Wall clock time and date at job start Tue Mar 31 2020 10:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47336 * 2 1 4 4 H 1.09002 * 110.53908 * 52.95310 * 3 2 1 5 5 C 1.55137 * 110.52280 * 290.17125 * 3 2 1 6 6 C 1.55001 * 102.09030 * 220.39671 * 5 3 2 7 7 O 1.44380 * 103.49149 * 37.10580 * 6 5 3 8 8 C 1.43746 * 106.97497 * 319.93832 * 7 6 5 9 9 H 1.08997 * 109.87887 * 266.93938 * 8 7 6 10 10 C 1.50702 * 109.87641 * 145.93857 * 8 7 6 11 11 O 1.21287 * 119.99739 * 345.72431 * 10 8 7 12 12 N 1.34776 * 119.99745 * 165.72904 * 10 8 7 13 13 C 1.48141 * 127.83964 * 354.87084 * 12 10 8 14 14 C 1.54388 * 104.61894 * 219.56337 * 13 12 10 15 15 H 1.08998 * 110.43020 * 217.21585 * 14 13 12 16 16 N 1.46508 * 110.34061 * 95.00215 * 14 13 12 17 17 C 1.36933 * 119.99535 * 89.19033 * 16 14 13 18 18 H 1.08006 * 120.00331 * 0.27082 * 17 16 14 19 19 C 1.38819 * 119.99926 * 180.27817 * 17 16 14 20 20 N 1.31617 * 119.99485 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47456 * 89.99543 * 21 19 17 23 23 H 1.48498 * 109.47088 * 209.99908 * 21 19 17 24 24 H 1.48503 * 109.46910 * 329.99222 * 21 19 17 25 25 C 1.54284 * 104.95885 * 336.13734 * 14 13 12 26 26 C 1.52993 * 110.34557 * 118.86802 * 25 14 13 27 27 C 1.53005 * 110.34061 * 241.02195 * 25 14 13 28 28 C 1.48148 * 127.83568 * 174.84619 * 12 10 8 29 29 H 1.09009 * 109.47587 * 60.00126 * 1 2 3 30 30 H 1.09004 * 109.47663 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47470 * 300.00027 * 1 2 3 32 32 H 1.08997 * 109.47237 * 239.99817 * 2 1 3 33 33 H 1.08998 * 109.47225 * 120.00216 * 2 1 3 34 34 H 1.08994 * 110.83616 * 102.23354 * 5 3 2 35 35 H 1.08996 * 110.97932 * 338.61989 * 5 3 2 36 36 H 1.08994 * 110.61840 * 278.60342 * 6 5 3 37 37 H 1.08998 * 110.74878 * 155.67293 * 6 5 3 38 38 H 1.08998 * 110.40700 * 100.78025 * 13 12 10 39 39 H 1.08997 * 110.40958 * 338.35298 * 13 12 10 40 40 H 0.96993 * 120.00135 * 269.46911 * 16 14 13 41 41 H 0.97004 * 119.99589 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.47272 * 59.99597 * 26 25 14 43 43 H 1.08996 * 109.47285 * 179.97438 * 26 25 14 44 44 H 1.09003 * 109.47505 * 299.99829 * 26 25 14 45 45 H 1.08995 * 109.47166 * 59.99526 * 27 25 14 46 46 H 1.09003 * 109.47099 * 180.02562 * 27 25 14 47 47 H 1.09002 * 109.46737 * 299.99826 * 27 25 14 48 48 H 1.09004 * 110.40646 * 21.64850 * 28 12 10 49 49 H 1.08997 * 110.50403 * 259.27144 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5877 2.0080 0.8147 5 6 1.7489 2.1222 -1.3638 6 6 3.0492 2.9298 -1.6081 7 8 4.0847 2.0641 -1.0954 8 6 3.5766 1.4712 0.1116 9 1 3.8746 2.0697 0.9724 10 6 4.1064 0.0677 0.2554 11 8 4.6269 -0.4839 -0.6911 12 7 4.0015 -0.5744 1.4357 13 6 3.4985 -0.0368 2.7212 14 6 4.4376 -0.6380 3.7891 15 1 3.8786 -0.8854 4.6915 16 7 5.5192 0.2994 4.1019 17 6 5.3535 1.2298 5.0928 18 1 4.4271 1.2698 5.6466 19 6 6.3762 2.1218 5.3854 20 7 7.5052 2.0728 4.7107 21 14 6.1504 3.3907 6.7376 22 1 6.6110 2.8237 8.0304 23 1 6.9464 4.6027 6.4170 24 1 4.7143 3.7546 6.8401 25 6 5.0074 -1.9180 3.1431 26 6 6.5297 -1.8217 3.0246 27 6 4.6156 -3.1480 3.9646 28 6 4.3626 -1.9783 1.7417 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 0.8872 2.7855 -1.2903 35 1 1.6002 1.3786 -2.1466 36 1 3.0267 3.8696 -1.0565 37 1 3.1951 3.1142 -2.6724 38 1 2.4718 -0.3601 2.8927 39 1 3.5616 1.0513 2.7288 40 1 6.3511 0.2635 3.6045 41 1 8.2199 2.6958 4.9153 42 1 6.9645 -1.7003 4.0167 43 1 6.9169 -2.7323 2.5675 44 1 6.7924 -0.9640 2.4054 45 1 3.5292 -3.2249 4.0080 46 1 5.0253 -4.0431 3.4965 47 1 5.0137 -3.0521 4.9748 48 1 5.0777 -2.3549 1.0102 49 1 3.4720 -2.6064 1.7596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995910442.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:25 Heat of formation + Delta-G solvation = -81.222327 kcal Electronic energy + Delta-G solvation = -28309.674960 eV Core-core repulsion = 24657.410448 eV Total energy + Delta-G solvation = -3652.264512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.90640 -40.38100 -38.75448 -36.02592 -35.57564 -34.48517 -32.60922 -31.33164 -30.62446 -29.30851 -28.12038 -27.22254 -25.68608 -24.65270 -23.70388 -23.15224 -21.84438 -20.25144 -19.70164 -19.04977 -18.20486 -17.56267 -17.36065 -17.00911 -16.51041 -15.96732 -15.59113 -15.50690 -15.38712 -15.30325 -14.98708 -14.52031 -14.35983 -13.92604 -13.84079 -13.54424 -13.35351 -13.26458 -13.05943 -12.94231 -12.80849 -12.69222 -12.58411 -12.48456 -12.22978 -12.10802 -12.08993 -12.07013 -11.86440 -11.64620 -11.52433 -11.40162 -11.33928 -11.09211 -10.93505 -10.49050 -9.73244 -8.90942 -7.90174 -5.18176 1.48822 1.49650 1.50866 1.58605 1.85664 2.58901 2.96666 3.29857 3.40170 3.44098 3.64929 3.71733 3.82233 3.86792 3.97689 4.17111 4.20614 4.25289 4.35218 4.38837 4.42826 4.47454 4.52192 4.64639 4.68607 4.70142 4.77114 4.79848 4.84654 4.85718 4.91541 4.95602 5.01510 5.02996 5.11973 5.16106 5.17954 5.24954 5.31026 5.35146 5.41919 5.43179 5.55196 5.62239 5.80049 6.30919 6.54252 7.11986 7.38132 8.15423 8.37159 9.33599 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.005226 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.745833 B = 5356.061421 C = 6446.844529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C -0.101 4.101 4 H 0.113 0.887 5 C -0.137 4.137 6 C 0.033 3.967 7 O -0.390 6.390 8 C 0.062 3.938 9 H 0.080 0.920 10 C 0.539 3.461 11 O -0.583 6.583 12 N -0.609 5.609 13 C 0.080 3.920 14 C 0.163 3.837 15 H 0.083 0.917 16 N -0.731 5.731 17 C -0.232 4.232 18 H 0.086 0.914 19 C -0.077 4.077 20 N -0.973 5.973 21 Si 0.967 3.033 22 H -0.290 1.290 23 H -0.305 1.305 24 H -0.263 1.263 25 C -0.080 4.080 26 C -0.120 4.120 27 C -0.124 4.124 28 C 0.116 3.884 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.375 0.625 41 H 0.247 0.753 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.019 0.981 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.777 -5.600 -7.143 19.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C -0.120 4.120 4 H 0.131 0.869 5 C -0.174 4.174 6 C -0.043 4.043 7 O -0.309 6.309 8 C 0.001 3.999 9 H 0.097 0.903 10 C 0.329 3.671 11 O -0.463 6.463 12 N -0.342 5.342 13 C -0.045 4.045 14 C 0.052 3.948 15 H 0.101 0.899 16 N -0.372 5.372 17 C -0.363 4.363 18 H 0.104 0.896 19 C -0.269 4.269 20 N -0.625 5.625 21 Si 0.797 3.203 22 H -0.218 1.218 23 H -0.233 1.233 24 H -0.188 1.188 25 C -0.082 4.082 26 C -0.177 4.177 27 C -0.181 4.181 28 C -0.006 4.006 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.210 0.790 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.039 0.961 45 H 0.099 0.901 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.365 -5.761 -7.684 19.844 hybrid contribution 1.195 1.124 0.515 1.720 sum -16.170 -4.636 -7.169 18.286 Atomic orbital electron populations 1.21693 0.92847 1.02370 1.02766 1.21810 0.98335 0.94331 1.02027 1.22637 0.89905 0.98943 1.00505 0.86929 1.23274 0.98701 0.99739 0.95676 1.23924 0.86097 0.93362 1.00911 1.88953 1.40470 1.61775 1.39689 1.22760 0.96468 0.91015 0.89624 0.90254 1.20228 0.77870 0.87809 0.81224 1.90631 1.46198 1.69281 1.40194 1.48873 1.62796 1.13734 1.08807 1.23503 0.98955 0.99618 0.82375 1.21532 0.89247 0.88495 0.95477 0.89894 1.42982 1.15622 1.37397 1.41170 1.19707 0.99429 1.07722 1.09488 0.89647 1.25516 0.96424 1.02539 1.02437 1.69849 1.06306 1.40962 1.45342 0.85220 0.77682 0.78350 0.78999 1.21781 1.23279 1.18787 1.21745 0.94934 0.96855 0.94665 1.21558 0.95649 0.99781 1.00756 1.21742 1.02484 0.94978 0.98925 1.22547 1.00311 0.82404 0.95336 0.91874 0.92188 0.91398 0.93983 0.90898 0.86600 0.90558 0.90654 0.87421 0.88010 0.91649 0.78979 0.94451 0.93398 0.91735 0.96141 0.90115 0.91266 0.92840 0.92078 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.79 71.98 0.70 -1.37 16 2 C -0.13 -2.76 4.16 30.59 0.13 -2.63 16 3 C -0.10 -2.27 3.06 -9.69 -0.03 -2.30 16 4 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 5 C -0.14 -2.54 6.02 32.01 0.19 -2.34 16 6 C 0.03 0.76 7.72 72.67 0.56 1.32 16 7 O -0.39 -13.99 10.77 -130.67 -1.41 -15.40 16 8 C 0.06 2.06 3.24 30.22 0.10 2.15 16 9 H 0.08 2.81 7.11 -2.39 -0.02 2.79 16 10 C 0.54 20.37 5.29 87.66 0.46 20.83 16 11 O -0.58 -26.57 16.84 15.26 0.26 -26.31 16 12 N -0.61 -19.80 2.17 -807.97 -1.75 -21.55 16 13 C 0.08 2.42 5.87 86.54 0.51 2.93 16 14 C 0.16 5.59 3.35 45.90 0.15 5.75 16 15 H 0.08 2.65 7.66 -2.39 -0.02 2.63 16 16 N -0.73 -34.33 4.57 -318.63 -1.46 -35.78 16 17 C -0.23 -11.94 9.96 84.04 0.84 -11.10 16 18 H 0.09 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 20 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 21 Si 0.97 44.87 29.55 68.60 2.03 46.90 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 23 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 24 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 25 C -0.08 -2.39 1.03 -51.28 -0.05 -2.44 16 26 C -0.12 -4.33 7.09 71.98 0.51 -3.82 16 27 C -0.12 -2.73 8.26 71.98 0.59 -2.13 16 28 C 0.12 3.33 6.16 86.53 0.53 3.86 16 29 H 0.06 0.82 7.61 -2.38 -0.02 0.81 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.04 1.12 7.69 -2.39 -0.02 1.10 16 33 H 0.07 1.67 4.74 -2.39 -0.01 1.66 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.48 7.79 -2.39 -0.02 1.46 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.10 2.27 7.52 -2.39 -0.02 2.25 16 39 H 0.06 2.26 6.78 -2.39 -0.02 2.25 16 40 H 0.38 19.97 5.11 -92.71 -0.47 19.50 16 41 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.05 1.92 7.76 -2.38 -0.02 1.90 16 43 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.02 0.87 6.98 -2.39 -0.02 0.85 16 45 H 0.08 1.38 8.10 -2.39 -0.02 1.36 16 46 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.06 1.98 7.57 -2.39 -0.02 1.96 16 49 H 0.10 2.24 7.83 -2.39 -0.02 2.22 16 Total: -1.00 -73.69 374.45 4.07 -69.62 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.45 Total: 36.96 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 5.67 Total: 4.89 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -2.93 Total: -116.66 kcal Atomic # 8 Polarization: -40.56 SS G_CDS: -1.15 Total: -41.71 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -73.69 4.07 -69.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995910442.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.600 kcal (2) G-P(sol) polarization free energy of solvation -73.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds