Wall clock time and date at job start Tue Mar 31 2020 10:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47345 * 2 1 4 4 H 1.09008 * 109.48190 * 54.97551 * 3 2 1 5 5 O 1.42895 * 109.48263 * 294.94848 * 3 2 1 6 6 C 1.42911 * 114.09636 * 178.85502 * 5 3 2 7 7 C 1.53091 * 109.41384 * 61.15935 * 6 5 3 8 8 C 1.53180 * 109.16220 * 302.39067 * 7 6 5 9 9 C 1.53086 * 109.48043 * 174.99839 * 3 2 1 10 10 H 1.09001 * 109.52551 * 57.69507 * 9 3 2 11 11 C 1.50700 * 109.57926 * 297.53426 * 9 3 2 12 12 O 1.21280 * 119.99885 * 337.78423 * 11 9 3 13 13 N 1.34778 * 119.99936 * 157.78921 * 11 9 3 14 14 C 1.46499 * 119.99706 * 186.51110 * 13 11 9 15 15 C 1.52994 * 109.47498 * 87.44198 * 14 13 11 16 16 C 1.46500 * 120.00354 * 6.50351 * 13 11 9 17 17 C 1.53945 * 113.74266 * 214.63098 * 16 13 11 18 18 N 1.47813 * 86.03617 * 222.08371 * 17 16 13 19 19 C 1.36933 * 134.45661 * 204.64569 * 18 17 16 20 20 H 1.08005 * 119.99909 * 179.86183 * 19 18 17 21 21 C 1.38812 * 120.00110 * 359.86427 * 19 18 17 22 22 N 1.31617 * 119.99730 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99988 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47258 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46889 * 119.99999 * 23 21 19 26 26 H 1.48495 * 109.47647 * 239.99850 * 23 21 19 27 27 C 1.47586 * 91.04854 * 24.54896 * 18 17 16 28 28 H 1.08999 * 109.47111 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46349 * 299.99636 * 1 2 3 30 30 H 1.08992 * 109.47129 * 59.99220 * 1 2 3 31 31 H 1.09002 * 109.47102 * 240.00905 * 2 1 3 32 32 H 1.08999 * 109.47743 * 120.00559 * 2 1 3 33 33 H 1.08998 * 109.47896 * 301.17256 * 6 5 3 34 34 H 1.09004 * 109.48661 * 181.14584 * 6 5 3 35 35 H 1.08994 * 109.51871 * 182.48880 * 7 6 5 36 36 H 1.08997 * 109.57228 * 62.32488 * 7 6 5 37 37 H 1.09006 * 109.54317 * 297.11703 * 8 7 6 38 38 H 1.08999 * 109.61547 * 176.89374 * 8 7 6 39 39 H 1.09007 * 109.46954 * 207.44271 * 14 13 11 40 40 H 1.09001 * 109.47091 * 327.43566 * 14 13 11 41 41 H 1.08998 * 109.47609 * 304.66920 * 15 14 13 42 42 H 1.09002 * 109.47092 * 64.66582 * 15 14 13 43 43 H 1.09004 * 109.47332 * 184.66656 * 15 14 13 44 44 H 1.09003 * 112.93875 * 346.22203 * 16 13 11 45 45 H 1.08997 * 113.76775 * 336.34780 * 17 16 13 46 46 H 1.09001 * 113.77157 * 107.74692 * 17 16 13 47 47 H 0.97004 * 119.99783 * 179.97438 * 22 21 19 48 48 H 1.09008 * 113.76633 * 221.15444 * 27 18 17 49 49 H 1.08997 * 113.87077 * 89.76927 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9819 0.8416 5 8 1.6632 2.0813 -1.2214 6 6 2.0700 3.4481 -1.3147 7 6 3.5969 3.5307 -1.2419 8 6 4.0734 2.8885 0.0646 9 6 3.5657 1.4445 0.1258 10 1 3.9996 0.8710 -0.6933 11 6 3.9649 0.8257 1.4407 12 8 3.1738 0.7906 2.3593 13 7 5.2009 0.3113 1.5957 14 6 5.5432 -0.4161 2.8205 15 6 5.1671 -1.8904 2.6602 16 6 6.2021 0.4794 0.5395 17 6 7.1539 -0.7215 0.3909 18 7 8.2293 0.2809 0.2375 19 6 9.4626 0.2808 -0.3576 20 1 10.0749 1.1701 -0.3314 21 6 9.9259 -0.8623 -0.9946 22 7 9.1794 -1.9458 -1.0270 23 14 11.6079 -0.8621 -1.8070 24 1 12.2423 0.4691 -1.6315 25 1 12.4609 -1.9031 -1.1791 26 1 11.4581 -1.1524 -3.2555 27 6 7.4395 1.2819 0.9806 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8898 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6355 4.0137 -0.4905 34 1 1.7281 3.8653 -2.2620 35 1 3.9068 4.5753 -1.2684 36 1 4.0321 2.9999 -2.0886 37 1 3.6792 3.4497 0.9118 38 1 5.1629 2.8938 0.0989 39 1 6.6142 -0.3324 3.0054 40 1 4.9950 0.0095 3.6610 41 1 4.1132 -1.9696 2.3933 42 1 5.7755 -2.3371 1.8738 43 1 5.3446 -2.4148 3.5991 44 1 5.7724 0.8181 -0.4032 45 1 7.2424 -1.3262 1.2935 46 1 6.9747 -1.3159 -0.5050 47 1 9.5030 -2.7445 -1.4724 48 1 7.4880 2.2841 0.5545 49 1 7.6111 1.2686 2.0569 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950489842.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:41 Heat of formation + Delta-G solvation = -54.362339 kcal Electronic energy + Delta-G solvation = -27989.035195 eV Core-core repulsion = 24337.935419 eV Total energy + Delta-G solvation = -3651.099776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91703 -40.21379 -39.12228 -36.07417 -34.95761 -34.77714 -33.97285 -32.03793 -30.67436 -29.36585 -26.68370 -26.30219 -25.81980 -25.19055 -23.83472 -22.29723 -21.77729 -21.34173 -19.64676 -18.99524 -18.47046 -17.58495 -17.09990 -16.83048 -16.65461 -16.18748 -15.71712 -15.56814 -15.52784 -14.98881 -14.68686 -14.57027 -14.36994 -14.23380 -13.96313 -13.78710 -13.53203 -13.32487 -13.22743 -12.99111 -12.92178 -12.72127 -12.60465 -12.54503 -12.25927 -12.16712 -12.08965 -11.96500 -11.86957 -11.81224 -11.73647 -11.49479 -11.19594 -10.90388 -10.70980 -10.35769 -9.60974 -8.93876 -7.91651 -5.25201 1.47809 1.48144 1.53591 1.58247 1.91599 2.48408 2.80631 3.26936 3.35311 3.49530 3.59373 3.72342 3.78538 3.90440 4.05432 4.11701 4.17996 4.21247 4.23752 4.36017 4.37302 4.40699 4.48614 4.52033 4.56735 4.72859 4.76367 4.79742 4.83438 4.86447 4.89211 4.91302 4.97211 5.01791 5.09773 5.12047 5.21019 5.22673 5.28009 5.32223 5.39805 5.41550 5.48658 5.62029 5.90103 6.27210 6.42173 6.90696 7.12187 7.59427 8.51879 9.25353 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.015861 B = 0.004104 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.883625 B = 6820.853646 C = 7570.287517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.119 3.881 4 H 0.061 0.939 5 O -0.386 6.386 6 C 0.053 3.947 7 C -0.149 4.149 8 C -0.111 4.111 9 C -0.138 4.138 10 H 0.097 0.903 11 C 0.528 3.472 12 O -0.569 6.569 13 N -0.592 5.592 14 C 0.111 3.889 15 C -0.161 4.161 16 C 0.111 3.889 17 C 0.156 3.844 18 N -0.634 5.634 19 C -0.232 4.232 20 H 0.087 0.913 21 C -0.061 4.061 22 N -0.951 5.951 23 Si 0.976 3.024 24 H -0.265 1.265 25 H -0.295 1.295 26 H -0.292 1.292 27 C 0.113 3.887 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.035 0.965 46 H 0.043 0.957 47 H 0.249 0.751 48 H 0.064 0.936 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.529 8.931 2.242 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.157 4.157 3 C 0.061 3.939 4 H 0.079 0.921 5 O -0.305 6.305 6 C -0.023 4.023 7 C -0.187 4.187 8 C -0.149 4.149 9 C -0.160 4.160 10 H 0.115 0.885 11 C 0.317 3.683 12 O -0.449 6.449 13 N -0.323 5.323 14 C -0.011 4.011 15 C -0.219 4.219 16 C 0.006 3.994 17 C 0.030 3.970 18 N -0.361 5.361 19 C -0.360 4.360 20 H 0.104 0.896 21 C -0.254 4.254 22 N -0.600 5.600 23 Si 0.804 3.196 24 H -0.189 1.189 25 H -0.222 1.222 26 H -0.219 1.219 27 C -0.013 4.013 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.137 0.863 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.769 8.707 2.421 17.315 hybrid contribution 1.535 -0.490 -0.137 1.617 sum -13.234 8.218 2.284 15.744 Atomic orbital electron populations 1.21618 0.93935 1.02053 1.02019 1.21576 0.98006 0.94083 1.02042 1.21739 0.90369 0.94728 0.87099 0.92060 1.87924 1.78337 1.25983 1.38283 1.22812 0.93870 0.82183 1.03422 1.22176 0.96849 1.02757 0.96876 1.21594 1.01703 0.92127 0.99464 1.22035 0.99198 0.99296 0.95442 0.88526 1.20627 0.80983 0.77043 0.89602 1.90631 1.51513 1.59419 1.43319 1.48119 1.11547 1.53800 1.18870 1.21406 1.01016 0.92149 0.86579 1.22136 1.01126 0.95805 1.02824 1.23632 0.86580 0.98415 0.90740 1.22643 0.84116 0.91807 0.98466 1.46054 1.16615 1.11581 1.61836 1.19400 0.92170 0.97908 1.26546 0.89573 1.25558 1.02074 0.95558 1.02227 1.69991 1.38361 1.02735 1.48878 0.85054 0.79392 0.77684 0.77453 1.18894 1.22209 1.21900 1.23095 0.88245 0.94319 0.95686 0.91944 0.92895 0.91979 0.91674 0.91550 0.92392 0.86832 0.88293 0.91170 0.91122 0.90682 0.90578 0.89921 0.93139 0.93172 0.90039 0.86301 0.94733 0.93822 0.94220 0.91750 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.81 71.98 0.71 -2.27 16 2 C -0.12 -3.03 5.45 30.60 0.17 -2.86 16 3 C 0.12 3.00 1.79 30.62 0.05 3.05 16 4 H 0.06 1.64 7.80 -2.38 -0.02 1.62 16 5 O -0.39 -9.15 9.94 -148.98 -1.48 -10.63 16 6 C 0.05 0.94 6.84 72.01 0.49 1.43 16 7 C -0.15 -2.65 6.14 30.68 0.19 -2.47 16 8 C -0.11 -2.44 5.10 30.72 0.16 -2.29 16 9 C -0.14 -3.60 1.36 -11.45 -0.02 -3.62 16 10 H 0.10 2.66 6.61 -2.39 -0.02 2.64 16 11 C 0.53 16.03 6.01 87.66 0.53 16.56 16 12 O -0.57 -19.53 14.62 -3.03 -0.04 -19.58 16 13 N -0.59 -18.39 2.69 -803.53 -2.16 -20.56 16 14 C 0.11 3.30 5.25 86.38 0.45 3.75 16 15 C -0.16 -4.60 9.96 71.98 0.72 -3.89 16 16 C 0.11 3.83 3.46 46.75 0.16 3.99 16 17 C 0.16 6.91 6.40 86.44 0.55 7.47 16 18 N -0.63 -30.51 3.70 -716.68 -2.65 -33.16 16 19 C -0.23 -12.40 10.70 84.03 0.90 -11.50 16 20 H 0.09 4.40 7.83 -2.91 -0.02 4.38 16 21 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 22 N -0.95 -55.39 11.39 21.65 0.25 -55.15 16 23 Si 0.98 44.25 29.55 68.60 2.03 46.27 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 27 C 0.11 4.17 8.46 86.48 0.73 4.90 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.29 7.82 -2.39 -0.02 1.27 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.88 6.47 -2.39 -0.02 1.87 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.07 1.72 7.04 -2.39 -0.02 1.70 16 39 H 0.08 2.34 6.29 -2.38 -0.01 2.33 16 40 H 0.08 2.39 7.42 -2.39 -0.02 2.37 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.62 6.25 -2.39 -0.01 1.61 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.12 3.93 5.45 -2.39 -0.01 3.91 16 45 H 0.04 1.57 5.11 -2.39 -0.01 1.56 16 46 H 0.04 2.22 7.16 -2.39 -0.02 2.21 16 47 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 48 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 49 H 0.05 1.63 7.17 -2.39 -0.02 1.61 16 Total: -1.00 -63.89 371.74 3.11 -60.78 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.92 Total: 22.63 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.26 Total: 9.39 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -4.57 Total: -108.86 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.53 Total: -30.21 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -63.89 3.11 -60.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950489842.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.413 kcal (2) G-P(sol) polarization free energy of solvation -63.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds