Wall clock time and date at job start Tue Mar 31 2020 10:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 H 1.09001 * 110.43834 * 58.12846 * 3 2 1 5 5 C 1.54815 * 110.48527 * 295.58315 * 3 2 1 6 6 C 1.54994 * 102.09193 * 220.30794 * 5 3 2 7 7 O 1.44385 * 103.48994 * 37.02351 * 6 5 3 8 8 C 1.43743 * 106.97535 * 319.94246 * 7 6 5 9 9 H 1.09000 * 109.87427 * 267.08673 * 8 7 6 10 10 C 1.50693 * 109.87945 * 145.93560 * 8 7 6 11 11 O 1.21283 * 120.00239 * 341.12778 * 10 8 7 12 12 N 1.34786 * 119.99935 * 161.12933 * 10 8 7 13 13 C 1.47015 * 125.64636 * 4.67361 * 12 10 8 14 14 C 1.54328 * 107.27020 * 181.02049 * 13 12 10 15 15 H 1.08999 * 110.71842 * 140.54993 * 14 13 12 16 16 N 1.46501 * 110.71844 * 263.82517 * 14 13 12 17 17 C 1.36933 * 119.99816 * 273.54128 * 16 14 13 18 18 H 1.07992 * 120.00363 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99849 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00193 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99905 * 0.02562 * 19 17 16 22 22 H 1.48488 * 109.47142 * 89.99693 * 21 19 17 23 23 H 1.48506 * 109.47012 * 209.99996 * 21 19 17 24 24 H 1.48507 * 109.46876 * 329.99506 * 21 19 17 25 25 C 1.55157 * 102.93997 * 22.18881 * 14 13 12 26 26 C 1.53001 * 111.00592 * 82.57490 * 25 14 13 27 27 C 1.53005 * 111.00250 * 206.38711 * 25 14 13 28 28 C 1.47423 * 125.64524 * 184.35501 * 12 10 8 29 29 H 1.09007 * 109.46797 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47176 * 299.99749 * 1 2 3 31 31 H 1.08997 * 109.47158 * 60.00321 * 1 2 3 32 32 H 1.08998 * 109.46790 * 239.99952 * 2 1 3 33 33 H 1.08996 * 109.46858 * 120.00136 * 2 1 3 34 34 H 1.09003 * 110.90367 * 102.11724 * 5 3 2 35 35 H 1.08989 * 110.94086 * 338.52536 * 5 3 2 36 36 H 1.09007 * 110.62096 * 278.52898 * 6 5 3 37 37 H 1.09000 * 110.61905 * 155.52688 * 6 5 3 38 38 H 1.09007 * 109.88055 * 300.42787 * 13 12 10 39 39 H 1.08997 * 109.88588 * 61.44518 * 13 12 10 40 40 H 0.97002 * 119.99348 * 93.54682 * 16 14 13 41 41 H 0.96998 * 120.00499 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.46996 * 59.99843 * 26 25 14 43 43 H 1.09005 * 109.47300 * 179.97438 * 26 25 14 44 44 H 1.08998 * 109.46658 * 299.99810 * 26 25 14 45 45 H 1.08995 * 109.46912 * 59.99852 * 27 25 14 46 46 H 1.08998 * 109.46868 * 180.02562 * 27 25 14 47 47 H 1.09003 * 109.47335 * 299.99915 * 27 25 14 48 48 H 1.08998 * 110.37150 * 274.75111 * 28 12 10 49 49 H 1.09001 * 110.36817 * 37.07911 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6584 1.9811 0.8674 5 6 1.6302 2.1620 -1.3081 6 6 2.9035 2.9807 -1.6409 7 8 3.9805 2.1033 -1.2473 8 6 3.5806 1.4729 -0.0189 9 1 3.9504 2.0478 0.8301 10 6 4.1216 0.0675 0.0356 11 8 4.4802 -0.4842 -0.9833 12 7 4.2069 -0.5764 1.2166 13 6 3.7212 -0.0670 2.5073 14 6 4.0572 -1.1295 3.5749 15 1 4.3881 -0.6562 4.4993 16 7 2.9047 -2.0001 3.8204 17 6 1.9530 -1.6346 4.7346 18 1 2.0518 -0.7045 5.2744 19 6 0.8608 -2.4592 4.9668 20 7 -0.0542 -2.1077 5.8452 21 14 0.6895 -4.0677 4.0326 22 1 1.3573 -5.1549 4.7923 23 1 -0.7500 -4.3924 3.8656 24 1 1.3250 -3.9345 2.6970 25 6 5.2169 -1.9256 2.9200 26 6 6.5554 -1.2133 3.1252 27 6 5.2723 -3.3566 3.4585 28 6 4.7969 -1.9110 1.4267 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.7778 2.8201 -1.1393 35 1 1.4132 1.4422 -2.0971 36 1 2.9290 3.9036 -1.0613 37 1 2.9538 3.1952 -2.7085 38 1 4.2218 0.8710 2.7476 39 1 2.6434 0.0889 2.4624 40 1 2.8159 -2.8354 3.3353 41 1 -0.8177 -2.6837 6.0072 42 1 6.7561 -1.1175 4.1923 43 1 7.3509 -1.7929 2.6568 44 1 6.5126 -0.2225 2.6730 45 1 4.3328 -3.8639 3.2394 46 1 6.0942 -3.8920 2.9833 47 1 5.4297 -3.3333 4.5369 48 1 4.0579 -2.6878 1.2305 49 1 5.6689 -2.0454 0.7866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995910443.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:30 Heat of formation + Delta-G solvation = -66.604372 kcal Electronic energy + Delta-G solvation = -28515.333478 eV Core-core repulsion = 24863.702848 eV Total energy + Delta-G solvation = -3651.630630 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.79310 -39.27830 -37.47919 -34.82148 -34.02721 -33.22610 -31.14175 -30.38043 -29.51304 -28.30624 -26.93333 -26.21626 -23.94842 -23.40333 -22.77494 -21.54324 -20.69099 -19.15184 -18.61051 -17.64071 -17.06129 -16.46017 -16.09952 -15.79471 -14.83514 -14.78564 -14.49515 -14.41195 -14.18111 -13.81023 -13.74650 -13.35272 -12.94104 -12.82540 -12.54029 -12.45676 -12.26425 -12.13773 -12.04372 -11.90005 -11.67353 -11.56150 -11.31865 -11.30555 -11.08934 -11.02361 -10.70475 -10.65035 -10.61241 -10.41118 -10.30017 -10.07220 -9.93245 -9.66173 -9.33396 -9.04922 -8.32809 -7.41687 -5.88343 -3.25168 2.75618 3.02968 3.29340 3.32214 3.38712 3.99645 4.33178 4.48854 4.50263 4.63089 4.74010 4.92832 4.94952 5.01689 5.06997 5.20450 5.25004 5.31938 5.42541 5.45303 5.49107 5.52671 5.57430 5.60502 5.63019 5.78349 5.81540 5.82407 5.83913 5.93109 6.00539 6.03104 6.06967 6.10915 6.18971 6.20340 6.22802 6.33739 6.39869 6.48299 6.51525 6.63934 6.64833 6.75488 7.77738 7.86418 8.30390 8.39526 9.07694 9.80320 9.99004 11.29358 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.005794 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.218505 B = 4831.069380 C = 6151.391805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C -0.106 4.106 4 H 0.094 0.906 5 C -0.148 4.148 6 C 0.045 3.955 7 O -0.352 6.352 8 C 0.067 3.933 9 H 0.088 0.912 10 C 0.536 3.464 11 O -0.536 6.536 12 N -0.607 5.607 13 C 0.066 3.934 14 C 0.186 3.814 15 H 0.079 0.921 16 N -0.736 5.736 17 C -0.249 4.249 18 H 0.092 0.908 19 C 0.013 3.987 20 N -0.929 5.929 21 Si 0.876 3.124 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.091 4.091 26 C -0.129 4.129 27 C -0.127 4.127 28 C 0.121 3.879 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.364 0.636 41 H 0.260 0.740 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.269 7.282 -9.908 14.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C -0.125 4.125 4 H 0.112 0.888 5 C -0.185 4.185 6 C -0.032 4.032 7 O -0.270 6.270 8 C 0.006 3.994 9 H 0.106 0.894 10 C 0.324 3.676 11 O -0.413 6.413 12 N -0.342 5.342 13 C -0.059 4.059 14 C 0.074 3.926 15 H 0.097 0.903 16 N -0.379 5.379 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.183 4.183 20 N -0.576 5.576 21 Si 0.706 3.294 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.093 4.093 26 C -0.187 4.187 27 C -0.185 4.185 28 C -0.001 4.001 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.198 0.802 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.485 7.108 -10.446 14.686 hybrid contribution -0.622 -1.045 -0.460 1.301 sum 6.863 6.063 -10.907 14.241 Atomic orbital electron populations 1.21709 0.95053 1.02012 1.01537 1.21873 0.96899 0.94561 1.03729 1.22506 0.92279 0.98472 0.99290 0.88778 1.23230 0.98378 0.99447 0.97465 1.23609 0.85670 0.92951 1.00937 1.88951 1.39888 1.58814 1.39345 1.22681 0.95232 0.92157 0.89318 0.89388 1.19847 0.78214 0.87257 0.82297 1.90677 1.49402 1.68106 1.33149 1.48384 1.59386 1.18902 1.07531 1.23337 1.00506 0.98617 0.83488 1.21172 0.86784 0.89851 0.94790 0.90289 1.42808 1.23997 1.22584 1.48494 1.19018 0.99225 1.05612 1.13950 0.88989 1.24616 0.96979 0.98106 0.98642 1.69681 1.12831 1.38360 1.36692 0.86694 0.77273 0.85420 0.80000 1.20893 1.21681 1.20315 1.22089 0.95952 0.97093 0.94169 1.21665 0.95126 1.00059 1.01802 1.21598 1.01339 0.94011 1.01526 1.22292 0.97623 0.84399 0.95793 0.92593 0.92200 0.93141 0.91635 0.89656 0.89871 0.90128 0.91961 0.88776 0.92399 0.89776 0.80179 0.92947 0.92071 0.92708 0.92650 0.92312 0.93150 0.91571 0.91721 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.74 37.16 0.36 -1.63 16 2 C -0.13 -1.99 4.10 -26.73 -0.11 -2.10 16 3 C -0.11 -1.36 2.94 -89.09 -0.26 -1.62 16 4 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 5 C -0.15 -1.58 5.76 -24.72 -0.14 -1.72 16 6 C 0.04 0.48 7.72 38.21 0.29 0.78 16 7 O -0.35 -5.32 10.80 -54.03 -0.58 -5.91 16 8 C 0.07 0.97 3.21 -27.31 -0.09 0.88 16 9 H 0.09 1.12 7.53 -51.93 -0.39 0.73 16 10 C 0.54 9.14 5.01 -10.98 -0.06 9.09 16 11 O -0.54 -11.01 16.74 -13.24 -0.22 -11.23 16 12 N -0.61 -9.65 2.62 -170.38 -0.45 -10.09 16 13 C 0.07 1.02 5.30 -3.07 -0.02 1.01 16 14 C 0.19 3.11 2.86 -66.09 -0.19 2.92 16 15 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 16 N -0.74 -15.40 4.42 -51.65 -0.23 -15.63 16 17 C -0.25 -6.31 10.46 -15.06 -0.16 -6.47 16 18 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 19 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 20 N -0.93 -27.52 13.97 55.49 0.78 -26.75 16 21 Si 0.88 21.03 27.74 -169.99 -4.71 16.31 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 25 C -0.09 -1.30 0.83 -152.24 -0.13 -1.43 16 26 C -0.13 -1.54 8.58 37.16 0.32 -1.22 16 27 C -0.13 -1.79 8.22 37.16 0.31 -1.48 16 28 C 0.12 1.89 5.81 -2.41 -0.01 1.88 16 29 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.58 7.36 -51.93 -0.38 0.20 16 32 H 0.06 1.08 7.43 -51.93 -0.39 0.70 16 33 H 0.09 1.46 4.71 -51.93 -0.24 1.22 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.92 7.78 -51.94 -0.40 0.51 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.78 7.79 -51.93 -0.40 0.37 16 39 H 0.08 1.45 6.34 -51.93 -0.33 1.12 16 40 H 0.36 7.73 3.96 -40.82 -0.16 7.57 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.67 7.91 -51.93 -0.41 0.26 16 45 H 0.06 0.93 6.38 -51.93 -0.33 0.59 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.06 1.09 7.99 -51.93 -0.41 0.67 16 49 H 0.07 1.10 8.00 -51.93 -0.42 0.68 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -31.19 372.08 -8.30 -39.49 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.51 Total: 9.06 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 0.02 Total: -0.86 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.10 Total: -52.47 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.81 Total: -17.14 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.31 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.19 -8.30 -39.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995910443.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.111 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds