Wall clock time and date at job start Tue Mar 31 2020 10:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47103 * 2 1 4 4 H 1.09003 * 109.49076 * 54.97186 * 3 2 1 5 5 O 1.42902 * 109.47947 * 294.94225 * 3 2 1 6 6 C 1.42905 * 114.09655 * 178.86133 * 5 3 2 7 7 C 1.53089 * 109.41780 * 61.15441 * 6 5 3 8 8 C 1.53177 * 109.16312 * 302.39215 * 7 6 5 9 9 C 1.53091 * 109.48199 * 174.99991 * 3 2 1 10 10 H 1.09003 * 109.57352 * 297.52761 * 9 3 2 11 11 C 1.50707 * 109.52213 * 57.68358 * 9 3 2 12 12 O 1.21275 * 119.99755 * 14.65393 * 11 9 3 13 13 N 1.34773 * 120.00000 * 194.64998 * 11 9 3 14 14 C 1.48215 * 119.97261 * 356.28915 * 13 11 9 15 15 C 1.47143 * 110.34730 * 102.50582 * 14 13 11 16 16 C 1.53243 * 111.81145 * 58.22366 * 15 14 13 17 17 N 1.43465 * 108.26472 * 281.68532 * 16 15 14 18 18 C 1.36943 * 118.93291 * 273.77568 * 17 16 15 19 19 H 1.07997 * 120.00284 * 35.34313 * 18 17 16 20 20 C 1.38813 * 119.99625 * 215.32876 * 18 17 16 21 21 N 1.31617 * 119.99830 * 23.87049 * 20 18 17 22 22 Si 1.86797 * 120.00067 * 203.86365 * 20 18 17 23 23 H 1.48499 * 109.46991 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47114 * 240.00447 * 22 20 18 25 25 H 1.48496 * 109.47314 * 120.00305 * 22 20 18 26 26 C 1.48852 * 122.12223 * 93.50155 * 17 16 15 27 27 C 1.43614 * 119.97325 * 176.30818 * 13 11 9 28 28 H 1.09005 * 109.47258 * 60.00027 * 1 2 3 29 29 H 1.09003 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47374 * 300.00098 * 1 2 3 31 31 H 1.09004 * 109.46988 * 240.00033 * 2 1 3 32 32 H 1.09000 * 109.46622 * 120.00264 * 2 1 3 33 33 H 1.09006 * 109.48016 * 301.17461 * 6 5 3 34 34 H 1.09005 * 109.49250 * 181.14944 * 6 5 3 35 35 H 1.09000 * 109.52484 * 182.48833 * 7 6 5 36 36 H 1.09000 * 109.57159 * 62.33028 * 7 6 5 37 37 H 1.08993 * 109.54834 * 297.11183 * 8 7 6 38 38 H 1.09004 * 109.54080 * 176.84276 * 8 7 6 39 39 H 1.09000 * 109.32547 * 222.77551 * 14 13 11 40 40 H 1.09008 * 109.32442 * 342.23989 * 14 13 11 41 41 H 1.08992 * 109.00994 * 178.90519 * 15 14 13 42 42 H 1.09001 * 109.00415 * 297.76657 * 15 14 13 43 43 H 1.08993 * 109.48885 * 162.04361 * 16 15 14 44 44 H 1.08996 * 109.73243 * 41.46568 * 16 15 14 45 45 H 0.96997 * 120.00393 * 5.66356 * 21 20 18 46 46 H 1.08998 * 109.48181 * 80.87779 * 26 17 16 47 47 H 1.09002 * 109.48173 * 200.90743 * 26 17 16 48 48 H 1.08996 * 108.87459 * 149.86632 * 27 13 11 49 49 H 1.09002 * 108.79406 * 31.37124 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9820 0.8414 5 8 1.6632 2.0811 -1.2216 6 6 2.0700 3.4479 -1.3150 7 6 3.5969 3.5305 -1.2420 8 6 4.0733 2.8885 0.0646 9 6 3.5657 1.4446 0.1258 10 1 3.8543 0.9971 1.0769 11 6 4.1655 0.6514 -1.0066 12 8 3.4876 0.3615 -1.9695 13 7 5.4552 0.2643 -0.9492 14 6 6.3057 0.6885 0.1881 15 6 6.4688 -0.4171 1.1453 16 6 7.0881 -1.6542 0.4861 17 7 6.0625 -2.3293 -0.2559 18 6 5.2657 -3.2367 0.3899 19 1 4.9803 -3.0693 1.4180 20 6 4.8248 -4.3715 -0.2769 21 7 5.4997 -4.8325 -1.3085 22 14 3.2736 -5.2443 0.2900 23 1 2.7046 -4.5314 1.4618 24 1 3.6030 -6.6410 0.6719 25 1 2.2798 -5.2542 -0.8133 26 6 5.8326 -2.0707 -1.7037 27 6 6.0044 -0.5585 -1.9903 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6355 4.0136 -0.4908 34 1 1.7282 3.8651 -2.2623 35 1 3.9068 4.5752 -1.2687 36 1 4.0322 2.9997 -2.0886 37 1 3.6791 3.4498 0.9117 38 1 5.1628 2.8937 0.0973 39 1 7.2844 0.9892 -0.1858 40 1 5.8389 1.5353 0.6914 41 1 7.1123 -0.0884 1.9611 42 1 5.4922 -0.6839 1.5492 43 1 7.4831 -2.3170 1.2558 44 1 7.8901 -1.3501 -0.1865 45 1 6.3477 -4.4298 -1.5525 46 1 6.5541 -2.6366 -2.2930 47 1 4.8222 -2.3791 -1.9721 48 1 7.0668 -0.3371 -2.0912 49 1 5.5039 -0.3184 -2.9284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981303830.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:08 Heat of formation + Delta-G solvation = -61.690581 kcal Electronic energy + Delta-G solvation = -29203.849222 eV Core-core repulsion = 25552.431670 eV Total energy + Delta-G solvation = -3651.417552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.69239 -38.57241 -36.78432 -34.68270 -33.77650 -33.54207 -32.35760 -30.93726 -29.85579 -27.57589 -25.54406 -25.12847 -24.43125 -23.31078 -22.30258 -21.12516 -20.63391 -19.68257 -18.26076 -17.21967 -16.75680 -16.44580 -15.65342 -15.53100 -15.28897 -14.59807 -14.21357 -14.11787 -13.91002 -13.67510 -13.55664 -13.33618 -13.11218 -13.00240 -12.66813 -12.54343 -12.24027 -12.09776 -11.83538 -11.57868 -11.44936 -11.15298 -11.10846 -10.97313 -10.64932 -10.64461 -10.46064 -10.40609 -10.30896 -10.17255 -10.10782 -10.00034 -9.36786 -9.29161 -8.94721 -8.27559 -8.02121 -6.76833 -5.97906 -3.29099 3.15716 3.51261 3.52871 3.57664 3.68691 3.96785 4.56853 4.63382 4.67630 4.76626 4.90009 4.97728 5.10922 5.25117 5.29145 5.37536 5.39968 5.50731 5.54434 5.57454 5.59175 5.61934 5.68740 5.73191 5.78313 5.80669 5.90840 5.94239 6.06329 6.09662 6.16444 6.17014 6.28591 6.30382 6.33824 6.35411 6.53949 6.73815 6.76399 6.78099 6.93084 7.14352 7.28737 7.47182 7.93362 8.15841 8.64894 8.80195 9.23280 9.88589 10.33110 11.24205 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.006226 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.994049 B = 4496.333100 C = 5637.340921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.118 3.882 4 H 0.056 0.944 5 O -0.353 6.353 6 C 0.062 3.938 7 C -0.157 4.157 8 C -0.116 4.116 9 C -0.142 4.142 10 H 0.099 0.901 11 C 0.528 3.472 12 O -0.521 6.521 13 N -0.588 5.588 14 C 0.116 3.884 15 C -0.172 4.172 16 C 0.165 3.835 17 N -0.591 5.591 18 C -0.356 4.356 19 H 0.047 0.953 20 C -0.013 4.013 21 N -0.911 5.911 22 Si 1.062 2.938 23 H -0.292 1.292 24 H -0.294 1.294 25 H -0.289 1.289 26 C 0.142 3.858 27 C 0.099 3.901 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.029 0.971 45 H 0.269 0.731 46 H 0.031 0.969 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 17.728 4.086 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C 0.060 3.940 4 H 0.074 0.926 5 O -0.271 6.271 6 C -0.015 4.015 7 C -0.195 4.195 8 C -0.153 4.153 9 C -0.164 4.164 10 H 0.117 0.883 11 C 0.315 3.685 12 O -0.397 6.397 13 N -0.320 5.320 14 C -0.006 4.006 15 C -0.213 4.213 16 C 0.037 3.963 17 N -0.313 5.313 18 C -0.485 4.485 19 H 0.065 0.935 20 C -0.217 4.217 21 N -0.549 5.549 22 Si 0.892 3.108 23 H -0.218 1.218 24 H -0.221 1.221 25 H -0.215 1.215 26 C 0.016 3.984 27 C -0.026 4.026 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.061 0.939 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.047 0.953 45 H 0.080 0.920 46 H 0.049 0.951 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.206 16.216 3.044 16.808 hybrid contribution 1.447 1.371 0.845 2.165 sum -1.759 17.587 3.889 18.098 Atomic orbital electron populations 1.21658 0.95636 1.01398 1.01318 1.21716 0.96288 0.94009 1.04507 1.21840 0.90478 0.94864 0.86862 0.92575 1.88089 1.77547 1.23333 1.38170 1.22475 0.93360 0.84293 1.01402 1.22193 0.97732 1.01003 0.98528 1.21704 1.01420 0.93859 0.98346 1.22086 0.98129 0.96514 0.99634 0.88333 1.20022 0.81328 0.79552 0.87578 1.90680 1.59348 1.56024 1.33627 1.47334 1.10594 1.50277 1.23843 1.20885 0.94481 0.97218 0.88006 1.21810 1.02728 0.98540 0.98225 1.20147 0.90099 0.91738 0.94352 1.43623 1.35621 1.46384 1.05710 1.19796 1.28865 1.01043 0.98808 0.93533 1.25856 1.03757 0.94030 0.98023 1.70723 1.14712 1.39782 1.29709 0.83587 0.76237 0.75495 0.75454 1.21806 1.22112 1.21540 1.22027 1.00394 0.90321 0.85622 1.21692 0.97098 0.93215 0.90587 0.92198 0.92815 0.93687 0.88682 0.91006 0.93862 0.89290 0.91103 0.90814 0.91009 0.90621 0.91951 0.90710 0.92611 0.91450 0.93553 0.95299 0.92016 0.95131 0.91743 0.92602 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.81 37.16 0.36 -1.70 16 2 C -0.13 -2.15 5.21 -26.73 -0.14 -2.29 16 3 C 0.12 1.74 2.22 -26.69 -0.06 1.69 16 4 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 5 O -0.35 -5.59 8.68 -54.91 -0.48 -6.06 16 6 C 0.06 0.74 6.84 37.20 0.25 0.99 16 7 C -0.16 -1.79 5.87 -26.59 -0.16 -1.95 16 8 C -0.12 -1.29 5.12 -26.55 -0.14 -1.42 16 9 C -0.14 -2.05 1.74 -91.63 -0.16 -2.21 16 10 H 0.10 1.39 7.46 -51.93 -0.39 1.00 16 11 C 0.53 9.61 5.23 -10.98 -0.06 9.56 16 12 O -0.52 -11.36 12.87 -14.11 -0.18 -11.54 16 13 N -0.59 -10.32 2.46 -176.66 -0.43 -10.76 16 14 C 0.12 1.66 5.04 -5.91 -0.03 1.63 16 15 C -0.17 -2.80 5.63 -29.42 -0.17 -2.97 16 16 C 0.16 3.30 5.59 -5.52 -0.03 3.27 16 17 N -0.59 -14.28 2.27 -172.35 -0.39 -14.67 16 18 C -0.36 -9.79 9.02 -15.06 -0.14 -9.92 16 19 H 0.05 1.31 7.94 -52.49 -0.42 0.90 16 20 C -0.01 -0.37 4.71 -17.43 -0.08 -0.45 16 21 N -0.91 -27.52 12.92 55.49 0.72 -26.80 16 22 Si 1.06 26.08 29.98 -169.99 -5.10 20.98 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C 0.14 3.35 5.19 -1.75 -0.01 3.34 16 27 C 0.10 1.90 5.29 -4.58 -0.02 1.87 16 28 H 0.06 0.88 7.83 -51.93 -0.41 0.48 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 1.98 6.02 -51.93 -0.31 1.67 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.04 7.38 -51.93 -0.38 0.66 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.78 5.83 -51.93 -0.30 0.48 16 39 H 0.06 0.79 8.05 -51.93 -0.42 0.38 16 40 H 0.07 0.89 4.17 -51.92 -0.22 0.68 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.27 7.88 -51.93 -0.41 0.86 16 43 H 0.05 0.97 8.02 -51.93 -0.42 0.56 16 44 H 0.03 0.54 7.58 -51.93 -0.39 0.14 16 45 H 0.27 8.14 6.57 -40.82 -0.27 7.87 16 46 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 47 H 0.06 1.77 7.46 -51.93 -0.39 1.39 16 48 H 0.06 0.94 7.73 -51.93 -0.40 0.54 16 49 H 0.07 1.42 7.31 -51.93 -0.38 1.04 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -32.50 360.66 -9.46 -41.96 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.47 Total: 2.00 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -0.57 Total: -0.55 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.11 Total: -52.23 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.66 Total: -17.60 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.10 Total: 20.98 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.50 -9.46 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981303830.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.730 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds