Wall clock time and date at job start Tue Mar 31 2020 10:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47044 * 2 1 4 4 H 1.09001 * 110.43834 * 58.12846 * 3 2 1 5 5 C 1.54815 * 110.48527 * 295.58315 * 3 2 1 6 6 C 1.54994 * 102.09193 * 220.30794 * 5 3 2 7 7 O 1.44385 * 103.48994 * 37.02351 * 6 5 3 8 8 C 1.43743 * 106.97535 * 319.94246 * 7 6 5 9 9 H 1.09000 * 109.87427 * 267.08673 * 8 7 6 10 10 C 1.50693 * 109.87945 * 145.93560 * 8 7 6 11 11 O 1.21283 * 120.00239 * 341.12778 * 10 8 7 12 12 N 1.34786 * 119.99935 * 161.12933 * 10 8 7 13 13 C 1.47015 * 125.64636 * 4.67361 * 12 10 8 14 14 C 1.54328 * 107.27020 * 181.02049 * 13 12 10 15 15 H 1.08999 * 110.71842 * 140.54993 * 14 13 12 16 16 N 1.46501 * 110.71844 * 263.82517 * 14 13 12 17 17 C 1.36933 * 119.99816 * 273.54128 * 16 14 13 18 18 H 1.07992 * 120.00363 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99849 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00193 * 180.02562 * 19 17 16 21 21 Si 1.86806 * 119.99905 * 0.02562 * 19 17 16 22 22 H 1.48488 * 109.47142 * 89.99693 * 21 19 17 23 23 H 1.48506 * 109.47012 * 209.99996 * 21 19 17 24 24 H 1.48507 * 109.46876 * 329.99506 * 21 19 17 25 25 C 1.55157 * 102.93997 * 22.18881 * 14 13 12 26 26 C 1.53001 * 111.00592 * 82.57490 * 25 14 13 27 27 C 1.53005 * 111.00250 * 206.38711 * 25 14 13 28 28 C 1.47423 * 125.64524 * 184.35501 * 12 10 8 29 29 H 1.09007 * 109.46797 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47176 * 299.99749 * 1 2 3 31 31 H 1.08997 * 109.47158 * 60.00321 * 1 2 3 32 32 H 1.08998 * 109.46790 * 239.99952 * 2 1 3 33 33 H 1.08996 * 109.46858 * 120.00136 * 2 1 3 34 34 H 1.09003 * 110.90367 * 102.11724 * 5 3 2 35 35 H 1.08989 * 110.94086 * 338.52536 * 5 3 2 36 36 H 1.09007 * 110.62096 * 278.52898 * 6 5 3 37 37 H 1.09000 * 110.61905 * 155.52688 * 6 5 3 38 38 H 1.09007 * 109.88055 * 300.42787 * 13 12 10 39 39 H 1.08997 * 109.88588 * 61.44518 * 13 12 10 40 40 H 0.97002 * 119.99348 * 93.54682 * 16 14 13 41 41 H 0.96998 * 120.00499 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.46996 * 59.99843 * 26 25 14 43 43 H 1.09005 * 109.47300 * 179.97438 * 26 25 14 44 44 H 1.08998 * 109.46658 * 299.99810 * 26 25 14 45 45 H 1.08995 * 109.46912 * 59.99852 * 27 25 14 46 46 H 1.08998 * 109.46868 * 180.02562 * 27 25 14 47 47 H 1.09003 * 109.47335 * 299.99915 * 27 25 14 48 48 H 1.08998 * 110.37150 * 274.75111 * 28 12 10 49 49 H 1.09001 * 110.36817 * 37.07911 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6584 1.9811 0.8674 5 6 1.6302 2.1620 -1.3081 6 6 2.9035 2.9807 -1.6409 7 8 3.9805 2.1033 -1.2473 8 6 3.5806 1.4729 -0.0189 9 1 3.9504 2.0478 0.8301 10 6 4.1216 0.0675 0.0356 11 8 4.4802 -0.4842 -0.9833 12 7 4.2069 -0.5764 1.2166 13 6 3.7212 -0.0670 2.5073 14 6 4.0572 -1.1295 3.5749 15 1 4.3881 -0.6562 4.4993 16 7 2.9047 -2.0001 3.8204 17 6 1.9530 -1.6346 4.7346 18 1 2.0518 -0.7045 5.2744 19 6 0.8608 -2.4592 4.9668 20 7 -0.0542 -2.1077 5.8452 21 14 0.6895 -4.0677 4.0326 22 1 1.3573 -5.1549 4.7923 23 1 -0.7500 -4.3924 3.8656 24 1 1.3250 -3.9345 2.6970 25 6 5.2169 -1.9256 2.9200 26 6 6.5554 -1.2133 3.1252 27 6 5.2723 -3.3566 3.4585 28 6 4.7969 -1.9110 1.4267 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.7778 2.8201 -1.1393 35 1 1.4132 1.4422 -2.0971 36 1 2.9290 3.9036 -1.0613 37 1 2.9538 3.1952 -2.7085 38 1 4.2218 0.8710 2.7476 39 1 2.6434 0.0889 2.4624 40 1 2.8159 -2.8354 3.3353 41 1 -0.8177 -2.6837 6.0072 42 1 6.7561 -1.1175 4.1923 43 1 7.3509 -1.7929 2.6568 44 1 6.5126 -0.2225 2.6730 45 1 4.3328 -3.8639 3.2394 46 1 6.0942 -3.8920 2.9833 47 1 5.4297 -3.3333 4.5369 48 1 4.0579 -2.6878 1.2305 49 1 5.6689 -2.0454 0.7866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995910443.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:29 Heat of formation + Delta-G solvation = -85.301071 kcal Electronic energy + Delta-G solvation = -28516.144227 eV Core-core repulsion = 24863.702848 eV Total energy + Delta-G solvation = -3652.441380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.99961 -40.45418 -38.80405 -36.01448 -35.70646 -34.53595 -33.01124 -31.33320 -30.63424 -29.73580 -28.10298 -27.39343 -25.53486 -24.67790 -23.73618 -22.98798 -21.82247 -20.60305 -19.85301 -19.37139 -18.23048 -17.57369 -17.38107 -17.05912 -16.41043 -16.15594 -15.78410 -15.63747 -15.37510 -15.07913 -14.99752 -14.64299 -14.39983 -14.29814 -13.83745 -13.65829 -13.51461 -13.45189 -13.20788 -13.10455 -12.93514 -12.81128 -12.73212 -12.61208 -12.26117 -12.23732 -12.14522 -11.94705 -11.86781 -11.71128 -11.60747 -11.51722 -11.30834 -11.11756 -10.99846 -10.50504 -9.67968 -9.29720 -7.99163 -5.30831 1.36495 1.37351 1.43373 1.47799 1.79679 2.48131 2.97318 3.24023 3.31160 3.37791 3.52661 3.60462 3.66633 3.77982 3.96398 3.97097 4.09736 4.24491 4.25979 4.30463 4.37982 4.41209 4.44789 4.56342 4.59194 4.65516 4.73067 4.75226 4.82171 4.86537 4.88388 4.93576 4.96767 5.04800 5.06097 5.07001 5.12517 5.17486 5.23884 5.27750 5.33574 5.37875 5.49843 5.77268 5.83304 6.24991 6.47930 7.07525 7.11053 7.86560 8.04006 9.21877 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012911 B = 0.005794 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.218505 B = 4831.069380 C = 6151.391805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.128 4.128 3 C -0.104 4.104 4 H 0.111 0.889 5 C -0.142 4.142 6 C 0.041 3.959 7 O -0.382 6.382 8 C 0.069 3.931 9 H 0.109 0.891 10 C 0.531 3.469 11 O -0.579 6.579 12 N -0.603 5.603 13 C 0.075 3.925 14 C 0.175 3.825 15 H 0.085 0.915 16 N -0.739 5.739 17 C -0.215 4.215 18 H 0.071 0.929 19 C -0.050 4.050 20 N -0.978 5.978 21 Si 0.931 3.069 22 H -0.279 1.279 23 H -0.302 1.302 24 H -0.264 1.264 25 C -0.078 4.078 26 C -0.123 4.123 27 C -0.127 4.127 28 C 0.118 3.882 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.363 0.637 41 H 0.255 0.745 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.055 0.945 45 H 0.038 0.962 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.047 0.953 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.573 8.604 -10.677 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.165 4.165 3 C -0.123 4.123 4 H 0.129 0.871 5 C -0.180 4.180 6 C -0.035 4.035 7 O -0.301 6.301 8 C 0.008 3.992 9 H 0.126 0.874 10 C 0.321 3.679 11 O -0.459 6.459 12 N -0.337 5.337 13 C -0.050 4.050 14 C 0.066 3.934 15 H 0.103 0.897 16 N -0.381 5.381 17 C -0.346 4.346 18 H 0.089 0.911 19 C -0.242 4.242 20 N -0.629 5.629 21 Si 0.761 3.239 22 H -0.205 1.205 23 H -0.229 1.229 24 H -0.189 1.189 25 C -0.079 4.079 26 C -0.181 4.181 27 C -0.185 4.185 28 C -0.005 4.005 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.197 0.803 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.065 0.935 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.844 8.447 -11.233 16.605 hybrid contribution -0.948 -1.396 -0.251 1.706 sum 7.896 7.051 -11.484 15.619 Atomic orbital electron populations 1.21683 0.94091 1.01510 1.02647 1.21753 0.97696 0.95818 1.01242 1.22539 0.91308 0.97188 1.01298 0.87103 1.23234 0.99531 0.99444 0.95744 1.23889 0.84239 0.93042 1.02317 1.88925 1.41794 1.59692 1.39640 1.22757 0.95986 0.90462 0.90018 0.87384 1.20447 0.77413 0.88327 0.81731 1.90647 1.51391 1.69342 1.34477 1.48414 1.58837 1.18884 1.07528 1.23166 0.99871 0.99240 0.82735 1.21431 0.86281 0.90084 0.95631 0.89711 1.42813 1.24415 1.23277 1.47607 1.19006 0.99057 1.03859 1.12651 0.91067 1.25192 0.97437 1.01295 1.00239 1.69825 1.13887 1.39802 1.39355 0.85781 0.76417 0.82209 0.79536 1.20496 1.22946 1.18929 1.22048 0.96177 0.97243 0.92451 1.21639 0.93712 0.99900 1.02821 1.21602 1.01268 0.93864 1.01720 1.22330 0.97268 0.83962 0.96891 0.93974 0.92210 0.90796 0.93938 0.92249 0.87005 0.91230 0.89476 0.87401 0.89414 0.91441 0.80258 0.93596 0.90875 0.91207 0.92615 0.94335 0.90687 0.91592 0.93494 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.74 71.98 0.70 -3.06 16 2 C -0.13 -3.77 4.10 30.60 0.13 -3.64 16 3 C -0.10 -2.47 2.94 -9.80 -0.03 -2.49 16 4 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 5 C -0.14 -2.66 5.76 31.90 0.18 -2.47 16 6 C 0.04 0.75 7.72 72.66 0.56 1.32 16 7 O -0.38 -10.88 10.80 -131.01 -1.42 -12.30 16 8 C 0.07 1.85 3.21 30.22 0.10 1.95 16 9 H 0.11 2.44 7.53 -2.39 -0.02 2.42 16 10 C 0.53 17.81 5.01 87.65 0.44 18.25 16 11 O -0.58 -23.94 16.74 14.93 0.25 -23.69 16 12 N -0.60 -18.60 2.62 -811.35 -2.13 -20.72 16 13 C 0.07 2.20 5.30 86.73 0.46 2.66 16 14 C 0.18 5.61 2.86 46.18 0.13 5.74 16 15 H 0.09 2.67 8.03 -2.39 -0.02 2.65 16 16 N -0.74 -30.44 4.42 -317.33 -1.40 -31.84 16 17 C -0.21 -10.94 10.46 84.03 0.88 -10.06 16 18 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 19 C -0.05 -2.74 5.50 84.86 0.47 -2.27 16 20 N -0.98 -59.35 13.97 21.65 0.30 -59.05 16 21 Si 0.93 44.08 27.74 68.60 1.90 45.98 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 24 H -0.26 -11.70 6.52 99.48 0.65 -11.06 16 25 C -0.08 -2.06 0.83 -50.71 -0.04 -2.10 16 26 C -0.12 -2.56 8.58 71.98 0.62 -1.94 16 27 C -0.13 -3.33 8.22 71.98 0.59 -2.74 16 28 C 0.12 3.57 5.81 86.93 0.50 4.07 16 29 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.58 7.36 -2.39 -0.02 1.57 16 32 H 0.04 1.43 7.43 -2.39 -0.02 1.41 16 33 H 0.06 2.05 4.71 -2.39 -0.01 2.03 16 34 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.46 7.78 -2.39 -0.02 1.45 16 36 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.09 2.10 7.79 -2.38 -0.02 2.08 16 39 H 0.07 2.26 6.34 -2.39 -0.02 2.25 16 40 H 0.36 15.22 3.96 -92.71 -0.37 14.85 16 41 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.05 1.17 7.91 -2.39 -0.02 1.15 16 45 H 0.04 1.16 6.38 -2.39 -0.02 1.15 16 46 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.05 1.58 7.99 -2.39 -0.02 1.56 16 49 H 0.08 2.23 8.00 -2.39 -0.02 2.21 16 Total: -1.00 -69.38 372.08 3.70 -65.69 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: 0.50 Total: 32.73 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.69 Total: 3.20 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -3.23 Total: -111.61 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -1.17 Total: -35.99 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.90 Total: 45.98 kcal Total: -69.38 3.70 -65.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995910443.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.614 kcal (2) G-P(sol) polarization free energy of solvation -69.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds