 1.22554 0.85757 1.02069 1.01792 1.61511 1.09345 1.14009 1.39292 1.21978 0.98457 0.87946 0.95636 1.19216 0.98424 0.89978 0.93298 1.20310 1.03201 1.30879 0.95725 0.95793 1.25518 0.98845 0.93166 0.98301 1.70078 1.21525 1.29908 1.37358 0.86123 0.75401 0.80152 0.80723 1.18183 1.25363 1.16977 1.23171 1.02943 0.96542 1.01636 1.22829 0.90534 1.05789 1.01440 1.23603 0.99404 0.93966 0.89281 1.23149 1.02000 0.96689 0.76977 1.48042 1.69464 1.13295 1.06964 1.17368 0.76623 0.82126 0.80563 1.90884 1.54539 1.18234 1.84988 1.86323 1.81854 1.44817 1.14940 1.22505 0.96673 0.87447 0.84852 1.22484 0.94968 1.02369 1.03973 1.21877 1.02806 1.02210 0.92107 1.22470 0.98937 0.98240 1.03965 1.24092 1.01899 0.80267 0.98259 0.93144 0.91394 0.90883 0.92575 0.92976 0.93156 0.88711 0.91117 0.91297 0.87769 0.87778 0.91301 0.87837 0.92118 0.88614 0.92474 0.91072 0.87594 0.91321 0.92430 0.88666 0.91823 0.86732 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 7.68 127.69 0.98 1.67 16 2 N -0.52 -17.81 4.41 -895.78 -3.95 -21.77 16 3 C 0.09 3.12 3.64 86.30 0.31 3.43 16 4 C -0.01 -0.33 1.05 -52.93 -0.06 -0.39 16 5 C -0.46 -25.37 9.32 25.60 0.24 -25.13 16 6 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 7 C 0.04 2.21 5.43 84.66 0.46 2.67 16 8 N -0.95 -58.80 13.96 21.45 0.30 -58.51 16 9 Si 0.95 43.90 23.97 68.60 1.64 45.54 16 10 H -0.26 -10.95 5.21 99.48 0.52 -10.43 16 11 H -0.32 -15.81 7.11 99.48 0.71 -15.11 16 12 H -0.24 -10.30 6.38 99.48 0.64 -9.66 16 13 C -0.20 -7.61 9.96 30.62 0.30 -7.31 16 14 C -0.17 -5.95 8.33 30.62 0.26 -5.70 16 15 C 0.05 1.45 4.03 45.47 0.18 1.64 16 16 C 0.13 4.06 8.15 83.18 0.68 4.74 16 17 N -0.64 -18.48 3.69 -988.45 -3.64 -22.13 16 18 C 0.68 21.18 8.26 129.79 1.07 22.25 16 19 O -0.59 -21.41 12.66 19.83 0.25 -21.16 16 20 O -0.36 -9.67 9.91 -55.46 -0.55 -10.22 16 21 C 0.12 2.47 1.13 -10.80 -0.01 2.46 16 22 C -0.18 -3.73 8.37 71.98 0.60 -3.12 16 23 C -0.13 -1.72 8.85 71.98 0.64 -1.08 16 24 C -0.18 -3.53 8.37 71.98 0.60 -2.93 16 25 C 0.08 1.87 7.76 83.26 0.65 2.52 16 26 H 0.05 1.07 6.73 -2.38 -0.02 1.06 16 27 H 0.07 2.11 6.39 -2.39 -0.02 2.09 16 28 H 0.07 1.79 6.23 -2.39 -0.01 1.77 16 29 H 0.06 1.65 7.95 -2.39 -0.02 1.63 16 30 H 0.05 2.04 2.13 -2.39 -0.01 2.03 16 31 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 32 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 34 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.10 2.95 8.02 -2.39 -0.02 2.93 16 36 H 0.10 3.42 6.13 -2.39 -0.01 3.41 16 37 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.10 2.93 6.65 -2.39 -0.02 2.91 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.57 5.88 -2.38 -0.01 1.55 16 42 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.06 1.52 5.88 -2.39 -0.01 1.51 16 46 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 47 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.11 2.30 5.53 -2.39 -0.01 2.29 16 49 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -70.04 369.24 1.63 -68.42 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.67 Total: 24.12 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 6.91 Total: -4.29 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -7.30 Total: -102.40 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.30 Total: -31.39 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.64 Total: 45.54 kcal Total: -70.04 1.63 -68.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878631108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.183 kcal (2) G-P(sol) polarization free energy of solvation -70.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds