Wall clock time and date at job start Tue Mar 31 2020 10:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46766 * 2 1 4 4 H 1.08994 * 109.82735 * 305.56574 * 3 2 1 5 5 C 1.54387 * 109.82633 * 184.58937 * 3 2 1 6 6 C 1.55303 * 102.25068 * 219.12866 * 5 3 2 7 7 C 1.54947 * 100.94514 * 34.13576 * 6 5 3 8 8 H 1.09009 * 110.39188 * 82.50650 * 7 6 5 9 9 C 1.50691 * 110.31397 * 204.63705 * 7 6 5 10 10 O 1.21287 * 120.00096 * 112.16347 * 9 7 6 11 11 N 1.34777 * 120.00174 * 292.16366 * 9 7 6 12 12 C 1.46499 * 120.00072 * 0.02562 * 11 9 7 13 13 C 1.46500 * 120.00093 * 179.97438 * 11 9 7 14 14 C 1.53038 * 109.46314 * 240.02884 * 13 11 9 15 15 C 1.53196 * 109.31163 * 178.60382 * 14 13 11 16 16 N 1.46920 * 108.76724 * 54.65501 * 15 14 13 17 17 C 1.36940 * 120.62851 * 126.35852 * 16 15 14 18 18 H 1.08006 * 119.99866 * 207.69352 * 17 16 15 19 19 C 1.38806 * 119.99880 * 27.69951 * 17 16 15 20 20 N 1.31617 * 120.00316 * 17.35855 * 19 17 16 21 21 Si 1.86806 * 120.00068 * 197.36032 * 19 17 16 22 22 H 1.48505 * 109.46874 * 359.97438 * 21 19 17 23 23 H 1.48489 * 109.47422 * 119.99720 * 21 19 17 24 24 H 1.48502 * 109.46887 * 240.00084 * 21 19 17 25 25 C 1.46925 * 118.73990 * 306.38894 * 16 15 14 26 26 C 1.53045 * 109.45653 * 119.97540 * 13 11 9 27 27 O 1.43235 * 109.83054 * 66.45826 * 3 2 1 28 28 H 1.09006 * 109.47465 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47321 * 299.99446 * 1 2 3 30 30 H 1.08995 * 109.47689 * 59.99915 * 1 2 3 31 31 H 1.08996 * 109.47217 * 120.00324 * 2 1 3 32 32 H 1.09002 * 109.46886 * 240.00246 * 2 1 3 33 33 H 1.09001 * 110.84989 * 337.32189 * 5 3 2 34 34 H 1.08999 * 110.84466 * 100.94209 * 5 3 2 35 35 H 1.08998 * 111.13018 * 276.21371 * 6 5 3 36 36 H 1.09001 * 111.15940 * 152.06799 * 6 5 3 37 37 H 1.09005 * 109.47344 * 89.99212 * 12 11 9 38 38 H 1.08996 * 109.47257 * 210.00078 * 12 11 9 39 39 H 1.09005 * 109.46668 * 329.99629 * 12 11 9 40 40 H 1.08998 * 109.46274 * 0.02562 * 13 11 9 41 41 H 1.08998 * 109.49764 * 298.56977 * 14 13 11 42 42 H 1.09000 * 109.49587 * 58.66700 * 14 13 11 43 43 H 1.09000 * 109.59480 * 294.86575 * 15 14 13 44 44 H 1.09004 * 109.58162 * 174.43829 * 15 14 13 45 45 H 0.96998 * 120.00514 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.58086 * 293.81325 * 25 16 15 47 47 H 1.08995 * 109.58512 * 173.39511 * 25 16 15 48 48 H 1.08998 * 109.49490 * 301.33850 * 26 13 11 49 49 H 1.08993 * 109.49818 * 61.43701 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6008 1.9899 -0.8341 5 6 3.5793 1.4538 -0.1162 6 6 3.9740 2.6075 0.8456 7 6 2.8862 2.4636 1.9396 8 1 3.1675 1.6913 2.6557 9 6 2.6766 3.7785 2.6451 10 8 1.6318 4.3796 2.5098 11 7 3.6501 4.2868 3.4264 12 6 4.9123 3.5612 3.5894 13 6 3.4465 5.5655 4.1118 14 6 4.5103 6.5652 3.6526 15 6 4.2732 7.9111 4.3450 16 7 4.2356 7.6951 5.7977 17 6 5.0468 8.4174 6.6317 18 1 5.3602 7.9983 7.5765 19 6 5.4661 9.6882 6.2628 20 7 4.8366 10.3372 5.3064 21 14 6.9241 10.4773 7.1238 22 1 7.4525 9.5480 8.1546 23 1 7.9871 10.7703 6.1293 24 1 6.4912 11.7410 7.7726 25 6 3.3115 6.6891 6.3387 26 6 3.5592 5.3570 5.6238 27 8 1.6944 2.0800 1.2353 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 4.0007 0.5066 0.2206 34 1 3.8896 1.6765 -1.1371 35 1 3.9052 3.5748 0.3480 36 1 4.9703 2.4513 1.2594 37 1 5.6158 3.8784 2.8197 38 1 5.3296 3.7746 4.5734 39 1 4.7304 2.4905 3.4964 40 1 2.4563 5.9526 3.8717 41 1 5.4995 6.1901 3.9151 42 1 4.4450 6.6955 2.5724 43 1 3.3235 8.3306 4.0131 44 1 5.0840 8.5967 4.0983 45 1 5.1298 11.2250 5.0483 46 1 2.2833 7.0090 6.1695 47 1 3.4877 6.5684 7.4075 48 1 2.8167 4.6273 5.9467 49 1 4.5573 4.9935 5.8675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005475072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:35 Heat of formation + Delta-G solvation = -64.800352 kcal Electronic energy + Delta-G solvation = -27079.017781 eV Core-core repulsion = 23427.465379 eV Total energy + Delta-G solvation = -3651.552402 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.61967 -39.06393 -37.24570 -35.14433 -33.82361 -32.77144 -32.10196 -30.34429 -29.73664 -28.60437 -26.92019 -25.33034 -24.21727 -22.30181 -22.15184 -21.92845 -21.01008 -19.35187 -18.85083 -17.77655 -16.88077 -16.48022 -16.00741 -15.73647 -15.09515 -14.77170 -14.47909 -14.21712 -13.82690 -13.64792 -13.48278 -13.47200 -13.20909 -13.04267 -12.89452 -12.57951 -12.42515 -12.21531 -12.12672 -12.06335 -11.69489 -11.47591 -11.25110 -11.16315 -11.12702 -10.94346 -10.79818 -10.73489 -10.36273 -10.19767 -10.08850 -9.98515 -9.73729 -9.61775 -9.22519 -8.54014 -8.29983 -6.69537 -5.79484 -3.21761 2.69307 2.88855 3.36236 3.44164 3.46224 3.72135 4.10965 4.34234 4.42261 4.48766 4.70940 4.79108 4.85593 4.95826 5.09509 5.09716 5.17929 5.32145 5.35770 5.37737 5.42180 5.45390 5.50492 5.52415 5.60347 5.65629 5.69309 5.69767 5.75290 5.87799 5.96754 6.07665 6.09189 6.24675 6.32428 6.49569 6.57987 6.61957 6.73364 6.77114 6.94309 6.97330 7.34365 7.55005 7.66450 7.79125 8.34278 8.43967 9.20191 9.83651 10.40522 11.29250 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034586 B = 0.002769 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.371769 B =10107.984675 C =10279.325065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.076 3.924 4 H 0.082 0.918 5 C -0.149 4.149 6 C -0.146 4.146 7 C 0.066 3.934 8 H 0.092 0.908 9 C 0.510 3.490 10 O -0.523 6.523 11 N -0.606 5.606 12 C 0.074 3.926 13 C 0.146 3.854 14 C -0.144 4.144 15 C 0.173 3.827 16 N -0.593 5.593 17 C -0.252 4.252 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.902 5.902 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.148 3.852 26 C -0.138 4.138 27 O -0.346 6.346 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.020 0.980 44 H 0.091 0.909 45 H 0.254 0.746 46 H 0.020 0.980 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 -21.349 -10.653 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.099 0.901 5 C -0.187 4.187 6 C -0.183 4.183 7 C 0.005 3.995 8 H 0.110 0.890 9 C 0.296 3.704 10 O -0.398 6.398 11 N -0.340 5.340 12 C -0.069 4.069 13 C 0.044 3.956 14 C -0.184 4.184 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.381 4.381 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.020 3.980 26 C -0.178 4.178 27 O -0.264 6.264 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.038 0.962 44 H 0.109 0.891 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.913 -20.820 -10.700 23.427 hybrid contribution 1.082 0.350 0.302 1.176 sum 0.168 -20.470 -10.398 22.961 Atomic orbital electron populations 1.21715 0.95170 1.01310 1.02605 1.21901 0.97188 0.95566 1.02254 1.22881 0.94169 0.93566 0.87596 0.90051 1.23191 0.95353 0.99155 1.00999 1.23279 0.98994 1.00266 0.95807 1.22815 0.86489 0.94942 0.95251 0.89026 1.20376 0.83921 0.86651 0.79466 1.90713 1.26327 1.60889 1.61919 1.48089 1.15427 1.23050 1.47422 1.21848 0.86217 0.95767 1.03112 1.21205 1.01263 0.81509 0.91629 1.22544 0.97814 0.98744 0.99268 1.20769 1.00892 0.91258 0.82400 1.44107 1.43124 1.42365 1.01936 1.19220 1.21837 0.95264 1.01809 0.91581 1.25051 0.99837 0.95679 0.99154 1.70044 1.39468 1.12441 1.32675 0.86237 0.82647 0.79076 0.78893 1.20274 1.21586 1.21732 1.20868 0.93133 0.87688 0.96270 1.22375 1.01053 0.99888 0.94503 1.88569 1.27475 1.77681 1.32706 0.92980 0.91771 0.92840 0.91518 0.91070 0.90072 0.89644 0.89684 0.88885 0.92504 0.90293 0.91714 0.88709 0.92422 0.93168 0.96162 0.89098 0.93638 0.96170 0.92432 0.92913 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.82 37.16 0.36 -0.91 16 2 C -0.13 -1.02 5.50 -26.73 -0.15 -1.17 16 3 C 0.08 0.72 3.52 -26.00 -0.09 0.62 16 4 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 5 C -0.15 -1.06 6.54 -24.78 -0.16 -1.22 16 6 C -0.15 -1.29 5.87 -24.48 -0.14 -1.43 16 7 C 0.07 0.78 2.94 -26.86 -0.08 0.70 16 8 H 0.09 0.90 7.13 -51.92 -0.37 0.53 16 9 C 0.51 8.13 7.08 -10.99 -0.08 8.06 16 10 O -0.52 -10.84 15.88 -13.77 -0.22 -11.06 16 11 N -0.61 -8.94 2.76 -173.89 -0.48 -9.42 16 12 C 0.07 0.78 8.16 59.85 0.49 1.27 16 13 C 0.15 2.62 2.48 -67.89 -0.17 2.45 16 14 C -0.14 -2.75 5.34 -26.61 -0.14 -2.89 16 15 C 0.17 4.15 5.31 -3.71 -0.02 4.13 16 16 N -0.59 -14.78 2.99 -172.32 -0.52 -15.30 16 17 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 18 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 19 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 20 N -0.90 -26.20 11.19 55.49 0.62 -25.58 16 21 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 26 C -0.14 -2.43 5.31 -26.61 -0.14 -2.57 16 27 O -0.35 -4.68 9.89 -54.55 -0.54 -5.22 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.67 7.88 -51.93 -0.41 0.26 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.46 7.85 -51.93 -0.41 0.05 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.87 8.05 -51.93 -0.42 0.46 16 36 H 0.09 0.62 6.79 -51.93 -0.35 0.27 16 37 H 0.06 0.54 7.76 -51.93 -0.40 0.14 16 38 H 0.08 0.86 6.46 -51.93 -0.34 0.53 16 39 H 0.06 0.51 6.06 -51.93 -0.31 0.19 16 40 H 0.09 1.98 6.90 -51.93 -0.36 1.62 16 41 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.09 2.42 6.04 -51.93 -0.31 2.10 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 1.04 6.73 -51.93 -0.35 0.69 16 LS Contribution 373.40 15.07 5.63 5.63 Total: -1.00 -32.89 373.40 -9.73 -42.62 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.62 Total: -1.24 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.57 Total: 3.11 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.38 Total: -50.30 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.76 Total: -16.28 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.89 -9.73 -42.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005475072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.177 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds