Wall clock time and date at job start Tue Mar 31 2020 10:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47037 * 2 1 4 4 C 1.50689 * 109.47325 * 119.99817 * 2 1 3 5 5 O 1.21284 * 120.00889 * 264.99984 * 4 2 1 6 6 N 1.34781 * 119.99869 * 85.00014 * 4 2 1 7 7 C 1.47019 * 125.64625 * 359.97438 * 6 4 2 8 8 C 1.54327 * 107.27283 * 178.98336 * 7 6 4 9 9 C 1.55164 * 102.94189 * 337.80826 * 8 7 6 10 10 O 1.42893 * 111.00316 * 277.38658 * 9 8 7 11 11 C 1.50697 * 111.00558 * 153.56983 * 9 8 7 12 12 H 1.07991 * 120.00449 * 241.17846 * 11 9 8 13 13 C 1.37885 * 119.99686 * 61.45677 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 9 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99667 * 15 13 11 19 19 C 1.47432 * 125.64839 * 180.02562 * 6 4 2 20 20 N 1.46903 * 109.47084 * 240.00275 * 2 1 3 21 21 C 1.46847 * 110.99728 * 184.20880 * 20 2 1 22 22 C 1.53042 * 109.52314 * 174.15987 * 21 20 2 23 23 C 1.53120 * 109.27707 * 59.17653 * 22 21 20 24 24 C 1.53120 * 109.16261 * 302.34990 * 23 22 21 25 25 C 1.46844 * 110.99941 * 59.99980 * 20 2 1 26 26 H 1.09002 * 109.47285 * 300.00179 * 1 2 3 27 27 H 1.09005 * 109.47398 * 59.99555 * 1 2 3 28 28 H 1.08999 * 109.46879 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47126 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47338 * 299.99761 * 3 2 1 31 31 H 1.09001 * 109.47501 * 60.00263 * 3 2 1 32 32 H 1.09000 * 109.88209 * 59.57137 * 7 6 4 33 33 H 1.08995 * 109.88438 * 298.40411 * 7 6 4 34 34 H 1.08998 * 110.72390 * 219.44583 * 8 7 6 35 35 H 1.09000 * 110.72206 * 96.16560 * 8 7 6 36 36 H 0.96696 * 114.00203 * 295.41997 * 10 9 8 37 37 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 38 38 H 1.09001 * 110.36478 * 85.24856 * 19 6 4 39 39 H 1.08993 * 110.36888 * 322.92492 * 19 6 4 40 40 H 1.09006 * 109.46586 * 294.17237 * 21 20 2 41 41 H 1.08999 * 109.46735 * 54.14385 * 21 20 2 42 42 H 1.08997 * 109.50126 * 299.23899 * 22 21 20 43 43 H 1.08994 * 109.54084 * 179.13697 * 22 21 20 44 44 H 1.09004 * 109.52413 * 182.43919 * 23 22 21 45 45 H 1.09004 * 109.52479 * 62.25433 * 23 22 21 46 46 H 1.08998 * 109.50070 * 297.71001 * 24 23 22 47 47 H 1.09002 * 109.50638 * 177.59491 * 24 23 22 48 48 H 1.08999 * 109.46277 * 305.85154 * 25 20 2 49 49 H 1.08994 * 109.46535 * 65.82484 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.3208 -0.0749 2.2223 6 7 2.1610 -2.0520 1.2286 7 6 1.8484 -2.9412 0.1003 8 6 2.1734 -4.3817 0.5485 9 6 3.1837 -4.1659 1.7063 10 8 4.5059 -3.9683 1.2020 11 6 3.1457 -5.3171 2.6780 12 1 2.8719 -5.1452 3.7084 13 6 3.4661 -6.5890 2.2528 14 7 3.7995 -6.7984 0.9980 15 14 3.4264 -8.0147 3.4592 16 1 3.0237 -7.5181 4.7994 17 1 2.4489 -9.0306 2.9929 18 1 4.7759 -8.6287 3.5442 19 6 2.6377 -2.8709 2.3581 20 7 2.0196 -0.6924 -1.1995 21 6 3.4841 -0.7998 -1.1841 22 6 3.9471 -1.6499 -2.3695 23 6 3.4780 -0.9979 -3.6731 24 6 1.9539 -0.8536 -3.6429 25 6 1.5488 -0.0265 -2.4206 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 2.4593 -2.6746 -0.7621 33 1 0.7912 -2.8613 -0.1527 34 1 2.6328 -4.9442 -0.2643 35 1 1.2762 -4.8853 0.9086 36 1 4.8703 -4.7367 0.7418 37 1 4.0245 -7.6932 0.6988 38 1 1.8134 -3.1039 3.0322 39 1 3.4322 -2.3520 2.8942 40 1 3.9220 0.1957 -1.2582 41 1 3.8042 -1.2689 -0.2538 42 1 3.5206 -2.6498 -2.2887 43 1 5.0349 -1.7171 -2.3671 44 1 3.7681 -1.6226 -4.5179 45 1 3.9351 -0.0134 -3.7730 46 1 1.4961 -1.8409 -3.5822 47 1 1.6178 -0.3511 -4.5499 48 1 0.4632 0.0659 -2.3883 49 1 1.9957 0.9652 -2.4889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911526378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:40 Heat of formation + Delta-G solvation = -71.466581 kcal Electronic energy + Delta-G solvation = -29035.931240 eV Core-core repulsion = 25384.089769 eV Total energy + Delta-G solvation = -3651.841471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65666 -38.31954 -37.24116 -34.82618 -34.19384 -32.17787 -31.03982 -30.25979 -29.63406 -28.18432 -27.23999 -25.52049 -24.29448 -23.12537 -22.44095 -21.07003 -19.60518 -19.32382 -18.33711 -17.21685 -16.97527 -15.51469 -15.27124 -15.07665 -14.91158 -14.63781 -14.32908 -14.19275 -14.06688 -13.54082 -13.38650 -13.27990 -12.90592 -12.57422 -12.46949 -12.16404 -12.02388 -11.87708 -11.76509 -11.63942 -11.49976 -11.30523 -11.27773 -11.13143 -10.91554 -10.75405 -10.65527 -10.45414 -10.42448 -10.31381 -10.22212 -9.87885 -9.34536 -9.16589 -8.66101 -8.24864 -8.07589 -7.74478 -6.25141 -4.32878 3.07512 3.20183 3.29314 3.33940 3.65719 3.86242 4.29375 4.70224 4.81147 4.92096 4.96922 5.01909 5.11861 5.16775 5.31614 5.38400 5.47119 5.59549 5.60510 5.67173 5.71843 5.76994 5.79823 5.81727 5.90892 5.92615 6.00734 6.04765 6.09037 6.16189 6.19200 6.24936 6.30367 6.34443 6.45639 6.51605 6.65001 6.86646 7.00186 7.07798 7.13787 7.17333 7.42518 7.45611 7.77403 8.06759 8.28940 8.69063 8.74989 9.34803 9.43673 10.81738 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.004830 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.549021 B = 5795.732467 C = 6609.278810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.094 3.906 3 C -0.164 4.164 4 C 0.534 3.466 5 O -0.561 6.561 6 N -0.592 5.592 7 C 0.100 3.900 8 C -0.139 4.139 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.534 4.534 12 H 0.063 0.937 13 C 0.073 3.927 14 N -0.894 5.894 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.117 3.883 20 N -0.516 5.516 21 C 0.043 3.957 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.115 4.115 25 C 0.049 3.951 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.060 0.940 36 H 0.380 0.620 37 H 0.266 0.734 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.032 0.968 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.798 10.621 -10.583 15.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.002 3.998 3 C -0.223 4.223 4 C 0.321 3.679 5 O -0.441 6.441 6 N -0.323 5.323 7 C -0.022 4.022 8 C -0.178 4.178 9 C 0.209 3.791 10 O -0.391 6.391 11 C -0.573 4.573 12 H 0.081 0.919 13 C -0.129 4.129 14 N -0.533 5.533 15 Si 0.728 3.272 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.004 4.004 20 N -0.242 5.242 21 C -0.085 4.085 22 C -0.152 4.152 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.078 4.078 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.229 0.771 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.096 0.904 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.884 10.992 -9.904 15.581 hybrid contribution 0.328 -0.674 0.321 0.815 sum -4.556 10.318 -9.583 14.801 Atomic orbital electron populations 1.21829 0.91942 1.03284 1.02276 1.21193 0.96847 0.92590 0.89195 1.22231 1.01879 0.95645 1.02536 1.19801 0.78228 0.81321 0.88591 1.90655 1.52151 1.65784 1.35466 1.48550 1.62478 1.04930 1.16297 1.22556 0.99559 0.90302 0.89774 1.23203 1.00662 0.92719 1.01206 1.19573 0.80363 0.89398 0.89774 1.86115 1.31997 1.43519 1.77475 1.21506 1.47197 0.92005 0.96559 0.91871 1.24971 0.93798 0.98828 0.95347 1.69737 1.46173 1.22582 1.14826 0.86405 0.77748 0.81768 0.81302 1.19647 1.20877 1.20839 1.22371 0.97866 0.91625 0.88582 1.62458 1.10923 1.50081 1.00731 1.22296 0.86637 0.98719 1.00809 1.21607 1.00496 1.00016 0.93125 1.21587 0.95800 1.00417 0.97981 1.21576 0.96171 1.01100 0.96452 1.22199 1.00385 0.95526 0.89736 0.91702 0.91527 0.91155 0.92216 0.92038 0.90973 0.88950 0.93446 0.89887 0.92117 0.77055 0.92389 0.91338 0.91517 0.94978 0.89094 0.90341 0.91477 0.91957 0.92706 0.90865 0.91935 0.90440 0.94745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.23 37.15 0.31 -1.37 16 2 C 0.09 1.37 0.42 -132.76 -0.06 1.32 16 3 C -0.16 -2.19 7.32 37.16 0.27 -1.92 16 4 C 0.53 10.22 5.41 -10.99 -0.06 10.16 16 5 O -0.56 -12.53 16.35 5.55 0.09 -12.44 16 6 N -0.59 -11.80 2.64 -170.52 -0.45 -12.25 16 7 C 0.10 1.85 5.33 -3.06 -0.02 1.84 16 8 C -0.14 -3.00 5.38 -24.89 -0.13 -3.14 16 9 C 0.25 5.96 0.88 -89.62 -0.08 5.88 16 10 O -0.58 -14.47 13.18 -35.23 -0.46 -14.94 16 11 C -0.53 -13.90 8.27 -34.44 -0.28 -14.18 16 12 H 0.06 1.66 7.79 -52.49 -0.41 1.25 16 13 C 0.07 1.87 5.27 -17.82 -0.09 1.77 16 14 N -0.89 -22.78 10.73 55.43 0.59 -22.18 16 15 Si 0.90 20.19 29.54 -169.99 -5.02 15.17 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 C 0.12 2.66 6.08 -2.52 -0.02 2.64 16 20 N -0.52 -6.88 2.15 -220.36 -0.47 -7.35 16 21 C 0.04 0.62 3.56 -3.83 -0.01 0.61 16 22 C -0.11 -1.48 5.87 -26.65 -0.16 -1.63 16 23 C -0.12 -1.25 6.00 -26.61 -0.16 -1.41 16 24 C -0.12 -1.13 6.09 -26.65 -0.16 -1.29 16 25 C 0.05 0.52 4.64 -3.83 -0.02 0.50 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.66 6.28 -51.93 -0.33 0.33 16 28 H 0.07 0.92 7.28 -51.93 -0.38 0.54 16 29 H 0.06 0.86 6.63 -51.93 -0.34 0.51 16 30 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 31 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 32 H 0.09 1.63 3.12 -51.93 -0.16 1.46 16 33 H 0.05 0.82 7.28 -51.93 -0.38 0.44 16 34 H 0.08 1.88 7.54 -51.93 -0.39 1.49 16 35 H 0.06 1.35 8.03 -51.93 -0.42 0.94 16 36 H 0.38 9.48 7.51 45.56 0.34 9.82 16 37 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 38 H 0.07 1.53 8.03 -51.93 -0.42 1.11 16 39 H 0.07 1.61 8.04 -51.93 -0.42 1.19 16 40 H 0.03 0.45 6.71 -51.93 -0.35 0.10 16 41 H 0.09 1.66 5.73 -51.93 -0.30 1.37 16 42 H 0.08 1.12 6.77 -51.93 -0.35 0.77 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.08 0.75 6.01 -51.93 -0.31 0.44 16 49 H 0.03 0.36 6.63 -51.93 -0.34 0.01 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -27.59 355.63 -8.41 -36.00 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: -7.37 Total: 12.86 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -0.67 Total: -0.22 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -0.33 Total: -41.79 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.37 Total: -27.38 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.59 -8.41 -36.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.470 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds