Wall clock time and date at job start Tue Mar 31 2020 10:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47245 * 2 1 4 4 H 1.09005 * 109.47887 * 54.97193 * 3 2 1 5 5 C 1.53089 * 109.48279 * 174.99934 * 3 2 1 6 6 C 1.53178 * 109.16290 * 177.60649 * 5 3 2 7 7 H 1.08997 * 109.54237 * 183.06593 * 6 5 3 8 8 C 1.50691 * 109.54738 * 62.88319 * 6 5 3 9 9 O 1.21284 * 120.00044 * 353.10423 * 8 6 5 10 10 N 1.34782 * 120.00050 * 173.10538 * 8 6 5 11 11 C 1.46926 * 120.63101 * 174.73166 * 10 8 6 12 12 C 1.53192 * 108.77596 * 126.36776 * 11 10 8 13 13 C 1.53042 * 109.30889 * 54.63613 * 12 11 10 14 14 N 1.46503 * 109.44688 * 178.61778 * 13 12 11 15 15 C 1.36931 * 120.00414 * 275.06293 * 14 13 12 16 16 H 1.08009 * 119.99551 * 359.97438 * 15 14 13 17 17 C 1.38814 * 120.00314 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99751 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46876 * 60.00245 * 19 17 15 21 21 H 1.48496 * 109.47081 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47243 * 300.00497 * 19 17 15 23 23 C 1.53040 * 109.53679 * 298.63439 * 13 12 11 24 24 C 1.46922 * 120.62917 * 354.70873 * 10 8 6 25 25 C 1.53182 * 109.10646 * 302.97056 * 6 5 3 26 26 C 1.53283 * 109.06342 * 56.94665 * 25 6 5 27 27 O 1.42901 * 109.48927 * 294.95098 * 3 2 1 28 28 H 1.08998 * 109.47243 * 300.00289 * 1 2 3 29 29 H 1.09005 * 109.46863 * 59.99670 * 1 2 3 30 30 H 1.08995 * 109.46803 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47684 * 240.00345 * 2 1 3 32 32 H 1.09002 * 109.47152 * 119.99435 * 2 1 3 33 33 H 1.08997 * 109.51987 * 57.69737 * 5 3 2 34 34 H 1.09000 * 109.52050 * 297.50525 * 5 3 2 35 35 H 1.08994 * 109.58776 * 246.16405 * 11 10 8 36 36 H 1.09009 * 109.58463 * 6.58221 * 11 10 8 37 37 H 1.08996 * 109.49449 * 174.58682 * 12 11 10 38 38 H 1.08998 * 109.49979 * 294.68390 * 12 11 10 39 39 H 1.09001 * 109.46153 * 58.65726 * 13 12 11 40 40 H 0.97002 * 119.99449 * 95.05841 * 14 13 12 41 41 H 0.96995 * 120.00017 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.49628 * 301.40784 * 23 13 12 43 43 H 1.09007 * 109.51658 * 181.33368 * 23 13 12 44 44 H 1.09000 * 109.58792 * 353.42246 * 24 10 8 45 45 H 1.09008 * 109.58292 * 113.84427 * 24 10 8 46 46 H 1.08999 * 109.52367 * 176.93176 * 25 6 5 47 47 H 1.09001 * 109.52458 * 297.12510 * 25 6 5 48 48 H 1.09000 * 109.46134 * 182.44737 * 26 25 6 49 49 H 1.08997 * 109.46261 * 62.43402 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6051 1.9819 0.8415 5 6 3.5658 1.4447 0.1258 6 6 4.0733 2.8886 0.0649 7 1 5.1627 2.8939 0.0992 8 6 3.5283 3.6645 1.2361 9 8 2.7076 3.1568 1.9707 10 7 3.9527 4.9226 1.4673 11 6 3.3484 5.7325 2.5339 12 6 4.4612 6.2505 3.4504 13 6 5.5034 6.9933 2.6110 14 7 6.5523 7.5185 3.4887 15 6 6.3829 8.7262 4.1114 16 1 5.4761 9.2918 3.9552 17 6 7.3766 9.2235 4.9434 18 7 8.4817 8.5344 5.1334 19 14 7.1458 10.8714 5.7923 20 1 5.9438 10.8158 6.6625 21 1 8.3420 11.1744 6.6184 22 1 6.9683 11.9341 4.7704 23 6 6.1229 6.0307 1.5953 24 6 5.0290 5.5102 0.6579 25 6 3.5987 3.5322 -1.2416 26 6 2.0699 3.4483 -1.3146 27 8 1.6632 2.0815 -1.2214 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.9995 0.8712 -0.6933 34 1 3.8534 0.9974 1.0773 35 1 2.8145 6.5752 2.0948 36 1 2.6559 5.1191 3.1106 37 1 4.0371 6.9306 4.1890 38 1 4.9348 5.4104 3.9583 39 1 5.0242 7.8183 2.0840 40 1 7.3667 7.0105 3.6287 41 1 9.1762 8.8821 5.7144 42 1 6.5810 5.1927 2.1207 43 1 6.8819 6.5540 1.0136 44 1 5.4454 4.7502 -0.0033 45 1 4.6322 6.3349 0.0658 46 1 3.9099 4.5766 -1.2673 47 1 4.0332 3.0008 -2.0883 48 1 1.7281 3.8655 -2.2618 49 1 1.6354 4.0137 -0.4903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997169744.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:16 Heat of formation + Delta-G solvation = -104.418407 kcal Electronic energy + Delta-G solvation = -27230.488707 eV Core-core repulsion = 23577.218338 eV Total energy + Delta-G solvation = -3653.270370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.95931 -39.90380 -38.49094 -36.23389 -35.10944 -34.66589 -33.69816 -31.99751 -31.05771 -30.66276 -27.21062 -26.32608 -24.85912 -24.49770 -23.97938 -22.73083 -22.05207 -21.19687 -19.80103 -19.00864 -18.04936 -17.37175 -17.17634 -16.75892 -16.71521 -16.29584 -15.52047 -15.44680 -15.41885 -15.23180 -14.98974 -14.63998 -14.53112 -14.35322 -14.06334 -13.92356 -13.53637 -13.31749 -13.13783 -13.03367 -12.81616 -12.69674 -12.64291 -12.45271 -12.24423 -12.18821 -12.06279 -11.94658 -11.81924 -11.69379 -11.61018 -11.48143 -11.22021 -10.89659 -10.66501 -10.13292 -9.65500 -9.01920 -7.94773 -5.23137 1.46797 1.49098 1.55026 1.58317 1.99677 2.55631 2.89316 3.37991 3.41545 3.63401 3.76849 3.83462 3.85078 3.95253 4.03301 4.13708 4.16221 4.27685 4.30362 4.36417 4.39369 4.46533 4.52998 4.60580 4.62320 4.72706 4.76630 4.80528 4.84331 4.86369 4.91215 4.93691 4.97615 5.04796 5.08561 5.10527 5.12822 5.18563 5.31910 5.33221 5.44010 5.47746 5.52687 5.61314 6.27409 6.35679 6.43626 7.15807 7.33522 8.09887 8.32170 9.28517 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034151 B = 0.002728 C = 0.002681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.682118 B =10263.158780 C =10441.405512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C 0.075 3.925 4 H 0.060 0.940 5 C -0.126 4.126 6 C -0.110 4.110 7 H 0.121 0.879 8 C 0.513 3.487 9 O -0.578 6.578 10 N -0.605 5.605 11 C 0.122 3.878 12 C -0.137 4.137 13 C 0.174 3.826 14 N -0.738 5.738 15 C -0.237 4.237 16 H 0.076 0.924 17 C -0.077 4.077 18 N -0.971 5.971 19 Si 0.970 3.030 20 H -0.281 1.281 21 H -0.298 1.298 22 H -0.276 1.276 23 C -0.132 4.132 24 C 0.114 3.886 25 C -0.142 4.142 26 C 0.055 3.945 27 O -0.391 6.391 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.036 0.964 39 H 0.051 0.949 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.116 0.884 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.105 0.895 48 H 0.114 0.886 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.477 -14.195 -17.544 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.151 4.151 3 C 0.018 3.982 4 H 0.078 0.922 5 C -0.164 4.164 6 C -0.131 4.131 7 H 0.139 0.861 8 C 0.303 3.697 9 O -0.459 6.459 10 N -0.337 5.337 11 C -0.002 4.002 12 C -0.178 4.178 13 C 0.065 3.935 14 N -0.377 5.377 15 C -0.369 4.369 16 H 0.094 0.906 17 C -0.269 4.269 18 N -0.621 5.621 19 Si 0.799 3.201 20 H -0.207 1.207 21 H -0.224 1.224 22 H -0.202 1.202 23 C -0.171 4.171 24 C -0.008 4.008 25 C -0.179 4.179 26 C -0.021 4.021 27 O -0.310 6.310 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.101 0.899 44 H 0.134 0.866 45 H 0.111 0.889 46 H 0.116 0.884 47 H 0.123 0.877 48 H 0.132 0.868 49 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.076 -14.363 -17.257 25.494 hybrid contribution 0.646 1.071 1.648 2.068 sum -11.430 -13.292 -15.610 23.473 Atomic orbital electron populations 1.21680 0.95437 1.01920 1.01352 1.21541 0.96693 0.93902 1.02930 1.22452 0.94094 0.94668 0.86967 0.92182 1.21995 0.96380 0.94732 1.03314 1.21499 1.03064 0.95498 0.93076 0.86096 1.21218 0.81138 0.81143 0.86240 1.90601 1.36068 1.68957 1.50258 1.48245 1.37284 1.13632 1.34571 1.21476 0.95046 0.94655 0.88987 1.22438 0.97373 0.99280 0.98732 1.20423 0.88829 0.94040 0.90179 1.42651 1.18948 1.21398 1.54658 1.19573 1.01190 0.96306 1.19840 0.90625 1.25532 0.96753 1.02378 1.02239 1.69803 1.08661 1.40482 1.43186 0.85267 0.76379 0.80162 0.78305 1.20731 1.22408 1.20159 1.22110 0.98545 0.98774 0.97671 1.22024 0.86242 0.99906 0.92670 1.22321 0.96500 1.03141 0.95964 1.22687 0.94424 0.82833 1.02174 1.87853 1.79195 1.24973 1.38999 0.93963 0.92841 0.91437 0.90550 0.90343 0.88616 0.91388 0.90103 0.90909 0.92766 0.94480 0.93142 0.79732 0.94125 0.92858 0.89852 0.86593 0.88944 0.88362 0.87704 0.86806 0.95561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.81 71.98 0.71 -1.94 16 2 C -0.11 -2.07 5.64 30.60 0.17 -1.90 16 3 C 0.08 1.65 2.35 30.63 0.07 1.72 16 4 H 0.06 1.72 5.56 -2.38 -0.01 1.71 16 5 C -0.13 -2.35 4.58 30.68 0.14 -2.21 16 6 C -0.11 -1.94 2.17 -11.42 -0.02 -1.96 16 7 H 0.12 1.65 7.08 -2.39 -0.02 1.64 16 8 C 0.51 13.01 5.74 87.65 0.50 13.52 16 9 O -0.58 -18.99 13.06 -3.04 -0.04 -19.03 16 10 N -0.61 -14.79 2.97 -818.91 -2.43 -17.23 16 11 C 0.12 3.47 6.44 86.36 0.56 4.03 16 12 C -0.14 -4.83 5.66 30.67 0.17 -4.66 16 13 C 0.17 6.32 2.73 45.02 0.12 6.45 16 14 N -0.74 -35.93 5.12 -322.80 -1.65 -37.58 16 15 C -0.24 -12.84 9.93 84.03 0.83 -12.01 16 16 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 18 N -0.97 -58.95 13.06 21.65 0.28 -58.66 16 19 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 C -0.13 -3.65 5.55 30.67 0.17 -3.48 16 24 C 0.11 2.19 4.96 86.36 0.43 2.61 16 25 C -0.14 -1.87 5.31 30.75 0.16 -1.71 16 26 C 0.06 0.98 6.62 72.08 0.48 1.46 16 27 O -0.39 -8.49 9.95 -148.98 -1.48 -9.98 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 1.03 7.83 -2.38 -0.02 1.01 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.40 8.11 -2.39 -0.02 1.38 16 35 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.28 7.00 -2.38 -0.02 2.26 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 40 H 0.37 19.65 7.80 -92.71 -0.72 18.92 16 41 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.12 1.51 5.09 -2.39 -0.01 1.50 16 45 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.10 1.02 6.10 -2.39 -0.01 1.00 16 47 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.03 0.58 7.38 -2.39 -0.02 0.56 16 Total: -1.00 -69.34 370.02 1.87 -67.47 By element: Atomic # 1 Polarization: 31.08 SS G_CDS: 0.20 Total: 31.28 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 4.96 Total: -3.98 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -3.80 Total: -113.47 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -1.52 Total: -29.01 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -69.34 1.87 -67.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997169744.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.946 kcal (2) G-P(sol) polarization free energy of solvation -69.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds