Wall clock time and date at job start Tue Mar 31 2020 10:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47245 * 2 1 4 4 H 1.09005 * 109.47887 * 54.97193 * 3 2 1 5 5 C 1.53089 * 109.48279 * 174.99934 * 3 2 1 6 6 C 1.53178 * 109.16290 * 177.60649 * 5 3 2 7 7 H 1.08997 * 109.54237 * 183.06593 * 6 5 3 8 8 C 1.50691 * 109.54738 * 62.88319 * 6 5 3 9 9 O 1.21284 * 120.00044 * 353.10423 * 8 6 5 10 10 N 1.34782 * 120.00050 * 173.10538 * 8 6 5 11 11 C 1.46926 * 120.63101 * 174.73166 * 10 8 6 12 12 C 1.53192 * 108.77596 * 126.36776 * 11 10 8 13 13 C 1.53042 * 109.30889 * 54.63613 * 12 11 10 14 14 N 1.46503 * 109.44688 * 178.61778 * 13 12 11 15 15 C 1.36931 * 120.00414 * 275.06293 * 14 13 12 16 16 H 1.08009 * 119.99551 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00314 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99751 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46876 * 60.00245 * 19 17 15 21 21 H 1.48496 * 109.47081 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47243 * 300.00497 * 19 17 15 23 23 C 1.53040 * 109.53679 * 298.63439 * 13 12 11 24 24 C 1.46922 * 120.62917 * 354.70873 * 10 8 6 25 25 C 1.53182 * 109.10646 * 302.97056 * 6 5 3 26 26 C 1.53283 * 109.06342 * 56.94665 * 25 6 5 27 27 O 1.42901 * 109.48927 * 294.95098 * 3 2 1 28 28 H 1.08998 * 109.47243 * 300.00289 * 1 2 3 29 29 H 1.09005 * 109.46863 * 59.99670 * 1 2 3 30 30 H 1.08995 * 109.46803 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47684 * 240.00345 * 2 1 3 32 32 H 1.09002 * 109.47152 * 119.99435 * 2 1 3 33 33 H 1.08997 * 109.51987 * 57.69737 * 5 3 2 34 34 H 1.09000 * 109.52050 * 297.50525 * 5 3 2 35 35 H 1.08994 * 109.58776 * 246.16405 * 11 10 8 36 36 H 1.09009 * 109.58463 * 6.58221 * 11 10 8 37 37 H 1.08996 * 109.49449 * 174.58682 * 12 11 10 38 38 H 1.08998 * 109.49979 * 294.68390 * 12 11 10 39 39 H 1.09001 * 109.46153 * 58.65726 * 13 12 11 40 40 H 0.97002 * 119.99449 * 95.05841 * 14 13 12 41 41 H 0.96995 * 120.00017 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.49628 * 301.40784 * 23 13 12 43 43 H 1.09007 * 109.51658 * 181.33368 * 23 13 12 44 44 H 1.09000 * 109.58792 * 353.42246 * 24 10 8 45 45 H 1.09008 * 109.58292 * 113.84427 * 24 10 8 46 46 H 1.08999 * 109.52367 * 176.93176 * 25 6 5 47 47 H 1.09001 * 109.52458 * 297.12510 * 25 6 5 48 48 H 1.09000 * 109.46134 * 182.44737 * 26 25 6 49 49 H 1.08997 * 109.46261 * 62.43402 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6051 1.9819 0.8415 5 6 3.5658 1.4447 0.1258 6 6 4.0733 2.8886 0.0649 7 1 5.1627 2.8939 0.0992 8 6 3.5283 3.6645 1.2361 9 8 2.7076 3.1568 1.9707 10 7 3.9527 4.9226 1.4673 11 6 3.3484 5.7325 2.5339 12 6 4.4612 6.2505 3.4504 13 6 5.5034 6.9933 2.6110 14 7 6.5523 7.5185 3.4887 15 6 6.3829 8.7262 4.1114 16 1 5.4761 9.2918 3.9552 17 6 7.3766 9.2235 4.9434 18 7 8.4817 8.5344 5.1334 19 14 7.1458 10.8714 5.7923 20 1 5.9438 10.8158 6.6625 21 1 8.3420 11.1744 6.6184 22 1 6.9683 11.9341 4.7704 23 6 6.1229 6.0307 1.5953 24 6 5.0290 5.5102 0.6579 25 6 3.5987 3.5322 -1.2416 26 6 2.0699 3.4483 -1.3146 27 8 1.6632 2.0815 -1.2214 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9995 0.8712 -0.6933 34 1 3.8534 0.9974 1.0773 35 1 2.8145 6.5752 2.0948 36 1 2.6559 5.1191 3.1106 37 1 4.0371 6.9306 4.1890 38 1 4.9348 5.4104 3.9583 39 1 5.0242 7.8183 2.0840 40 1 7.3667 7.0105 3.6287 41 1 9.1762 8.8821 5.7144 42 1 6.5810 5.1927 2.1207 43 1 6.8819 6.5540 1.0136 44 1 5.4454 4.7502 -0.0033 45 1 4.6322 6.3349 0.0658 46 1 3.9099 4.5766 -1.2673 47 1 4.0332 3.0008 -2.0883 48 1 1.7281 3.8655 -2.2618 49 1 1.6354 4.0137 -0.4903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997169744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:17 Heat of formation + Delta-G solvation = -84.971705 kcal Electronic energy + Delta-G solvation = -27229.645435 eV Core-core repulsion = 23577.218338 eV Total energy + Delta-G solvation = -3652.427097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.99543 -38.88418 -37.25884 -34.77226 -34.11307 -33.81639 -31.98799 -30.81261 -29.97192 -29.28549 -26.16935 -24.85286 -23.99892 -23.11197 -22.75384 -21.67842 -21.16886 -19.92650 -18.62972 -17.15659 -16.97654 -16.54927 -16.33798 -15.73306 -15.32468 -14.87935 -14.59848 -14.16639 -14.07600 -13.84855 -13.79245 -13.59254 -13.48656 -13.27277 -13.13159 -12.60250 -12.46076 -12.25467 -12.14591 -11.87343 -11.71309 -11.51029 -11.32501 -11.08514 -10.95030 -10.91975 -10.86296 -10.82103 -10.51336 -10.44436 -10.28974 -9.94502 -9.76800 -9.69759 -9.20219 -8.93897 -8.52770 -7.02003 -5.81329 -3.10687 2.59979 3.03315 3.40625 3.45365 3.46199 3.66864 4.30365 4.41204 4.53500 4.56598 4.69696 4.76544 4.93008 5.03138 5.06572 5.15669 5.21992 5.29668 5.30781 5.38544 5.40063 5.42350 5.52475 5.55390 5.60719 5.65497 5.68053 5.72734 5.77963 5.81728 5.84930 5.85943 5.93707 5.94245 6.10566 6.16832 6.21520 6.25591 6.40482 6.50961 6.55816 6.87747 7.00655 7.16813 7.47022 7.64453 8.19299 8.36969 9.48137 10.04984 10.39580 11.41175 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034151 B = 0.002728 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.682118 B =10263.158780 C =10441.405512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.092 0.908 5 C -0.127 4.127 6 C -0.113 4.113 7 H 0.100 0.900 8 C 0.518 3.482 9 O -0.544 6.544 10 N -0.603 5.603 11 C 0.111 3.889 12 C -0.149 4.149 13 C 0.180 3.820 14 N -0.724 5.724 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.141 4.141 24 C 0.108 3.892 25 C -0.149 4.149 26 C 0.062 3.938 27 O -0.380 6.380 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.048 0.952 40 H 0.383 0.617 41 H 0.256 0.744 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.175 -13.967 -14.979 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.018 3.982 4 H 0.110 0.890 5 C -0.165 4.165 6 C -0.134 4.134 7 H 0.118 0.882 8 C 0.306 3.694 9 O -0.422 6.422 10 N -0.336 5.336 11 C -0.011 4.011 12 C -0.190 4.190 13 C 0.069 3.931 14 N -0.364 5.364 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.180 4.180 24 C -0.015 4.015 25 C -0.187 4.187 26 C -0.015 4.015 27 O -0.300 6.300 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.217 0.783 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.112 0.888 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.733 -14.133 -14.650 23.495 hybrid contribution 0.643 1.042 0.858 1.495 sum -11.090 -13.091 -13.792 22.013 Atomic orbital electron populations 1.21702 0.95426 1.01163 1.02300 1.21515 0.96649 0.94702 1.02221 1.22539 0.93323 0.94277 0.88013 0.88999 1.21994 0.97195 0.94294 1.03040 1.21407 1.02068 0.96117 0.93825 0.88224 1.20547 0.81753 0.81352 0.85761 1.90598 1.34513 1.68283 1.48810 1.48178 1.36933 1.13595 1.34904 1.21713 0.96399 0.94129 0.88868 1.22657 0.96889 1.00673 0.98823 1.20155 0.89744 0.93066 0.90096 1.42417 1.18094 1.22046 1.53889 1.19181 1.01550 0.95612 1.20853 0.91233 1.24749 0.96612 0.98859 1.00665 1.69647 1.07772 1.38781 1.41900 0.86275 0.76844 0.83781 0.79322 1.21248 1.21690 1.21251 1.22222 0.97438 1.00150 0.98172 1.21877 0.87877 0.98234 0.93503 1.22306 0.97835 1.02052 0.96503 1.22527 0.93155 0.83800 1.02012 1.87866 1.78709 1.24148 1.39241 0.92816 0.92133 0.93052 0.91657 0.90783 0.90726 0.90361 0.91865 0.89709 0.90760 0.92313 0.93444 0.78296 0.93422 0.91767 0.90417 0.90006 0.91186 0.89927 0.89875 0.88814 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.81 37.16 0.36 -1.02 16 2 C -0.11 -1.10 5.64 -26.73 -0.15 -1.25 16 3 C 0.08 0.86 2.35 -26.68 -0.06 0.80 16 4 H 0.09 1.28 5.56 -51.93 -0.29 1.00 16 5 C -0.13 -1.31 4.58 -26.59 -0.12 -1.44 16 6 C -0.11 -1.16 2.17 -91.59 -0.20 -1.36 16 7 H 0.10 0.90 7.08 -51.93 -0.37 0.53 16 8 C 0.52 6.94 5.74 -10.99 -0.06 6.87 16 9 O -0.54 -8.86 13.06 5.55 0.07 -8.79 16 10 N -0.60 -7.94 2.97 -172.77 -0.51 -8.45 16 11 C 0.11 1.63 6.44 -3.71 -0.02 1.60 16 12 C -0.15 -2.61 5.66 -26.61 -0.15 -2.76 16 13 C 0.18 3.33 2.73 -67.89 -0.19 3.14 16 14 N -0.72 -17.48 5.12 -53.38 -0.27 -17.75 16 15 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 16 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 18 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 19 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C -0.14 -2.08 5.55 -26.62 -0.15 -2.22 16 24 C 0.11 1.23 4.96 -3.72 -0.02 1.21 16 25 C -0.15 -1.28 5.31 -26.49 -0.14 -1.42 16 26 C 0.06 0.62 6.62 37.30 0.25 0.87 16 27 O -0.38 -4.44 9.95 -35.23 -0.35 -4.79 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.85 8.11 -51.93 -0.42 0.43 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.08 1.31 7.00 -51.92 -0.36 0.94 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 40 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.08 0.74 5.09 -51.93 -0.26 0.47 16 45 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 46 H 0.08 0.63 6.10 -51.93 -0.32 0.32 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.05 0.56 7.38 -51.93 -0.38 0.17 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -31.12 370.02 -9.28 -40.39 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.59 Total: 7.91 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.90 Total: -4.07 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.06 Total: -53.26 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.28 Total: -13.58 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.12 -9.28 -40.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997169744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.579 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds