Wall clock time and date at job start Tue Mar 31 2020 10:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47576 * 2 1 4 4 H 1.08999 * 109.48308 * 54.99582 * 3 2 1 5 5 O 1.42907 * 109.47695 * 294.97899 * 3 2 1 6 6 C 1.42903 * 114.09758 * 178.85703 * 5 3 2 7 7 C 1.53098 * 109.41541 * 61.15557 * 6 5 3 8 8 C 1.53179 * 109.16194 * 302.39082 * 7 6 5 9 9 C 1.53095 * 109.48633 * 175.02360 * 3 2 1 10 10 H 1.08999 * 109.51815 * 297.49906 * 9 3 2 11 11 C 1.50700 * 109.52081 * 57.68024 * 9 3 2 12 12 O 1.21280 * 119.99804 * 11.73912 * 11 9 3 13 13 N 1.34774 * 120.00175 * 191.73023 * 11 9 3 14 14 C 1.46500 * 120.00300 * 182.51219 * 13 11 9 15 15 C 1.52999 * 109.46775 * 83.92235 * 14 13 11 16 16 C 1.46503 * 119.99585 * 2.51216 * 13 11 9 17 17 C 1.53944 * 113.74338 * 210.31301 * 16 13 11 18 18 N 1.47581 * 86.11935 * 222.05013 * 17 16 13 19 19 C 1.36934 * 134.49627 * 204.63919 * 18 17 16 20 20 H 1.07997 * 120.00133 * 179.97438 * 19 18 17 21 21 C 1.38814 * 119.99533 * 359.97438 * 19 18 17 22 22 N 1.31615 * 120.00606 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99799 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47034 * 90.00406 * 23 21 19 25 25 H 1.48497 * 109.47355 * 209.99936 * 23 21 19 26 26 H 1.48499 * 109.47197 * 330.00349 * 23 21 19 27 27 C 1.47585 * 91.01300 * 24.64074 * 18 17 16 28 28 H 1.09000 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47258 * 300.00328 * 1 2 3 30 30 H 1.09001 * 109.47210 * 60.00358 * 1 2 3 31 31 H 1.09002 * 109.47258 * 239.99672 * 2 1 3 32 32 H 1.09004 * 109.46996 * 120.00113 * 2 1 3 33 33 H 1.09001 * 109.48539 * 181.13458 * 6 5 3 34 34 H 1.09003 * 109.48347 * 301.17681 * 6 5 3 35 35 H 1.08997 * 109.52263 * 62.29505 * 7 6 5 36 36 H 1.09003 * 109.52458 * 182.42208 * 7 6 5 37 37 H 1.09002 * 109.54307 * 176.84733 * 8 7 6 38 38 H 1.08991 * 109.54336 * 297.02432 * 8 7 6 39 39 H 1.08998 * 109.46890 * 203.92353 * 14 13 11 40 40 H 1.08992 * 109.46845 * 323.92135 * 14 13 11 41 41 H 1.09005 * 109.47351 * 60.00273 * 15 14 13 42 42 H 1.09007 * 109.46633 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.47508 * 299.99740 * 15 14 13 44 44 H 1.08998 * 112.94713 * 342.04747 * 16 13 11 45 45 H 1.09004 * 113.76449 * 336.35032 * 17 16 13 46 46 H 1.08993 * 113.77467 * 107.74821 * 17 16 13 47 47 H 0.96991 * 120.00555 * 180.02562 * 22 21 19 48 48 H 1.09005 * 113.76531 * 221.06165 * 27 18 17 49 49 H 1.09000 * 113.87504 * 89.67798 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9817 0.8417 5 8 1.6625 2.0813 -1.2213 6 6 2.0692 3.4481 -1.3147 7 6 3.5963 3.5307 -1.2426 8 6 4.0734 2.8884 0.0636 9 6 3.5659 1.4445 0.1252 10 1 3.8538 0.9972 1.0766 11 6 4.1652 0.6514 -1.0075 12 8 3.4734 0.3161 -1.9455 13 7 5.4699 0.3148 -0.9781 14 6 6.0654 -0.4083 -2.1044 15 6 6.4736 0.5879 -3.1915 16 6 6.2926 0.6722 0.1802 17 6 7.7726 0.9199 -0.1634 18 7 8.0807 0.1638 1.0660 19 6 9.1411 0.1303 1.9317 20 1 9.1212 -0.5319 2.7846 21 6 10.2416 0.9476 1.7130 22 7 10.2657 1.7550 0.6739 23 14 11.6879 0.9025 2.8944 24 1 12.6670 -0.1173 2.4395 25 1 12.3414 2.2355 2.9281 26 1 11.2053 0.5532 4.2546 27 6 6.7868 -0.5418 0.9876 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.7271 3.8653 -2.2618 34 1 1.6353 4.0137 -0.4901 35 1 4.0302 2.9993 -2.0895 36 1 3.9063 4.5753 -1.2704 37 1 5.1630 2.8936 0.0958 38 1 3.6810 3.4505 0.9109 39 1 6.9451 -0.9532 -1.7620 40 1 5.3379 -1.1111 -2.5103 41 1 7.2012 1.2909 -2.7855 42 1 6.9171 0.0499 -4.0294 43 1 5.5939 1.1328 -3.5339 44 1 5.8459 1.4547 0.7936 45 1 8.1001 0.4246 -1.0775 46 1 8.0645 1.9691 -0.1186 47 1 11.0349 2.3257 0.5208 48 1 6.2916 -0.6596 1.9514 49 1 6.8230 -1.4669 0.4122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950489841.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:38 Heat of formation + Delta-G solvation = -30.225637 kcal Electronic energy + Delta-G solvation = -28282.024285 eV Core-core repulsion = 24631.971156 eV Total energy + Delta-G solvation = -3650.053130 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.76319 -38.80699 -37.40333 -34.56304 -33.88994 -33.69945 -32.06201 -30.71513 -29.55292 -27.48057 -25.39330 -24.88335 -24.50755 -23.40685 -22.81124 -21.28814 -20.98805 -19.59959 -18.15686 -17.12709 -16.73328 -16.28510 -15.76989 -15.55600 -15.38464 -14.86304 -14.49369 -14.04694 -13.98616 -13.64453 -13.51139 -13.32605 -13.26263 -12.82332 -12.56329 -12.44022 -12.19441 -11.92588 -11.70966 -11.62057 -11.54005 -11.49412 -11.20940 -11.08686 -10.91861 -10.83333 -10.69846 -10.64438 -10.52023 -10.34631 -10.25434 -10.09552 -9.62516 -9.40394 -9.06679 -8.86710 -8.09609 -6.98759 -5.86304 -3.19372 2.98754 3.31172 3.35196 3.40550 3.40983 3.88694 4.37916 4.54987 4.70319 4.78669 4.94037 4.97801 5.12775 5.18550 5.24848 5.30374 5.34657 5.41885 5.43341 5.46800 5.51810 5.64343 5.64894 5.70254 5.74459 5.77176 5.79894 5.82024 5.96186 5.97844 6.02085 6.13787 6.20245 6.21284 6.26234 6.31067 6.37383 6.44571 6.46322 6.59602 6.93224 7.10580 7.17085 7.38522 7.43125 7.87216 7.88964 8.60657 8.95094 9.61183 10.47486 11.30721 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.003826 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.966567 B = 7316.195008 C = 7402.459882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.127 4.127 3 C 0.116 3.884 4 H 0.058 0.942 5 O -0.356 6.356 6 C 0.062 3.938 7 C -0.156 4.156 8 C -0.118 4.118 9 C -0.143 4.143 10 H 0.100 0.900 11 C 0.523 3.477 12 O -0.529 6.529 13 N -0.597 5.597 14 C 0.115 3.885 15 C -0.166 4.166 16 C 0.076 3.924 17 C 0.158 3.842 18 N -0.606 5.606 19 C -0.225 4.225 20 H 0.081 0.919 21 C -0.005 4.005 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.106 3.894 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.111 0.889 45 H 0.037 0.963 46 H 0.076 0.924 47 H 0.255 0.745 48 H 0.046 0.954 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 1.553 -2.638 15.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.165 4.165 3 C 0.057 3.943 4 H 0.076 0.924 5 O -0.274 6.274 6 C -0.015 4.015 7 C -0.194 4.194 8 C -0.155 4.155 9 C -0.165 4.165 10 H 0.118 0.882 11 C 0.311 3.689 12 O -0.406 6.406 13 N -0.329 5.329 14 C -0.008 4.008 15 C -0.224 4.224 16 C -0.029 4.029 17 C 0.032 3.968 18 N -0.333 5.333 19 C -0.352 4.352 20 H 0.099 0.901 21 C -0.201 4.201 22 N -0.567 5.567 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.205 1.205 27 C -0.021 4.021 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.128 0.872 45 H 0.055 0.945 46 H 0.094 0.906 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.791 1.374 -3.157 16.162 hybrid contribution 1.374 0.139 0.905 1.651 sum -14.417 1.513 -2.253 14.670 Atomic orbital electron populations 1.21667 0.95594 1.01150 1.01730 1.21730 0.96355 0.94604 1.03776 1.21835 0.90668 0.94569 0.87191 0.92395 1.88043 1.77636 1.23698 1.38060 1.22509 0.93707 0.83855 1.01442 1.22183 0.97158 1.01462 0.98592 1.21683 1.02406 0.93205 0.98250 1.22085 0.97728 0.97216 0.99438 0.88176 1.20230 0.81626 0.79549 0.87496 1.90649 1.60046 1.54261 1.35648 1.48168 1.08992 1.56402 1.19382 1.21304 0.98437 0.94521 0.86538 1.22143 1.01577 1.00230 0.98449 1.24191 0.93017 0.98633 0.87010 1.22653 0.85755 0.98874 0.89498 1.45714 1.16506 1.44818 1.26248 1.18989 0.93695 1.19645 1.02889 0.90082 1.24781 0.98235 0.98974 0.98151 1.69797 1.30565 1.27434 1.28862 0.86115 0.82428 0.77019 0.80158 1.21556 1.21572 1.20549 1.23009 0.87650 0.94429 0.97048 0.93089 0.93480 0.92046 0.88822 0.91399 0.89279 0.93743 0.90857 0.90830 0.89849 0.90861 0.90105 0.90941 0.91804 0.92226 0.92696 0.87152 0.94509 0.90604 0.93522 0.93614 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.81 37.16 0.36 -1.19 16 2 C -0.13 -1.59 5.21 -26.74 -0.14 -1.72 16 3 C 0.12 1.46 2.22 -26.68 -0.06 1.40 16 4 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 5 O -0.36 -5.00 8.74 -54.54 -0.48 -5.48 16 6 C 0.06 0.71 6.84 37.21 0.25 0.96 16 7 C -0.16 -1.87 5.88 -26.59 -0.16 -2.03 16 8 C -0.12 -1.44 5.13 -26.55 -0.14 -1.58 16 9 C -0.14 -1.88 1.73 -91.63 -0.16 -2.04 16 10 H 0.10 1.24 7.39 -51.93 -0.38 0.86 16 11 C 0.52 8.21 5.26 -10.99 -0.06 8.16 16 12 O -0.53 -9.51 12.91 -13.75 -0.18 -9.69 16 13 N -0.60 -9.55 2.70 -167.90 -0.45 -10.00 16 14 C 0.11 1.79 5.15 -4.04 -0.02 1.77 16 15 C -0.17 -2.45 9.96 37.16 0.37 -2.08 16 16 C 0.08 1.33 3.52 -70.14 -0.25 1.08 16 17 C 0.16 3.45 6.35 -2.98 -0.02 3.43 16 18 N -0.61 -14.67 3.70 -178.07 -0.66 -15.33 16 19 C -0.22 -6.04 10.70 -15.06 -0.16 -6.20 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 22 N -0.92 -26.13 11.38 55.49 0.63 -25.50 16 23 Si 0.91 21.41 29.55 -169.99 -5.02 16.38 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 C 0.11 2.05 8.48 -2.97 -0.03 2.03 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.72 7.82 -51.93 -0.41 0.31 16 31 H 0.09 1.42 5.91 -51.93 -0.31 1.11 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 1.05 7.39 -51.93 -0.38 0.67 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 1.14 5.97 -51.93 -0.31 0.83 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.31 6.18 -51.93 -0.32 0.99 16 40 H 0.07 1.12 7.58 -51.93 -0.39 0.73 16 41 H 0.06 1.02 6.97 -51.93 -0.36 0.66 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.11 1.83 4.69 -51.93 -0.24 1.59 16 45 H 0.04 0.82 5.43 -51.93 -0.28 0.54 16 46 H 0.08 1.85 7.15 -51.93 -0.37 1.48 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.04 0.70 7.54 -51.93 -0.39 0.31 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -30.38 367.75 -9.25 -39.63 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -8.35 Total: 2.67 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.29 Total: 1.76 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.48 Total: -50.83 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.65 Total: -15.17 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.38 -9.25 -39.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950489841.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.409 kcal (2) G-P(sol) polarization free energy of solvation -30.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds