Wall clock time and date at job start Tue Mar 31 2020 10:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47576 * 2 1 4 4 H 1.08999 * 109.48308 * 54.99582 * 3 2 1 5 5 O 1.42907 * 109.47695 * 294.97899 * 3 2 1 6 6 C 1.42903 * 114.09758 * 178.85703 * 5 3 2 7 7 C 1.53098 * 109.41541 * 61.15557 * 6 5 3 8 8 C 1.53179 * 109.16194 * 302.39082 * 7 6 5 9 9 C 1.53095 * 109.48633 * 175.02360 * 3 2 1 10 10 H 1.08999 * 109.51815 * 297.49906 * 9 3 2 11 11 C 1.50700 * 109.52081 * 57.68024 * 9 3 2 12 12 O 1.21280 * 119.99804 * 11.73912 * 11 9 3 13 13 N 1.34774 * 120.00175 * 191.73023 * 11 9 3 14 14 C 1.46500 * 120.00300 * 182.51219 * 13 11 9 15 15 C 1.52999 * 109.46775 * 83.92235 * 14 13 11 16 16 C 1.46503 * 119.99585 * 2.51216 * 13 11 9 17 17 C 1.53944 * 113.74338 * 210.31301 * 16 13 11 18 18 N 1.47581 * 86.11935 * 222.05013 * 17 16 13 19 19 C 1.36934 * 134.49627 * 204.63919 * 18 17 16 20 20 H 1.07997 * 120.00133 * 179.97438 * 19 18 17 21 21 C 1.38814 * 119.99533 * 359.97438 * 19 18 17 22 22 N 1.31615 * 120.00606 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99799 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47034 * 90.00406 * 23 21 19 25 25 H 1.48497 * 109.47355 * 209.99936 * 23 21 19 26 26 H 1.48499 * 109.47197 * 330.00349 * 23 21 19 27 27 C 1.47585 * 91.01300 * 24.64074 * 18 17 16 28 28 H 1.09000 * 109.47214 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47258 * 300.00328 * 1 2 3 30 30 H 1.09001 * 109.47210 * 60.00358 * 1 2 3 31 31 H 1.09002 * 109.47258 * 239.99672 * 2 1 3 32 32 H 1.09004 * 109.46996 * 120.00113 * 2 1 3 33 33 H 1.09001 * 109.48539 * 181.13458 * 6 5 3 34 34 H 1.09003 * 109.48347 * 301.17681 * 6 5 3 35 35 H 1.08997 * 109.52263 * 62.29505 * 7 6 5 36 36 H 1.09003 * 109.52458 * 182.42208 * 7 6 5 37 37 H 1.09002 * 109.54307 * 176.84733 * 8 7 6 38 38 H 1.08991 * 109.54336 * 297.02432 * 8 7 6 39 39 H 1.08998 * 109.46890 * 203.92353 * 14 13 11 40 40 H 1.08992 * 109.46845 * 323.92135 * 14 13 11 41 41 H 1.09005 * 109.47351 * 60.00273 * 15 14 13 42 42 H 1.09007 * 109.46633 * 179.97438 * 15 14 13 43 43 H 1.08998 * 109.47508 * 299.99740 * 15 14 13 44 44 H 1.08998 * 112.94713 * 342.04747 * 16 13 11 45 45 H 1.09004 * 113.76449 * 336.35032 * 17 16 13 46 46 H 1.08993 * 113.77467 * 107.74821 * 17 16 13 47 47 H 0.96991 * 120.00555 * 180.02562 * 22 21 19 48 48 H 1.09005 * 113.76531 * 221.06165 * 27 18 17 49 49 H 1.09000 * 113.87504 * 89.67798 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9817 0.8417 5 8 1.6625 2.0813 -1.2213 6 6 2.0692 3.4481 -1.3147 7 6 3.5963 3.5307 -1.2426 8 6 4.0734 2.8884 0.0636 9 6 3.5659 1.4445 0.1252 10 1 3.8538 0.9972 1.0766 11 6 4.1652 0.6514 -1.0075 12 8 3.4734 0.3161 -1.9455 13 7 5.4699 0.3148 -0.9781 14 6 6.0654 -0.4083 -2.1044 15 6 6.4736 0.5879 -3.1915 16 6 6.2926 0.6722 0.1802 17 6 7.7726 0.9199 -0.1634 18 7 8.0807 0.1638 1.0660 19 6 9.1411 0.1303 1.9317 20 1 9.1212 -0.5319 2.7846 21 6 10.2416 0.9476 1.7130 22 7 10.2657 1.7550 0.6739 23 14 11.6879 0.9025 2.8944 24 1 12.6670 -0.1173 2.4395 25 1 12.3414 2.2355 2.9281 26 1 11.2053 0.5532 4.2546 27 6 6.7868 -0.5418 0.9876 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.7271 3.8653 -2.2618 34 1 1.6353 4.0137 -0.4901 35 1 4.0302 2.9993 -2.0895 36 1 3.9063 4.5753 -1.2704 37 1 5.1630 2.8936 0.0958 38 1 3.6810 3.4505 0.9109 39 1 6.9451 -0.9532 -1.7620 40 1 5.3379 -1.1111 -2.5103 41 1 7.2012 1.2909 -2.7855 42 1 6.9171 0.0499 -4.0294 43 1 5.5939 1.1328 -3.5339 44 1 5.8459 1.4547 0.7936 45 1 8.1001 0.4246 -1.0775 46 1 8.0645 1.9691 -0.1186 47 1 11.0349 2.3257 0.5208 48 1 6.2916 -0.6596 1.9514 49 1 6.8230 -1.4669 0.4122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950489841.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:37 Heat of formation + Delta-G solvation = -46.896295 kcal Electronic energy + Delta-G solvation = -28282.747179 eV Core-core repulsion = 24631.971156 eV Total energy + Delta-G solvation = -3650.776024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.96139 -40.14109 -38.77696 -35.99678 -34.88286 -34.73378 -33.96557 -31.93793 -30.61968 -29.33063 -26.60236 -26.29062 -25.61120 -25.14571 -23.94229 -22.29742 -22.18034 -21.08417 -19.51059 -18.76399 -18.07949 -17.49928 -16.92220 -16.83675 -16.60680 -16.57460 -15.73605 -15.47414 -15.15779 -14.94966 -14.71279 -14.49617 -14.26843 -14.18176 -13.98197 -13.67589 -13.37252 -13.28319 -13.21651 -13.02674 -12.87882 -12.65107 -12.55319 -12.49818 -12.41080 -12.08221 -12.04400 -11.98736 -11.90277 -11.67441 -11.49398 -11.46560 -11.20435 -10.85431 -10.49061 -10.19358 -9.50123 -8.92916 -7.90850 -5.24560 1.48341 1.49012 1.57834 1.73567 2.02885 2.49813 2.96100 3.28606 3.38088 3.53039 3.71020 3.77241 3.81074 3.96868 4.02466 4.17240 4.20686 4.29750 4.33739 4.40361 4.40672 4.45979 4.52866 4.53673 4.62692 4.72509 4.78422 4.79670 4.85774 4.87375 4.88255 4.92923 5.00055 5.03960 5.15477 5.17456 5.21437 5.25102 5.30012 5.40618 5.42189 5.49693 5.52128 5.69338 5.91113 6.47660 6.55409 6.91543 7.33238 7.60128 8.53125 9.25765 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.003826 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.966567 B = 7316.195008 C = 7402.459882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.114 3.886 4 H 0.084 0.916 5 O -0.380 6.380 6 C 0.059 3.941 7 C -0.154 4.154 8 C -0.116 4.116 9 C -0.143 4.143 10 H 0.113 0.887 11 C 0.524 3.476 12 O -0.551 6.551 13 N -0.598 5.598 14 C 0.114 3.886 15 C -0.156 4.156 16 C 0.110 3.890 17 C 0.159 3.841 18 N -0.633 5.633 19 C -0.234 4.234 20 H 0.086 0.914 21 C -0.060 4.060 22 N -0.950 5.950 23 Si 0.976 3.024 24 H -0.290 1.290 25 H -0.295 1.295 26 H -0.267 1.267 27 C 0.108 3.892 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.126 0.874 45 H 0.028 0.972 46 H 0.045 0.955 47 H 0.249 0.751 48 H 0.065 0.935 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.102 1.712 -1.065 17.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.056 3.944 4 H 0.101 0.899 5 O -0.299 6.299 6 C -0.017 4.017 7 C -0.191 4.191 8 C -0.154 4.154 9 C -0.164 4.164 10 H 0.131 0.869 11 C 0.313 3.687 12 O -0.429 6.429 13 N -0.330 5.330 14 C -0.008 4.008 15 C -0.214 4.214 16 C 0.006 3.994 17 C 0.033 3.967 18 N -0.360 5.360 19 C -0.362 4.362 20 H 0.104 0.896 21 C -0.254 4.254 22 N -0.599 5.599 23 Si 0.804 3.196 24 H -0.217 1.217 25 H -0.221 1.221 26 H -0.191 1.191 27 C -0.018 4.018 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.143 0.857 45 H 0.046 0.954 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -17.280 1.512 -1.583 17.418 hybrid contribution 1.775 0.046 0.348 1.809 sum -15.505 1.558 -1.236 15.632 Atomic orbital electron populations 1.21616 0.94381 1.01717 1.01883 1.21717 0.97466 0.94528 1.02812 1.21962 0.89983 0.94825 0.87592 0.89857 1.88021 1.77874 1.25031 1.39007 1.22655 0.93092 0.83118 1.02871 1.22157 0.97703 1.02015 0.97260 1.21698 1.01343 0.92948 0.99386 1.22181 0.98376 0.97317 0.98561 0.86897 1.20710 0.80973 0.79037 0.87935 1.90648 1.60336 1.55049 1.36835 1.48145 1.09245 1.56587 1.19040 1.21308 0.98162 0.94688 0.86676 1.22038 1.00803 0.99786 0.98759 1.23684 0.90848 0.97980 0.86934 1.22520 0.88787 0.96712 0.88672 1.46025 1.17384 1.46099 1.26539 1.19369 0.94456 1.19026 1.03350 0.89630 1.25556 1.00788 0.99155 0.99863 1.69978 1.30897 1.28391 1.30610 0.85122 0.79214 0.76393 0.78851 1.21701 1.22120 1.19116 1.23142 0.85558 0.94817 0.98317 0.92392 0.91725 0.93390 0.91977 0.90098 0.88693 0.91269 0.93976 0.89116 0.91576 0.88141 0.90854 0.90641 0.93355 0.90409 0.93404 0.85653 0.95418 0.93690 0.94232 0.91677 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.81 71.98 0.71 -2.00 16 2 C -0.13 -2.95 5.21 30.59 0.16 -2.79 16 3 C 0.11 2.60 2.22 30.62 0.07 2.67 16 4 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 5 O -0.38 -10.06 8.74 -130.52 -1.14 -11.20 16 6 C 0.06 1.22 6.84 72.01 0.49 1.72 16 7 C -0.15 -3.46 5.88 30.69 0.18 -3.28 16 8 C -0.12 -2.59 5.13 30.71 0.16 -2.44 16 9 C -0.14 -3.47 1.73 -11.45 -0.02 -3.49 16 10 H 0.11 2.45 7.39 -2.39 -0.02 2.44 16 11 C 0.52 16.05 5.26 87.66 0.46 16.51 16 12 O -0.55 -19.73 12.91 15.43 0.20 -19.53 16 13 N -0.60 -18.87 2.70 -803.51 -2.17 -21.04 16 14 C 0.11 3.57 5.15 86.38 0.44 4.02 16 15 C -0.16 -4.68 9.96 71.98 0.72 -3.96 16 16 C 0.11 3.78 3.52 46.75 0.16 3.95 16 17 C 0.16 7.08 6.35 86.48 0.55 7.63 16 18 N -0.63 -30.60 3.70 -717.29 -2.65 -33.25 16 19 C -0.23 -12.51 10.70 84.03 0.90 -11.61 16 20 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 21 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 22 N -0.95 -55.12 11.38 21.65 0.25 -54.87 16 23 Si 0.98 44.10 29.55 68.60 2.03 46.13 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 C 0.11 4.04 8.48 86.48 0.73 4.77 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.06 7.82 -2.39 -0.02 1.04 16 31 H 0.06 1.85 5.91 -2.39 -0.01 1.83 16 32 H 0.08 1.61 8.14 -2.38 -0.02 1.60 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.04 1.20 7.39 -2.39 -0.02 1.19 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.72 5.97 -2.39 -0.01 1.70 16 38 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 2.40 6.18 -2.39 -0.01 2.39 16 40 H 0.08 2.33 7.58 -2.39 -0.02 2.31 16 41 H 0.05 1.59 6.97 -2.38 -0.02 1.57 16 42 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.13 3.98 4.69 -2.39 -0.01 3.97 16 45 H 0.03 1.29 5.43 -2.38 -0.01 1.27 16 46 H 0.04 2.27 7.15 -2.39 -0.02 2.26 16 47 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 48 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 49 H 0.04 1.52 7.54 -2.39 -0.02 1.51 16 Total: -1.00 -66.03 367.75 3.62 -62.42 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.92 Total: 22.47 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: 6.18 Total: 8.88 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -4.57 Total: -109.16 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.94 Total: -30.73 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -66.03 3.62 -62.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950489841.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.523 kcal (2) G-P(sol) polarization free energy of solvation -66.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds