Wall clock time and date at job start Tue Mar 31 2020 10:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47103 * 2 1 4 4 H 1.09003 * 109.49076 * 54.97186 * 3 2 1 5 5 O 1.42902 * 109.47947 * 294.94225 * 3 2 1 6 6 C 1.42905 * 114.09655 * 178.86133 * 5 3 2 7 7 C 1.53089 * 109.41780 * 61.15441 * 6 5 3 8 8 C 1.53177 * 109.16312 * 302.39215 * 7 6 5 9 9 C 1.53091 * 109.48199 * 174.99991 * 3 2 1 10 10 H 1.09003 * 109.57352 * 297.52761 * 9 3 2 11 11 C 1.50707 * 109.52213 * 57.68358 * 9 3 2 12 12 O 1.21275 * 119.99755 * 14.65393 * 11 9 3 13 13 N 1.34773 * 120.00000 * 194.64998 * 11 9 3 14 14 C 1.48215 * 119.97261 * 356.28915 * 13 11 9 15 15 C 1.47143 * 110.34730 * 102.50582 * 14 13 11 16 16 C 1.53243 * 111.81145 * 58.22366 * 15 14 13 17 17 N 1.43465 * 108.26472 * 281.68532 * 16 15 14 18 18 C 1.36943 * 118.93291 * 273.77568 * 17 16 15 19 19 H 1.07997 * 120.00284 * 35.34313 * 18 17 16 20 20 C 1.38813 * 119.99625 * 215.32876 * 18 17 16 21 21 N 1.31617 * 119.99830 * 23.87049 * 20 18 17 22 22 Si 1.86797 * 120.00067 * 203.86365 * 20 18 17 23 23 H 1.48499 * 109.46991 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47114 * 240.00447 * 22 20 18 25 25 H 1.48496 * 109.47314 * 120.00305 * 22 20 18 26 26 C 1.48852 * 122.12223 * 93.50155 * 17 16 15 27 27 C 1.43614 * 119.97325 * 176.30818 * 13 11 9 28 28 H 1.09005 * 109.47258 * 60.00027 * 1 2 3 29 29 H 1.09003 * 109.47541 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47374 * 300.00098 * 1 2 3 31 31 H 1.09004 * 109.46988 * 240.00033 * 2 1 3 32 32 H 1.09000 * 109.46622 * 120.00264 * 2 1 3 33 33 H 1.09006 * 109.48016 * 301.17461 * 6 5 3 34 34 H 1.09005 * 109.49250 * 181.14944 * 6 5 3 35 35 H 1.09000 * 109.52484 * 182.48833 * 7 6 5 36 36 H 1.09000 * 109.57159 * 62.33028 * 7 6 5 37 37 H 1.08993 * 109.54834 * 297.11183 * 8 7 6 38 38 H 1.09004 * 109.54080 * 176.84276 * 8 7 6 39 39 H 1.09000 * 109.32547 * 222.77551 * 14 13 11 40 40 H 1.09008 * 109.32442 * 342.23989 * 14 13 11 41 41 H 1.08992 * 109.00994 * 178.90519 * 15 14 13 42 42 H 1.09001 * 109.00415 * 297.76657 * 15 14 13 43 43 H 1.08993 * 109.48885 * 162.04361 * 16 15 14 44 44 H 1.08996 * 109.73243 * 41.46568 * 16 15 14 45 45 H 0.96997 * 120.00393 * 5.66356 * 21 20 18 46 46 H 1.08998 * 109.48181 * 80.87779 * 26 17 16 47 47 H 1.09002 * 109.48173 * 200.90743 * 26 17 16 48 48 H 1.08996 * 108.87459 * 149.86632 * 27 13 11 49 49 H 1.09002 * 108.79406 * 31.37124 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9820 0.8414 5 8 1.6632 2.0811 -1.2216 6 6 2.0700 3.4479 -1.3150 7 6 3.5969 3.5305 -1.2420 8 6 4.0733 2.8885 0.0646 9 6 3.5657 1.4446 0.1258 10 1 3.8543 0.9971 1.0769 11 6 4.1655 0.6514 -1.0066 12 8 3.4876 0.3615 -1.9695 13 7 5.4552 0.2643 -0.9492 14 6 6.3057 0.6885 0.1881 15 6 6.4688 -0.4171 1.1453 16 6 7.0881 -1.6542 0.4861 17 7 6.0625 -2.3293 -0.2559 18 6 5.2657 -3.2367 0.3899 19 1 4.9803 -3.0693 1.4180 20 6 4.8248 -4.3715 -0.2769 21 7 5.4997 -4.8325 -1.3085 22 14 3.2736 -5.2443 0.2900 23 1 2.7046 -4.5314 1.4618 24 1 3.6030 -6.6410 0.6719 25 1 2.2798 -5.2542 -0.8133 26 6 5.8326 -2.0707 -1.7037 27 6 6.0044 -0.5585 -1.9903 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6355 4.0136 -0.4908 34 1 1.7282 3.8651 -2.2623 35 1 3.9068 4.5752 -1.2687 36 1 4.0322 2.9997 -2.0886 37 1 3.6791 3.4498 0.9117 38 1 5.1628 2.8937 0.0973 39 1 7.2844 0.9892 -0.1858 40 1 5.8389 1.5353 0.6914 41 1 7.1123 -0.0884 1.9611 42 1 5.4922 -0.6839 1.5492 43 1 7.4831 -2.3170 1.2558 44 1 7.8901 -1.3501 -0.1865 45 1 6.3477 -4.4298 -1.5525 46 1 6.5541 -2.6366 -2.2930 47 1 4.8222 -2.3791 -1.9721 48 1 7.0668 -0.3371 -2.0912 49 1 5.5039 -0.3184 -2.9284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981303830.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:07 Heat of formation + Delta-G solvation = -81.109882 kcal Electronic energy + Delta-G solvation = -29204.691306 eV Core-core repulsion = 25552.431670 eV Total energy + Delta-G solvation = -3652.259636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.93937 -39.87878 -38.33490 -36.32867 -34.92903 -34.72303 -33.95638 -32.76945 -31.00816 -29.25175 -27.03271 -26.30605 -25.94186 -24.89202 -23.59593 -22.31018 -21.83383 -21.43736 -19.62052 -19.17560 -18.02301 -17.67630 -16.88116 -16.84238 -16.58835 -16.12883 -15.83013 -15.51700 -15.45373 -15.13346 -14.95982 -14.57516 -14.41640 -14.28013 -14.15793 -14.03387 -13.60635 -13.34835 -13.30112 -12.94518 -12.69062 -12.62233 -12.55926 -12.32152 -12.14080 -12.05724 -12.04252 -11.93769 -11.87069 -11.68289 -11.50276 -11.27989 -11.19581 -10.51523 -10.43731 -10.19681 -9.50504 -8.85697 -8.16112 -5.49174 1.48434 1.57599 1.71044 1.79313 2.21148 2.60158 2.93921 3.19370 3.45194 3.58225 3.67484 3.76283 3.90970 3.97103 4.07052 4.16090 4.18847 4.24935 4.26789 4.38936 4.41996 4.45264 4.50348 4.61824 4.66600 4.67613 4.73177 4.76045 4.85540 4.85989 4.87666 4.89249 5.00822 5.03538 5.09287 5.12233 5.14998 5.21625 5.26830 5.33977 5.43560 5.49214 5.81402 5.91829 6.41709 6.47775 6.58490 7.16690 7.42534 7.78809 8.24963 8.98943 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.006226 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.994049 B = 4496.333100 C = 5637.340921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.130 4.130 3 C 0.119 3.881 4 H 0.090 0.910 5 O -0.386 6.386 6 C 0.053 3.947 7 C -0.154 4.154 8 C -0.110 4.110 9 C -0.138 4.138 10 H 0.106 0.894 11 C 0.519 3.481 12 O -0.568 6.568 13 N -0.594 5.594 14 C 0.112 3.888 15 C -0.156 4.156 16 C 0.155 3.845 17 N -0.603 5.603 18 C -0.347 4.347 19 H 0.040 0.960 20 C -0.068 4.068 21 N -0.942 5.942 22 Si 1.102 2.898 23 H -0.271 1.271 24 H -0.285 1.285 25 H -0.298 1.298 26 C 0.155 3.845 27 C 0.114 3.886 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.037 0.963 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.039 0.961 43 H 0.032 0.968 44 H 0.048 0.952 45 H 0.255 0.745 46 H 0.013 0.987 47 H 0.009 0.991 48 H 0.088 0.912 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.245 21.413 6.766 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.061 3.939 4 H 0.108 0.892 5 O -0.305 6.305 6 C -0.023 4.023 7 C -0.191 4.191 8 C -0.147 4.147 9 C -0.160 4.160 10 H 0.124 0.876 11 C 0.308 3.692 12 O -0.447 6.447 13 N -0.325 5.325 14 C -0.009 4.009 15 C -0.197 4.197 16 C 0.029 3.971 17 N -0.326 5.326 18 C -0.478 4.478 19 H 0.058 0.942 20 C -0.266 4.266 21 N -0.583 5.583 22 Si 0.928 3.072 23 H -0.196 1.196 24 H -0.211 1.211 25 H -0.225 1.225 26 C 0.028 3.972 27 C -0.013 4.013 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.056 0.944 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.031 0.969 47 H 0.028 0.972 48 H 0.106 0.894 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.703 19.948 5.776 20.943 hybrid contribution 1.339 0.250 -0.001 1.362 sum -1.363 20.198 5.775 21.052 Atomic orbital electron populations 1.21602 0.93983 1.01424 1.02316 1.21658 0.97874 0.95607 1.01628 1.21856 0.90827 0.93539 0.87714 0.89228 1.88053 1.78064 1.25527 1.38860 1.22735 0.94067 0.82705 1.02834 1.22168 0.97055 1.02443 0.97448 1.21773 1.02286 0.91302 0.99325 1.22145 0.97814 0.98335 0.97700 0.87647 1.20864 0.81142 0.79185 0.88015 1.90665 1.60470 1.57716 1.35800 1.47545 1.11099 1.49506 1.24362 1.21193 0.95739 0.97295 0.86639 1.21587 1.01519 0.97142 0.99444 1.20399 0.89838 0.92808 0.94087 1.43776 1.36627 1.46436 1.05797 1.19963 1.28300 1.00950 0.98540 0.94199 1.27004 1.05934 0.95386 0.98243 1.70832 1.14900 1.41058 1.31512 0.83053 0.73348 0.75362 0.75482 1.19609 1.21121 1.22509 1.21738 0.96584 0.93508 0.85325 1.21362 0.98887 0.90119 0.90885 0.92928 0.93361 0.90773 0.93813 0.91551 0.90921 0.89060 0.87871 0.94375 0.87505 0.89249 0.89034 0.87270 0.88517 0.94253 0.94940 0.93390 0.93466 0.96904 0.97194 0.89418 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.81 71.98 0.71 -3.18 16 2 C -0.13 -4.44 5.21 30.59 0.16 -4.28 16 3 C 0.12 3.30 2.22 30.62 0.07 3.37 16 4 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 5 O -0.39 -11.85 8.68 -130.17 -1.13 -12.98 16 6 C 0.05 1.12 6.84 72.01 0.49 1.61 16 7 C -0.15 -2.99 5.87 30.68 0.18 -2.81 16 8 C -0.11 -1.91 5.12 30.71 0.16 -1.75 16 9 C -0.14 -3.66 1.74 -11.45 -0.02 -3.68 16 10 H 0.11 2.64 7.46 -2.39 -0.02 2.62 16 11 C 0.52 18.78 5.23 87.66 0.46 19.24 16 12 O -0.57 -25.98 12.87 15.80 0.20 -25.78 16 13 N -0.59 -20.14 2.46 -831.21 -2.04 -22.18 16 14 C 0.11 2.74 5.04 84.23 0.42 3.17 16 15 C -0.16 -4.59 5.63 28.85 0.16 -4.43 16 16 C 0.16 6.00 5.59 87.02 0.49 6.49 16 17 N -0.60 -29.77 2.27 -699.20 -1.59 -31.36 16 18 C -0.35 -19.65 9.02 84.03 0.76 -18.89 16 19 H 0.04 2.29 7.94 -2.91 -0.02 2.27 16 20 C -0.07 -4.03 4.71 84.86 0.40 -3.63 16 21 N -0.94 -59.74 12.92 21.65 0.28 -59.46 16 22 Si 1.10 54.40 29.98 68.60 2.06 56.45 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.30 -15.03 7.11 99.48 0.71 -14.33 16 26 C 0.15 7.68 5.19 86.56 0.45 8.13 16 27 C 0.11 4.38 5.29 87.55 0.46 4.84 16 28 H 0.05 1.56 7.83 -2.38 -0.02 1.54 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.94 6.02 -2.38 -0.01 1.93 16 32 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.04 1.02 7.38 -2.39 -0.02 1.00 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.09 1.33 5.83 -2.39 -0.01 1.32 16 39 H 0.09 1.81 8.05 -2.39 -0.02 1.79 16 40 H 0.11 1.99 4.17 -2.38 -0.01 1.98 16 41 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.04 1.39 7.88 -2.39 -0.02 1.38 16 43 H 0.03 1.33 8.02 -2.39 -0.02 1.31 16 44 H 0.05 1.67 7.58 -2.39 -0.02 1.66 16 45 H 0.26 16.35 6.57 -92.71 -0.61 15.74 16 46 H 0.01 0.68 7.13 -2.39 -0.02 0.66 16 47 H 0.01 0.56 7.46 -2.39 -0.02 0.55 16 48 H 0.09 2.81 7.73 -2.39 -0.02 2.79 16 49 H 0.06 2.44 7.31 -2.39 -0.02 2.42 16 Total: -1.00 -78.45 360.66 4.20 -74.25 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 1.08 Total: 16.85 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.35 Total: 4.20 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -3.35 Total: -113.00 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.93 Total: -38.76 kcal Atomic # 14 Polarization: 54.40 SS G_CDS: 2.06 Total: 56.45 kcal Total: -78.45 4.20 -74.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981303830.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.855 kcal (2) G-P(sol) polarization free energy of solvation -78.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds