Wall clock time and date at job start Tue Mar 31 2020 10:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47336 * 2 1 4 4 H 1.09002 * 110.53908 * 52.95310 * 3 2 1 5 5 C 1.55137 * 110.52280 * 290.17125 * 3 2 1 6 6 C 1.55001 * 102.09030 * 220.39671 * 5 3 2 7 7 O 1.44380 * 103.49149 * 37.10580 * 6 5 3 8 8 C 1.43746 * 106.97497 * 319.93832 * 7 6 5 9 9 H 1.08997 * 109.87887 * 266.93938 * 8 7 6 10 10 C 1.50702 * 109.87641 * 145.93857 * 8 7 6 11 11 O 1.21287 * 119.99739 * 345.72431 * 10 8 7 12 12 N 1.34776 * 119.99745 * 165.72904 * 10 8 7 13 13 C 1.48141 * 127.83964 * 354.87084 * 12 10 8 14 14 C 1.54388 * 104.61894 * 219.56337 * 13 12 10 15 15 H 1.08998 * 110.43020 * 217.21585 * 14 13 12 16 16 N 1.46508 * 110.34061 * 95.00215 * 14 13 12 17 17 C 1.36933 * 119.99535 * 89.19033 * 16 14 13 18 18 H 1.08006 * 120.00331 * 0.27082 * 17 16 14 19 19 C 1.38819 * 119.99926 * 180.27817 * 17 16 14 20 20 N 1.31617 * 119.99485 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47456 * 89.99543 * 21 19 17 23 23 H 1.48498 * 109.47088 * 209.99908 * 21 19 17 24 24 H 1.48503 * 109.46910 * 329.99222 * 21 19 17 25 25 C 1.54284 * 104.95885 * 336.13734 * 14 13 12 26 26 C 1.52993 * 110.34557 * 118.86802 * 25 14 13 27 27 C 1.53005 * 110.34061 * 241.02195 * 25 14 13 28 28 C 1.48148 * 127.83568 * 174.84619 * 12 10 8 29 29 H 1.09009 * 109.47587 * 60.00126 * 1 2 3 30 30 H 1.09004 * 109.47663 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47470 * 300.00027 * 1 2 3 32 32 H 1.08997 * 109.47237 * 239.99817 * 2 1 3 33 33 H 1.08998 * 109.47225 * 120.00216 * 2 1 3 34 34 H 1.08994 * 110.83616 * 102.23354 * 5 3 2 35 35 H 1.08996 * 110.97932 * 338.61989 * 5 3 2 36 36 H 1.08994 * 110.61840 * 278.60342 * 6 5 3 37 37 H 1.08998 * 110.74878 * 155.67293 * 6 5 3 38 38 H 1.08998 * 110.40700 * 100.78025 * 13 12 10 39 39 H 1.08997 * 110.40958 * 338.35298 * 13 12 10 40 40 H 0.96993 * 120.00135 * 269.46911 * 16 14 13 41 41 H 0.97004 * 119.99589 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.47272 * 59.99597 * 26 25 14 43 43 H 1.08996 * 109.47285 * 179.97438 * 26 25 14 44 44 H 1.09003 * 109.47505 * 299.99829 * 26 25 14 45 45 H 1.08995 * 109.47166 * 59.99526 * 27 25 14 46 46 H 1.09003 * 109.47099 * 180.02562 * 27 25 14 47 47 H 1.09002 * 109.46737 * 299.99826 * 27 25 14 48 48 H 1.09004 * 110.40646 * 21.64850 * 28 12 10 49 49 H 1.08997 * 110.50403 * 259.27144 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5877 2.0080 0.8147 5 6 1.7489 2.1222 -1.3638 6 6 3.0492 2.9298 -1.6081 7 8 4.0847 2.0641 -1.0954 8 6 3.5766 1.4712 0.1116 9 1 3.8746 2.0697 0.9724 10 6 4.1064 0.0677 0.2554 11 8 4.6269 -0.4839 -0.6911 12 7 4.0015 -0.5744 1.4357 13 6 3.4985 -0.0368 2.7212 14 6 4.4376 -0.6380 3.7891 15 1 3.8786 -0.8854 4.6915 16 7 5.5192 0.2994 4.1019 17 6 5.3535 1.2298 5.0928 18 1 4.4271 1.2698 5.6466 19 6 6.3762 2.1218 5.3854 20 7 7.5052 2.0728 4.7107 21 14 6.1504 3.3907 6.7376 22 1 6.6110 2.8237 8.0304 23 1 6.9464 4.6027 6.4170 24 1 4.7143 3.7546 6.8401 25 6 5.0074 -1.9180 3.1431 26 6 6.5297 -1.8217 3.0246 27 6 4.6156 -3.1480 3.9646 28 6 4.3626 -1.9783 1.7417 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 0.8872 2.7855 -1.2903 35 1 1.6002 1.3786 -2.1466 36 1 3.0267 3.8696 -1.0565 37 1 3.1951 3.1142 -2.6724 38 1 2.4718 -0.3601 2.8927 39 1 3.5616 1.0513 2.7288 40 1 6.3511 0.2635 3.6045 41 1 8.2199 2.6958 4.9153 42 1 6.9645 -1.7003 4.0167 43 1 6.9169 -2.7323 2.5675 44 1 6.7924 -0.9640 2.4054 45 1 3.5292 -3.2249 4.0080 46 1 5.0253 -4.0431 3.4965 47 1 5.0137 -3.0521 4.9748 48 1 5.0777 -2.3549 1.0102 49 1 3.4720 -2.6064 1.7596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995910442.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:26 Heat of formation + Delta-G solvation = -62.176657 kcal Electronic energy + Delta-G solvation = -28308.849078 eV Core-core repulsion = 24657.410448 eV Total energy + Delta-G solvation = -3651.438630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.63965 -39.11678 -37.32584 -34.88189 -33.88742 -33.11202 -30.77957 -30.39013 -29.52159 -27.80248 -26.71745 -26.02820 -23.91288 -23.59430 -22.72264 -21.71252 -20.77129 -18.86686 -18.37535 -17.21922 -16.90399 -16.39869 -16.01988 -15.73068 -14.95126 -14.55089 -14.52073 -14.20925 -13.95720 -13.79732 -13.59713 -13.44133 -13.20825 -12.62769 -12.50615 -12.42143 -12.13382 -12.00542 -11.83333 -11.63098 -11.52463 -11.32624 -11.18730 -11.10391 -11.01385 -10.91703 -10.73512 -10.61696 -10.52982 -10.44482 -10.23946 -9.98651 -9.85920 -9.60920 -9.15859 -9.01881 -8.29938 -7.00680 -5.82554 -3.12314 2.88242 3.14668 3.38769 3.43812 3.46350 4.06766 4.33306 4.52729 4.55851 4.66011 4.87732 5.04961 5.10324 5.12087 5.15642 5.20679 5.28788 5.36845 5.40849 5.50793 5.59230 5.60380 5.65374 5.70786 5.72309 5.77840 5.80995 5.87830 5.92754 5.94077 5.95477 5.99708 6.10428 6.21443 6.25197 6.28601 6.32003 6.34352 6.43217 6.55892 6.66383 6.81326 6.90309 6.99200 7.63685 7.92586 8.35631 8.52929 9.47390 10.04590 10.39018 11.39459 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.005226 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.745833 B = 5356.061421 C = 6446.844529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.147 4.147 6 C 0.044 3.956 7 O -0.348 6.348 8 C 0.065 3.935 9 H 0.096 0.904 10 C 0.546 3.454 11 O -0.538 6.538 12 N -0.611 5.611 13 C 0.070 3.930 14 C 0.174 3.826 15 H 0.069 0.931 16 N -0.716 5.716 17 C -0.248 4.248 18 H 0.071 0.929 19 C -0.008 4.008 20 N -0.928 5.928 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.088 4.088 26 C -0.128 4.128 27 C -0.131 4.131 28 C 0.116 3.884 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.391 0.609 41 H 0.256 0.744 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.061 0.939 48 H 0.077 0.923 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.949 -4.910 -7.779 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.170 4.170 3 C -0.126 4.126 4 H 0.111 0.889 5 C -0.185 4.185 6 C -0.033 4.033 7 O -0.266 6.266 8 C 0.004 3.996 9 H 0.114 0.886 10 C 0.334 3.666 11 O -0.414 6.414 12 N -0.346 5.346 13 C -0.056 4.056 14 C 0.061 3.939 15 H 0.086 0.914 16 N -0.359 5.359 17 C -0.379 4.379 18 H 0.089 0.911 19 C -0.205 4.205 20 N -0.575 5.575 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.090 4.090 26 C -0.186 4.186 27 C -0.188 4.188 28 C -0.007 4.007 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.102 0.898 40 H 0.228 0.772 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.095 0.905 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.455 -5.039 -8.350 16.618 hybrid contribution -0.001 0.977 0.755 1.234 sum -13.456 -4.062 -7.595 15.976 Atomic orbital electron populations 1.21736 0.95373 1.01580 1.01676 1.21886 0.96307 0.95132 1.03682 1.22560 0.93216 0.98052 0.98740 0.88923 1.23283 0.98516 0.99724 0.96968 1.23596 0.86322 0.93365 1.00016 1.88997 1.37725 1.60674 1.39196 1.22696 0.93557 0.92935 0.90384 0.88601 1.19734 0.78492 0.87013 0.81317 1.90670 1.44061 1.68087 1.38621 1.48821 1.63534 1.13128 1.09118 1.23626 0.97492 1.00805 0.83672 1.21184 0.90067 0.88443 0.94172 0.91356 1.42760 1.14678 1.36732 1.41699 1.19243 0.99705 1.08672 1.10269 0.91131 1.24749 0.96270 0.99808 0.99684 1.69666 1.05268 1.39681 1.42905 0.86232 0.77194 0.81191 0.81770 1.21699 1.21819 1.20768 1.21777 0.96859 0.96379 0.93937 1.21666 0.93514 1.00518 1.02875 1.21782 1.00657 0.96278 1.00130 1.22396 0.99149 0.82691 0.96418 0.92865 0.92756 0.92623 0.91495 0.90055 0.90052 0.90240 0.91915 0.88799 0.92287 0.89753 0.77189 0.93381 0.91142 0.93875 0.92254 0.92827 0.92985 0.91957 0.90465 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.79 37.15 0.36 -0.99 16 2 C -0.13 -1.58 4.16 -26.74 -0.11 -1.69 16 3 C -0.11 -1.30 3.06 -88.92 -0.27 -1.57 16 4 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 5 C -0.15 -1.54 6.02 -24.54 -0.15 -1.69 16 6 C 0.04 0.53 7.72 38.21 0.29 0.82 16 7 O -0.35 -6.07 10.77 -54.38 -0.59 -6.66 16 8 C 0.07 1.07 3.24 -27.31 -0.09 0.98 16 9 H 0.10 1.63 7.11 -51.93 -0.37 1.26 16 10 C 0.55 10.10 5.29 -10.98 -0.06 10.04 16 11 O -0.54 -11.77 16.84 -13.60 -0.23 -12.00 16 12 N -0.61 -10.12 2.17 -169.31 -0.37 -10.48 16 13 C 0.07 1.12 5.87 -2.41 -0.01 1.11 16 14 C 0.17 3.12 3.35 -66.53 -0.22 2.90 16 15 H 0.07 1.20 7.66 -51.93 -0.40 0.80 16 16 N -0.72 -16.63 4.57 -52.06 -0.24 -16.87 16 17 C -0.25 -6.41 9.96 -15.06 -0.15 -6.56 16 18 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 21 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.09 -1.37 1.03 -153.11 -0.16 -1.52 16 26 C -0.13 -2.26 7.09 37.15 0.26 -2.00 16 27 C -0.13 -1.66 8.26 37.16 0.31 -1.35 16 28 C 0.12 1.76 6.16 -2.41 -0.01 1.74 16 29 H 0.05 0.45 7.61 -51.92 -0.40 0.05 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.92 7.69 -51.93 -0.40 0.52 16 33 H 0.08 1.04 4.74 -51.93 -0.25 0.79 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.85 7.79 -51.93 -0.40 0.44 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 0.78 7.52 -51.93 -0.39 0.39 16 39 H 0.08 1.50 6.78 -51.93 -0.35 1.15 16 40 H 0.39 9.95 5.11 -40.82 -0.21 9.74 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.07 1.36 7.76 -51.93 -0.40 0.96 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.21 6.98 -51.93 -0.36 0.85 16 45 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.08 1.26 7.57 -51.93 -0.39 0.87 16 49 H 0.07 0.84 7.83 -51.93 -0.41 0.43 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -31.78 374.45 -8.68 -40.46 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -8.50 Total: 10.02 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -0.10 Total: -0.10 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.12 Total: -53.91 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.81 Total: -18.66 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.78 -8.68 -40.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995910442.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.715 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds