Wall clock time and date at job start Tue Mar 31 2020 10:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46766 * 2 1 4 4 H 1.08994 * 109.82735 * 305.56574 * 3 2 1 5 5 C 1.54387 * 109.82633 * 184.58937 * 3 2 1 6 6 C 1.55303 * 102.25068 * 219.12866 * 5 3 2 7 7 C 1.54947 * 100.94514 * 34.13576 * 6 5 3 8 8 H 1.09009 * 110.39188 * 82.50650 * 7 6 5 9 9 C 1.50691 * 110.31397 * 204.63705 * 7 6 5 10 10 O 1.21287 * 120.00096 * 112.16347 * 9 7 6 11 11 N 1.34777 * 120.00174 * 292.16366 * 9 7 6 12 12 C 1.46499 * 120.00072 * 0.02562 * 11 9 7 13 13 C 1.46500 * 120.00093 * 179.97438 * 11 9 7 14 14 C 1.53038 * 109.46314 * 240.02884 * 13 11 9 15 15 C 1.53196 * 109.31163 * 178.60382 * 14 13 11 16 16 N 1.46920 * 108.76724 * 54.65501 * 15 14 13 17 17 C 1.36940 * 120.62851 * 126.35852 * 16 15 14 18 18 H 1.08006 * 119.99866 * 207.69352 * 17 16 15 19 19 C 1.38806 * 119.99880 * 27.69951 * 17 16 15 20 20 N 1.31617 * 120.00316 * 17.35855 * 19 17 16 21 21 Si 1.86806 * 120.00068 * 197.36032 * 19 17 16 22 22 H 1.48505 * 109.46874 * 359.97438 * 21 19 17 23 23 H 1.48489 * 109.47422 * 119.99720 * 21 19 17 24 24 H 1.48502 * 109.46887 * 240.00084 * 21 19 17 25 25 C 1.46925 * 118.73990 * 306.38894 * 16 15 14 26 26 C 1.53045 * 109.45653 * 119.97540 * 13 11 9 27 27 O 1.43235 * 109.83054 * 66.45826 * 3 2 1 28 28 H 1.09006 * 109.47465 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47321 * 299.99446 * 1 2 3 30 30 H 1.08995 * 109.47689 * 59.99915 * 1 2 3 31 31 H 1.08996 * 109.47217 * 120.00324 * 2 1 3 32 32 H 1.09002 * 109.46886 * 240.00246 * 2 1 3 33 33 H 1.09001 * 110.84989 * 337.32189 * 5 3 2 34 34 H 1.08999 * 110.84466 * 100.94209 * 5 3 2 35 35 H 1.08998 * 111.13018 * 276.21371 * 6 5 3 36 36 H 1.09001 * 111.15940 * 152.06799 * 6 5 3 37 37 H 1.09005 * 109.47344 * 89.99212 * 12 11 9 38 38 H 1.08996 * 109.47257 * 210.00078 * 12 11 9 39 39 H 1.09005 * 109.46668 * 329.99629 * 12 11 9 40 40 H 1.08998 * 109.46274 * 0.02562 * 13 11 9 41 41 H 1.08998 * 109.49764 * 298.56977 * 14 13 11 42 42 H 1.09000 * 109.49587 * 58.66700 * 14 13 11 43 43 H 1.09000 * 109.59480 * 294.86575 * 15 14 13 44 44 H 1.09004 * 109.58162 * 174.43829 * 15 14 13 45 45 H 0.96998 * 120.00514 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.58086 * 293.81325 * 25 16 15 47 47 H 1.08995 * 109.58512 * 173.39511 * 25 16 15 48 48 H 1.08998 * 109.49490 * 301.33850 * 26 13 11 49 49 H 1.08993 * 109.49818 * 61.43701 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6008 1.9899 -0.8341 5 6 3.5793 1.4538 -0.1162 6 6 3.9740 2.6075 0.8456 7 6 2.8862 2.4636 1.9396 8 1 3.1675 1.6913 2.6557 9 6 2.6766 3.7785 2.6451 10 8 1.6318 4.3796 2.5098 11 7 3.6501 4.2868 3.4264 12 6 4.9123 3.5612 3.5894 13 6 3.4465 5.5655 4.1118 14 6 4.5103 6.5652 3.6526 15 6 4.2732 7.9111 4.3450 16 7 4.2356 7.6951 5.7977 17 6 5.0468 8.4174 6.6317 18 1 5.3602 7.9983 7.5765 19 6 5.4661 9.6882 6.2628 20 7 4.8366 10.3372 5.3064 21 14 6.9241 10.4773 7.1238 22 1 7.4525 9.5480 8.1546 23 1 7.9871 10.7703 6.1293 24 1 6.4912 11.7410 7.7726 25 6 3.3115 6.6891 6.3387 26 6 3.5592 5.3570 5.6238 27 8 1.6944 2.0800 1.2353 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 4.0007 0.5066 0.2206 34 1 3.8896 1.6765 -1.1371 35 1 3.9052 3.5748 0.3480 36 1 4.9703 2.4513 1.2594 37 1 5.6158 3.8784 2.8197 38 1 5.3296 3.7746 4.5734 39 1 4.7304 2.4905 3.4964 40 1 2.4563 5.9526 3.8717 41 1 5.4995 6.1901 3.9151 42 1 4.4450 6.6955 2.5724 43 1 3.3235 8.3306 4.0131 44 1 5.0840 8.5967 4.0983 45 1 5.1298 11.2250 5.0483 46 1 2.2833 7.0090 6.1695 47 1 3.4877 6.5684 7.4075 48 1 2.8167 4.6273 5.9467 49 1 4.5573 4.9935 5.8675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005475072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:34 Heat of formation + Delta-G solvation = -84.520533 kcal Electronic energy + Delta-G solvation = -27079.872912 eV Core-core repulsion = 23427.465379 eV Total energy + Delta-G solvation = -3652.407533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.66633 -40.16748 -38.80742 -36.62205 -34.66852 -34.24403 -33.11583 -31.98340 -31.43606 -29.57879 -27.95963 -26.96204 -25.32314 -23.90661 -23.60462 -22.74649 -21.86878 -20.79433 -20.17552 -18.85499 -18.61711 -17.58708 -17.10177 -16.87243 -16.70941 -16.03407 -15.70709 -15.41847 -15.25243 -14.95192 -14.80664 -14.56130 -14.20107 -14.18485 -14.08248 -13.89970 -13.83460 -13.20885 -13.15918 -13.03857 -12.98527 -12.74270 -12.63738 -12.50326 -12.37423 -12.11716 -11.95908 -11.91365 -11.86166 -11.78997 -11.56930 -11.48598 -11.34353 -10.95349 -10.58352 -10.33502 -9.62132 -8.73973 -7.88401 -5.34634 1.47566 1.49154 1.52269 1.60254 1.77687 2.51383 2.88737 3.27525 3.33825 3.56080 3.63515 3.76217 3.86488 3.96370 4.02944 4.10427 4.21986 4.26902 4.31352 4.34554 4.44239 4.46624 4.53461 4.61038 4.67854 4.70862 4.81069 4.83958 4.84868 4.94111 4.98092 5.00221 5.02538 5.04749 5.08550 5.11908 5.14530 5.27122 5.33991 5.42556 5.43418 5.56360 5.62765 5.67850 6.01096 6.37215 6.42669 7.12212 7.14566 7.82122 8.35652 9.19110 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.034586 B = 0.002769 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.371769 B =10107.984675 C =10279.325065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C 0.064 3.936 4 H 0.069 0.931 5 C -0.137 4.137 6 C -0.142 4.142 7 C 0.069 3.931 8 H 0.123 0.877 9 C 0.501 3.499 10 O -0.586 6.586 11 N -0.600 5.600 12 C 0.063 3.937 13 C 0.153 3.847 14 C -0.124 4.124 15 C 0.181 3.819 16 N -0.608 5.608 17 C -0.260 4.260 18 H 0.073 0.927 19 C -0.054 4.054 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.262 1.262 23 H -0.289 1.289 24 H -0.296 1.296 25 C 0.142 3.858 26 C -0.121 4.121 27 O -0.384 6.384 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.054 0.946 43 H -0.015 1.015 44 H 0.062 0.938 45 H 0.250 0.750 46 H 0.003 0.997 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.504 -24.798 -10.760 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C 0.007 3.993 4 H 0.087 0.913 5 C -0.174 4.174 6 C -0.179 4.179 7 C 0.009 3.991 8 H 0.140 0.860 9 C 0.290 3.710 10 O -0.465 6.465 11 N -0.333 5.333 12 C -0.078 4.078 13 C 0.050 3.950 14 C -0.164 4.164 15 C 0.054 3.946 16 N -0.331 5.331 17 C -0.390 4.390 18 H 0.091 0.909 19 C -0.249 4.249 20 N -0.586 5.586 21 Si 0.798 3.202 22 H -0.186 1.186 23 H -0.216 1.216 24 H -0.223 1.223 25 C 0.016 3.984 26 C -0.160 4.160 27 O -0.303 6.303 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.003 0.997 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.021 0.979 47 H 0.084 0.916 48 H 0.088 0.912 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.784 -24.330 -10.799 26.678 hybrid contribution 0.146 1.431 0.332 1.476 sum 1.930 -22.899 -10.467 25.251 Atomic orbital electron populations 1.21727 0.96331 1.01779 1.01176 1.21893 0.96168 0.94582 1.03665 1.23116 0.96330 0.94087 0.85802 0.91279 1.23198 0.93051 0.99577 1.01586 1.23322 0.99422 1.00082 0.95099 1.22952 0.87101 0.92750 0.96326 0.85999 1.21315 0.82961 0.87816 0.78932 1.90684 1.28924 1.62900 1.64033 1.48029 1.16962 1.21802 1.46486 1.22229 0.84211 0.97479 1.03860 1.20785 0.98752 0.83124 0.92356 1.22249 0.98942 0.96304 0.98871 1.20526 0.97900 0.93327 0.82838 1.44358 1.43774 1.42910 1.02098 1.19592 1.21727 0.95482 1.02157 0.90913 1.25870 1.02436 0.96377 1.00212 1.70217 1.41135 1.12644 1.34558 0.85161 0.79171 0.77855 0.77963 1.18633 1.21559 1.22305 1.21009 0.91524 0.88614 0.97213 1.22157 1.02552 0.97833 0.93482 1.88549 1.29124 1.78282 1.34325 0.91527 0.94490 0.93019 0.90986 0.88534 0.87450 0.88094 0.91770 0.85719 0.90744 0.90129 0.88062 0.92486 0.90804 0.92715 0.99706 0.91960 0.94110 0.97910 0.91585 0.91241 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.82 71.98 0.71 -1.76 16 2 C -0.13 -1.63 5.50 30.59 0.17 -1.47 16 3 C 0.06 1.10 3.52 31.07 0.11 1.20 16 4 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.14 -1.41 6.54 31.86 0.21 -1.20 16 6 C -0.14 -2.02 5.87 32.05 0.19 -1.83 16 7 C 0.07 1.48 2.94 30.51 0.09 1.57 16 8 H 0.12 1.86 7.13 -2.38 -0.02 1.85 16 9 C 0.50 15.73 7.08 87.65 0.62 16.35 16 10 O -0.59 -25.36 15.88 15.42 0.24 -25.12 16 11 N -0.60 -16.71 2.76 -822.44 -2.27 -18.98 16 12 C 0.06 1.07 8.16 127.77 1.04 2.11 16 13 C 0.15 5.50 2.48 45.02 0.11 5.62 16 14 C -0.12 -4.75 5.34 30.67 0.16 -4.58 16 15 C 0.18 9.02 5.31 86.36 0.46 9.48 16 16 N -0.61 -30.89 2.99 -699.10 -2.09 -32.98 16 17 C -0.26 -14.17 9.58 84.03 0.81 -13.36 16 18 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 19 C -0.05 -3.01 4.91 84.86 0.42 -2.60 16 20 N -0.94 -56.45 11.19 21.65 0.24 -56.21 16 21 Si 0.97 44.47 29.59 68.60 2.03 46.50 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 25 C 0.14 6.08 6.52 86.36 0.56 6.64 16 26 C -0.12 -4.09 5.31 30.67 0.16 -3.93 16 27 O -0.38 -10.13 9.89 -130.50 -1.29 -11.42 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.04 0.78 7.88 -2.39 -0.02 0.76 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.11 0.60 7.85 -2.39 -0.02 0.58 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 1.20 8.05 -2.39 -0.02 1.18 16 36 H 0.12 0.98 6.79 -2.39 -0.02 0.97 16 37 H 0.07 1.05 7.76 -2.38 -0.02 1.03 16 38 H 0.08 1.40 6.46 -2.39 -0.02 1.38 16 39 H 0.10 1.01 6.06 -2.38 -0.01 0.99 16 40 H 0.06 2.51 6.90 -2.39 -0.02 2.49 16 41 H 0.07 2.61 7.72 -2.39 -0.02 2.59 16 42 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 43 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 44 H 0.06 3.46 6.04 -2.38 -0.01 3.44 16 45 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 46 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 47 H 0.07 2.66 7.93 -2.39 -0.02 2.65 16 48 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.08 2.46 6.73 -2.39 -0.02 2.44 16 Total: -1.00 -76.97 373.40 3.59 -73.38 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.91 Total: 12.58 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 5.82 Total: 12.24 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -4.12 Total: -108.17 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -1.05 Total: -36.54 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -76.97 3.59 -73.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005475072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.137 kcal (2) G-P(sol) polarization free energy of solvation -76.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds