Wall clock time and date at job start Tue Mar 31 2020 10:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47345 * 2 1 4 4 H 1.09008 * 109.48190 * 54.97551 * 3 2 1 5 5 O 1.42895 * 109.48263 * 294.94848 * 3 2 1 6 6 C 1.42911 * 114.09636 * 178.85502 * 5 3 2 7 7 C 1.53091 * 109.41384 * 61.15935 * 6 5 3 8 8 C 1.53180 * 109.16220 * 302.39067 * 7 6 5 9 9 C 1.53086 * 109.48043 * 174.99839 * 3 2 1 10 10 H 1.09001 * 109.52551 * 57.69507 * 9 3 2 11 11 C 1.50700 * 109.57926 * 297.53426 * 9 3 2 12 12 O 1.21280 * 119.99885 * 337.78423 * 11 9 3 13 13 N 1.34778 * 119.99936 * 157.78921 * 11 9 3 14 14 C 1.46499 * 119.99706 * 186.51110 * 13 11 9 15 15 C 1.52994 * 109.47498 * 87.44198 * 14 13 11 16 16 C 1.46500 * 120.00354 * 6.50351 * 13 11 9 17 17 C 1.53945 * 113.74266 * 214.63098 * 16 13 11 18 18 N 1.47813 * 86.03617 * 222.08371 * 17 16 13 19 19 C 1.36933 * 134.45661 * 204.64569 * 18 17 16 20 20 H 1.08005 * 119.99909 * 179.86183 * 19 18 17 21 21 C 1.38812 * 120.00110 * 359.86427 * 19 18 17 22 22 N 1.31617 * 119.99730 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99988 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47258 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46889 * 119.99999 * 23 21 19 26 26 H 1.48495 * 109.47647 * 239.99850 * 23 21 19 27 27 C 1.47586 * 91.04854 * 24.54896 * 18 17 16 28 28 H 1.08999 * 109.47111 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46349 * 299.99636 * 1 2 3 30 30 H 1.08992 * 109.47129 * 59.99220 * 1 2 3 31 31 H 1.09002 * 109.47102 * 240.00905 * 2 1 3 32 32 H 1.08999 * 109.47743 * 120.00559 * 2 1 3 33 33 H 1.08998 * 109.47896 * 301.17256 * 6 5 3 34 34 H 1.09004 * 109.48661 * 181.14584 * 6 5 3 35 35 H 1.08994 * 109.51871 * 182.48880 * 7 6 5 36 36 H 1.08997 * 109.57228 * 62.32488 * 7 6 5 37 37 H 1.09006 * 109.54317 * 297.11703 * 8 7 6 38 38 H 1.08999 * 109.61547 * 176.89374 * 8 7 6 39 39 H 1.09007 * 109.46954 * 207.44271 * 14 13 11 40 40 H 1.09001 * 109.47091 * 327.43566 * 14 13 11 41 41 H 1.08998 * 109.47609 * 304.66920 * 15 14 13 42 42 H 1.09002 * 109.47092 * 64.66582 * 15 14 13 43 43 H 1.09004 * 109.47332 * 184.66656 * 15 14 13 44 44 H 1.09003 * 112.93875 * 346.22203 * 16 13 11 45 45 H 1.08997 * 113.76775 * 336.34780 * 17 16 13 46 46 H 1.09001 * 113.77157 * 107.74692 * 17 16 13 47 47 H 0.97004 * 119.99783 * 179.97438 * 22 21 19 48 48 H 1.09008 * 113.76633 * 221.15444 * 27 18 17 49 49 H 1.08997 * 113.87077 * 89.76927 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9819 0.8416 5 8 1.6632 2.0813 -1.2214 6 6 2.0700 3.4481 -1.3147 7 6 3.5969 3.5307 -1.2419 8 6 4.0734 2.8885 0.0646 9 6 3.5657 1.4445 0.1258 10 1 3.9996 0.8710 -0.6933 11 6 3.9649 0.8257 1.4407 12 8 3.1738 0.7906 2.3593 13 7 5.2009 0.3113 1.5957 14 6 5.5432 -0.4161 2.8205 15 6 5.1671 -1.8904 2.6602 16 6 6.2021 0.4794 0.5395 17 6 7.1539 -0.7215 0.3909 18 7 8.2293 0.2809 0.2375 19 6 9.4626 0.2808 -0.3576 20 1 10.0749 1.1701 -0.3314 21 6 9.9259 -0.8623 -0.9946 22 7 9.1794 -1.9458 -1.0270 23 14 11.6079 -0.8621 -1.8070 24 1 12.2423 0.4691 -1.6315 25 1 12.4609 -1.9031 -1.1791 26 1 11.4581 -1.1524 -3.2555 27 6 7.4395 1.2819 0.9806 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8898 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6355 4.0137 -0.4905 34 1 1.7281 3.8653 -2.2620 35 1 3.9068 4.5753 -1.2684 36 1 4.0321 2.9999 -2.0886 37 1 3.6792 3.4497 0.9118 38 1 5.1629 2.8938 0.0989 39 1 6.6142 -0.3324 3.0054 40 1 4.9950 0.0095 3.6610 41 1 4.1132 -1.9696 2.3933 42 1 5.7755 -2.3371 1.8738 43 1 5.3446 -2.4148 3.5991 44 1 5.7724 0.8181 -0.4032 45 1 7.2424 -1.3262 1.2935 46 1 6.9747 -1.3159 -0.5050 47 1 9.5030 -2.7445 -1.4724 48 1 7.4880 2.2841 0.5545 49 1 7.6111 1.2686 2.0569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950489842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:42 Heat of formation + Delta-G solvation = -37.394217 kcal Electronic energy + Delta-G solvation = -27988.299402 eV Core-core repulsion = 24337.935419 eV Total energy + Delta-G solvation = -3650.363983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.68681 -38.97765 -37.69863 -34.61914 -34.00186 -33.71689 -32.06800 -30.85045 -29.60380 -27.51145 -25.45841 -24.96602 -24.69903 -23.44555 -22.67732 -21.29510 -20.57894 -19.93780 -18.30338 -17.55517 -16.82452 -16.37656 -15.90620 -15.62567 -15.09515 -14.85646 -14.55339 -14.30441 -13.99631 -13.76092 -13.64654 -13.32524 -13.31190 -12.95106 -12.60200 -12.50582 -12.17891 -12.01982 -11.79457 -11.64761 -11.59424 -11.40994 -11.18163 -11.16474 -10.98474 -10.89539 -10.82809 -10.75394 -10.61462 -10.37884 -10.24392 -10.09862 -9.63699 -9.58649 -9.26763 -8.88756 -8.20406 -6.99832 -5.86969 -3.20100 2.80825 3.20933 3.33760 3.39539 3.41618 3.76142 4.36656 4.51693 4.64541 4.76064 4.82921 4.97719 5.10322 5.12218 5.16501 5.26671 5.33644 5.37049 5.41023 5.43375 5.47592 5.60810 5.62447 5.68675 5.71197 5.74283 5.75320 5.85389 5.91632 5.91848 6.02377 6.05562 6.13385 6.15463 6.20152 6.25294 6.35548 6.36669 6.40463 6.55634 6.85495 7.08742 7.14061 7.19736 7.42235 7.77066 7.86838 8.41621 8.94204 9.60505 10.46084 11.30191 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.004104 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.883625 B = 6820.853646 C = 7570.287517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.113 3.887 4 H 0.069 0.931 5 O -0.375 6.375 6 C 0.060 3.940 7 C -0.154 4.154 8 C -0.113 4.113 9 C -0.140 4.140 10 H 0.103 0.897 11 C 0.525 3.475 12 O -0.552 6.552 13 N -0.592 5.592 14 C 0.112 3.888 15 C -0.169 4.169 16 C 0.078 3.922 17 C 0.155 3.845 18 N -0.606 5.606 19 C -0.225 4.225 20 H 0.082 0.918 21 C -0.004 4.004 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.108 3.892 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.110 0.890 45 H 0.040 0.960 46 H 0.077 0.923 47 H 0.255 0.745 48 H 0.046 0.954 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.002 7.181 2.311 15.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C 0.055 3.945 4 H 0.086 0.914 5 O -0.294 6.294 6 C -0.017 4.017 7 C -0.192 4.192 8 C -0.150 4.150 9 C -0.162 4.162 10 H 0.121 0.879 11 C 0.313 3.687 12 O -0.431 6.431 13 N -0.323 5.323 14 C -0.011 4.011 15 C -0.227 4.227 16 C -0.027 4.027 17 C 0.030 3.970 18 N -0.333 5.333 19 C -0.352 4.352 20 H 0.100 0.900 21 C -0.201 4.201 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.216 1.216 27 C -0.019 4.019 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.128 0.872 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.224 6.920 2.470 16.010 hybrid contribution 1.425 0.020 -0.217 1.441 sum -12.799 6.940 2.254 14.733 Atomic orbital electron populations 1.21661 0.95279 1.01306 1.01912 1.21592 0.96763 0.94175 1.03027 1.21870 0.90981 0.94717 0.86965 0.91356 1.87934 1.78185 1.24512 1.38795 1.22571 0.93882 0.83378 1.01860 1.22188 0.96843 1.01734 0.98410 1.21578 1.02058 0.93251 0.98162 1.22015 0.98621 0.98381 0.97175 0.87901 1.20317 0.81649 0.77657 0.89088 1.90638 1.51277 1.58785 1.42409 1.48166 1.11586 1.53496 1.19101 1.21352 1.01235 0.91789 0.86686 1.22219 1.01886 0.96162 1.02414 1.24177 0.86891 1.01559 0.90026 1.22760 0.82989 0.91063 1.00236 1.45752 1.16773 1.09568 1.61169 1.19029 0.91133 0.97874 1.27180 0.90021 1.24785 0.98720 0.95651 1.00978 1.69813 1.36854 1.02344 1.47594 0.86042 0.83311 0.77433 0.78927 1.20412 1.21675 1.21591 1.22977 0.88952 0.94261 0.95681 0.92947 0.92970 0.92220 0.91371 0.89955 0.93340 0.88910 0.90521 0.90515 0.91392 0.90211 0.90100 0.90558 0.92794 0.91299 0.92089 0.87231 0.94261 0.90506 0.93537 0.93570 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.81 37.16 0.36 -1.26 16 2 C -0.12 -1.53 5.45 -26.73 -0.15 -1.67 16 3 C 0.11 1.48 1.79 -26.69 -0.05 1.43 16 4 H 0.07 0.95 7.80 -51.92 -0.41 0.55 16 5 O -0.38 -4.78 9.94 -35.23 -0.35 -5.13 16 6 C 0.06 0.60 6.84 37.20 0.25 0.86 16 7 C -0.15 -1.57 6.14 -26.59 -0.16 -1.73 16 8 C -0.11 -1.35 5.10 -26.54 -0.14 -1.49 16 9 C -0.14 -1.90 1.36 -91.63 -0.13 -2.03 16 10 H 0.10 1.45 6.61 -51.93 -0.34 1.11 16 11 C 0.52 8.19 6.01 -10.98 -0.07 8.13 16 12 O -0.55 -9.72 14.62 5.56 0.08 -9.64 16 13 N -0.59 -9.40 2.69 -167.91 -0.45 -9.85 16 14 C 0.11 1.70 5.25 -4.05 -0.02 1.68 16 15 C -0.17 -2.44 9.96 37.15 0.37 -2.07 16 16 C 0.08 1.36 3.46 -70.15 -0.24 1.12 16 17 C 0.16 3.39 6.40 -2.84 -0.02 3.37 16 18 N -0.61 -14.60 3.70 -177.88 -0.66 -15.26 16 19 C -0.22 -6.03 10.70 -15.06 -0.16 -6.19 16 20 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 21 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 22 N -0.92 -26.17 11.39 55.49 0.63 -25.54 16 23 Si 0.91 21.43 29.55 -169.99 -5.02 16.40 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.11 2.08 8.46 -2.97 -0.03 2.05 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.66 7.82 -51.93 -0.41 0.26 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.17 6.47 -51.93 -0.34 0.83 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 1.00 7.04 -51.93 -0.37 0.64 16 39 H 0.08 1.27 6.29 -51.93 -0.33 0.94 16 40 H 0.08 1.15 7.42 -51.93 -0.39 0.76 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 1.09 6.25 -51.93 -0.32 0.77 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.11 1.85 5.45 -51.93 -0.28 1.57 16 45 H 0.04 0.87 5.11 -51.93 -0.27 0.60 16 46 H 0.08 1.89 7.16 -51.93 -0.37 1.51 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 49 H 0.04 0.69 7.17 -51.93 -0.37 0.32 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -29.94 371.74 -8.81 -38.75 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -8.38 Total: 2.67 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.26 Total: 2.00 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.48 Total: -50.65 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.27 Total: -14.77 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.94 -8.81 -38.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950489842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.352 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds