Wall clock time and date at job start Tue Mar 31 2020 10:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47037 * 2 1 4 4 C 1.50689 * 109.47325 * 119.99817 * 2 1 3 5 5 O 1.21284 * 120.00889 * 264.99984 * 4 2 1 6 6 N 1.34781 * 119.99869 * 85.00014 * 4 2 1 7 7 C 1.47019 * 125.64625 * 359.97438 * 6 4 2 8 8 C 1.54327 * 107.27283 * 178.98336 * 7 6 4 9 9 C 1.55164 * 102.94189 * 337.80826 * 8 7 6 10 10 O 1.42893 * 111.00316 * 277.38658 * 9 8 7 11 11 C 1.50697 * 111.00558 * 153.56983 * 9 8 7 12 12 H 1.07991 * 120.00449 * 241.17846 * 11 9 8 13 13 C 1.37885 * 119.99686 * 61.45677 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 9 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99667 * 15 13 11 19 19 C 1.47432 * 125.64839 * 180.02562 * 6 4 2 20 20 N 1.46903 * 109.47084 * 240.00275 * 2 1 3 21 21 C 1.46847 * 110.99728 * 184.20880 * 20 2 1 22 22 C 1.53042 * 109.52314 * 174.15987 * 21 20 2 23 23 C 1.53120 * 109.27707 * 59.17653 * 22 21 20 24 24 C 1.53120 * 109.16261 * 302.34990 * 23 22 21 25 25 C 1.46844 * 110.99941 * 59.99980 * 20 2 1 26 26 H 1.09002 * 109.47285 * 300.00179 * 1 2 3 27 27 H 1.09005 * 109.47398 * 59.99555 * 1 2 3 28 28 H 1.08999 * 109.46879 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47126 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47338 * 299.99761 * 3 2 1 31 31 H 1.09001 * 109.47501 * 60.00263 * 3 2 1 32 32 H 1.09000 * 109.88209 * 59.57137 * 7 6 4 33 33 H 1.08995 * 109.88438 * 298.40411 * 7 6 4 34 34 H 1.08998 * 110.72390 * 219.44583 * 8 7 6 35 35 H 1.09000 * 110.72206 * 96.16560 * 8 7 6 36 36 H 0.96696 * 114.00203 * 295.41997 * 10 9 8 37 37 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 38 38 H 1.09001 * 110.36478 * 85.24856 * 19 6 4 39 39 H 1.08993 * 110.36888 * 322.92492 * 19 6 4 40 40 H 1.09006 * 109.46586 * 294.17237 * 21 20 2 41 41 H 1.08999 * 109.46735 * 54.14385 * 21 20 2 42 42 H 1.08997 * 109.50126 * 299.23899 * 22 21 20 43 43 H 1.08994 * 109.54084 * 179.13697 * 22 21 20 44 44 H 1.09004 * 109.52413 * 182.43919 * 23 22 21 45 45 H 1.09004 * 109.52479 * 62.25433 * 23 22 21 46 46 H 1.08998 * 109.50070 * 297.71001 * 24 23 22 47 47 H 1.09002 * 109.50638 * 177.59491 * 24 23 22 48 48 H 1.08999 * 109.46277 * 305.85154 * 25 20 2 49 49 H 1.08994 * 109.46535 * 65.82484 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.3208 -0.0749 2.2223 6 7 2.1610 -2.0520 1.2286 7 6 1.8484 -2.9412 0.1003 8 6 2.1734 -4.3817 0.5485 9 6 3.1837 -4.1659 1.7063 10 8 4.5059 -3.9683 1.2020 11 6 3.1457 -5.3171 2.6780 12 1 2.8719 -5.1452 3.7084 13 6 3.4661 -6.5890 2.2528 14 7 3.7995 -6.7984 0.9980 15 14 3.4264 -8.0147 3.4592 16 1 3.0237 -7.5181 4.7994 17 1 2.4489 -9.0306 2.9929 18 1 4.7759 -8.6287 3.5442 19 6 2.6377 -2.8709 2.3581 20 7 2.0196 -0.6924 -1.1995 21 6 3.4841 -0.7998 -1.1841 22 6 3.9471 -1.6499 -2.3695 23 6 3.4780 -0.9979 -3.6731 24 6 1.9539 -0.8536 -3.6429 25 6 1.5488 -0.0265 -2.4206 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 2.4593 -2.6746 -0.7621 33 1 0.7912 -2.8613 -0.1527 34 1 2.6328 -4.9442 -0.2643 35 1 1.2762 -4.8853 0.9086 36 1 4.8703 -4.7367 0.7418 37 1 4.0245 -7.6932 0.6988 38 1 1.8134 -3.1039 3.0322 39 1 3.4322 -2.3520 2.8942 40 1 3.9220 0.1957 -1.2582 41 1 3.8042 -1.2689 -0.2538 42 1 3.5206 -2.6498 -2.2887 43 1 5.0349 -1.7171 -2.3671 44 1 3.7681 -1.6226 -4.5179 45 1 3.9351 -0.0134 -3.7730 46 1 1.4961 -1.8409 -3.5822 47 1 1.6178 -0.3511 -4.5499 48 1 0.4632 0.0659 -2.3883 49 1 1.9957 0.9652 -2.4889 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911526378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:39 Heat of formation + Delta-G solvation = -88.871266 kcal Electronic energy + Delta-G solvation = -29036.685964 eV Core-core repulsion = 25384.089769 eV Total energy + Delta-G solvation = -3652.596195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.97838 -39.71427 -38.90049 -36.02289 -35.91981 -34.18739 -32.03931 -31.43457 -31.20096 -29.91523 -28.32415 -27.26102 -25.49833 -24.34318 -23.74624 -22.39172 -21.42520 -20.35158 -19.77831 -19.04692 -18.40992 -16.98793 -16.93321 -16.65847 -16.45082 -15.90744 -15.61597 -15.49751 -15.18528 -15.00277 -14.73905 -14.46889 -14.19303 -13.95075 -13.84552 -13.68751 -13.38440 -13.23661 -13.16339 -12.95812 -12.89916 -12.85726 -12.64819 -12.49596 -12.43697 -12.30645 -12.23045 -11.89082 -11.72963 -11.50554 -11.31359 -11.22719 -11.11557 -10.73994 -10.58484 -10.09897 -9.49167 -9.15045 -8.22086 -6.37125 1.40463 1.44777 1.54481 1.58354 2.12057 2.41339 2.78584 3.02519 3.44378 3.80167 3.87344 3.94294 3.97368 4.06032 4.15026 4.18484 4.37649 4.40221 4.41957 4.50817 4.56036 4.61444 4.64552 4.70261 4.71691 4.78634 4.81304 4.84704 4.89147 5.01104 5.07683 5.11823 5.15555 5.16759 5.24648 5.28692 5.36393 5.37915 5.41534 5.54429 5.57172 5.64749 5.81088 5.97143 6.10975 6.16199 6.65297 6.72805 7.17797 7.33537 7.42552 8.83420 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.004830 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.549021 B = 5795.732467 C = 6609.278810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.100 3.900 3 C -0.158 4.158 4 C 0.526 3.474 5 O -0.600 6.600 6 N -0.593 5.593 7 C 0.114 3.886 8 C -0.127 4.127 9 C 0.240 3.760 10 O -0.590 6.590 11 C -0.563 4.563 12 H 0.050 0.950 13 C 0.039 3.961 14 N -0.903 5.903 15 Si 0.958 3.042 16 H -0.276 1.276 17 H -0.275 1.275 18 H -0.280 1.280 19 C 0.122 3.878 20 N -0.520 5.520 21 C 0.049 3.951 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.112 4.112 25 C 0.047 3.953 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.051 0.949 36 H 0.377 0.623 37 H 0.271 0.729 38 H 0.066 0.934 39 H 0.040 0.960 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 11.383 -12.986 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 C -0.217 4.217 4 C 0.316 3.684 5 O -0.482 6.482 6 N -0.323 5.323 7 C -0.007 4.007 8 C -0.166 4.166 9 C 0.200 3.800 10 O -0.398 6.398 11 C -0.601 4.601 12 H 0.068 0.932 13 C -0.163 4.163 14 N -0.542 5.542 15 Si 0.784 3.216 16 H -0.201 1.201 17 H -0.200 1.200 18 H -0.205 1.205 19 C -0.001 4.001 20 N -0.246 5.246 21 C -0.079 4.079 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.080 4.080 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.114 0.886 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.226 0.774 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.115 0.885 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.389 11.759 -12.339 18.203 hybrid contribution 0.855 -0.904 1.094 1.657 sum -5.533 10.855 -11.245 16.580 Atomic orbital electron populations 1.21850 0.89698 1.03442 1.03915 1.21183 0.98300 0.92396 0.87337 1.22205 1.00838 0.94908 1.03733 1.20816 0.77060 0.80695 0.89850 1.90625 1.53716 1.66358 1.37500 1.48593 1.62584 1.05522 1.15637 1.22506 1.00959 0.87946 0.89324 1.22990 0.99299 0.94575 0.99757 1.19675 0.80377 0.89425 0.90506 1.86113 1.32845 1.43336 1.77506 1.21696 1.48554 0.93368 0.96510 0.93158 1.25565 0.93279 1.00553 0.96855 1.69794 1.45624 1.23219 1.15577 0.85518 0.77810 0.79106 0.79206 1.20104 1.19996 1.20533 1.22132 0.97029 0.91524 0.89457 1.62427 1.09918 1.50783 1.01500 1.22132 0.87740 0.98694 0.99328 1.21565 1.00197 0.99058 0.94161 1.21558 0.96560 1.00704 0.96401 1.21582 0.95309 1.00936 0.97093 1.22372 1.01515 0.95832 0.88267 0.91969 0.88021 0.91734 0.93864 0.88605 0.91916 0.87770 0.91306 0.91000 0.93032 0.77432 0.91993 0.91567 0.94105 0.94610 0.93538 0.92034 0.91939 0.90910 0.91841 0.91584 0.89294 0.88518 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.23 71.98 0.59 -2.27 16 2 C 0.10 2.76 0.42 2.78 0.00 2.76 16 3 C -0.16 -3.91 7.32 71.98 0.53 -3.39 16 4 C 0.53 20.41 5.41 87.65 0.47 20.89 16 5 O -0.60 -27.69 16.35 -3.04 -0.05 -27.74 16 6 N -0.59 -24.18 2.64 -811.78 -2.14 -26.33 16 7 C 0.11 4.20 5.33 86.73 0.46 4.66 16 8 C -0.13 -5.60 5.38 31.79 0.17 -5.43 16 9 C 0.24 11.91 0.88 -10.14 -0.01 11.90 16 10 O -0.59 -30.52 13.18 -148.98 -1.96 -32.49 16 11 C -0.56 -30.17 8.27 25.60 0.21 -29.96 16 12 H 0.05 2.75 7.79 -2.92 -0.02 2.73 16 13 C 0.04 2.02 5.27 84.66 0.45 2.46 16 14 N -0.90 -46.29 10.73 21.45 0.23 -46.06 16 15 Si 0.96 41.61 29.54 68.60 2.03 43.63 16 16 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 19 C 0.12 5.78 6.08 86.86 0.53 6.31 16 20 N -0.52 -12.78 2.15 -851.08 -1.83 -14.61 16 21 C 0.05 1.40 3.56 86.33 0.31 1.70 16 22 C -0.11 -2.78 5.87 30.65 0.18 -2.60 16 23 C -0.11 -2.05 6.00 30.67 0.18 -1.86 16 24 C -0.11 -1.74 6.09 30.65 0.19 -1.55 16 25 C 0.05 0.80 4.64 86.33 0.40 1.20 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.51 6.28 -2.38 -0.01 1.50 16 28 H 0.06 1.50 7.28 -2.39 -0.02 1.48 16 29 H 0.04 1.20 6.63 -2.38 -0.02 1.19 16 30 H 0.10 1.71 6.54 -2.39 -0.02 1.69 16 31 H 0.06 1.68 7.87 -2.39 -0.02 1.66 16 32 H 0.10 3.64 3.12 -2.39 -0.01 3.63 16 33 H 0.07 2.26 7.28 -2.39 -0.02 2.24 16 34 H 0.07 3.30 7.54 -2.39 -0.02 3.28 16 35 H 0.05 2.32 8.03 -2.39 -0.02 2.30 16 36 H 0.38 19.50 7.51 -74.06 -0.56 18.94 16 37 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 38 H 0.07 3.11 8.03 -2.39 -0.02 3.09 16 39 H 0.04 2.10 8.04 -2.39 -0.02 2.08 16 40 H 0.04 0.98 6.71 -2.38 -0.02 0.96 16 41 H 0.05 1.75 5.73 -2.39 -0.01 1.74 16 42 H 0.06 1.73 6.77 -2.39 -0.02 1.71 16 43 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.10 1.33 6.01 -2.39 -0.01 1.32 16 49 H 0.04 0.71 6.63 -2.39 -0.02 0.70 16 Total: -1.00 -61.73 355.63 1.33 -60.40 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: 0.40 Total: 38.37 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 4.67 Total: 4.81 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -3.75 Total: -87.00 kcal Atomic # 8 Polarization: -58.21 SS G_CDS: -2.01 Total: -60.23 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.63 kcal Total: -61.73 1.33 -60.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911526378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.468 kcal (2) G-P(sol) polarization free energy of solvation -61.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds